RchiOBHm_Chr5g0058611

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0007550
Physical Location & Seq
Reverse (-)
63117518 .. 63117832
315 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33524

Sequence Viewer

Length: 315 bp
ATGTTCTATTTTTGGGGTCTTTTGGCTCCTCCTGATCTGGGTTTCGTTTGCCTAGATTTGTTCTCTAAGTTGTGGCTGCAAATCTCATGTTATGGTGCAAATTTGTACTGTGGGGAAGAGGATATATCTATGTTTAGATCCTCTTTTTTCTTTTGTTTTTCCATTTTCAGGGTTATTTTGATCGGGCTTTGGTGTAGGGGTCTCCTTACAAGCTGCAATTTTGGAGTTCCATGTACGAATTCAGCTACGATGGCCATGGTGGACGTTGGTGGTGCTGGATTTGTTGCGACTGAAGCTTCTGATGTCTTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.53

Weight (kDa)

4.24

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 132
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 2 cut(s) 100, 238
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 2 cut(s) 107, 235
AfiI CCNNNNNNNGG 2 cut(s) 38, 168
AluBI AGCT 3 cut(s) 213, 245, 296
AluI AGCT 3 cut(s) 213, 245, 296
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 1 cut(s) 132
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 76, 213
ApoI RAATTY 2 cut(s) 100, 238
BalI TGGCCA 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 298
BbvI GCAGC 2 cut(s) 63, 200
BccI CCATC 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 53
BisI GCNGC 2 cut(s) 77, 214
BlsI GCNGC 2 cut(s) 78, 215
BmiI GGNNCC 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 298
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 168
BseDI CCNNGG 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 38, 168
BseRI GAGGAG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 63, 200
BshFI GGCC 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 38, 168
BsmAI GTCTC 1 cut(s) 206
BsnI GGCC 1 cut(s) 254
Bso31I GGTCTC 1 cut(s) 206
Bsp143I GATC 3 cut(s) 34, 137, 180
Bsp19I CCATGG 1 cut(s) 255
BspANI GGCC 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 27
BspPI GGATC 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 3 cut(s) 34, 137, 180
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 255
BstKTI GATC 3 cut(s) 37, 140, 183
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 3 cut(s) 34, 137, 180
BstMWI GCNNNNNNNGC 2 cut(s) 251, 293
BstV1I GCAGC 2 cut(s) 63, 200
BstV2I GAAGAC 1 cut(s) 298
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
BsuRI GGCC 1 cut(s) 254
BtgI CCRYGG 1 cut(s) 255
Csp6I GTAC 2 cut(s) 106, 234
CviAII CATG 3 cut(s) 87, 231, 256
CviJI RGCY 7 cut(s) 26, 76, 187, 213, 245, 254, 296
CviKI_1 RGCY 7 cut(s) 26, 76, 187, 213, 245, 254, 296
CviQI GTAC 2 cut(s) 106, 234
DdeI CTNAG 1 cut(s) 66
DpnI GATC 3 cut(s) 36, 139, 182
DpnII GATC 3 cut(s) 34, 137, 180
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 312
EcoRI GAATTC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 3 cut(s) 90, 234, 259
FaiI YATR 6 cut(s) 88, 93, 125, 131, 232, 257
FatI CATG 3 cut(s) 86, 230, 255
Fnu4HI GCNGC 2 cut(s) 77, 214
Fsp4HI GCNGC 2 cut(s) 77, 214
FspBI CTAG 1 cut(s) 53
GluI GCNGC 2 cut(s) 77, 214
HaeIII GGCC 1 cut(s) 254
Hin1II CATG 3 cut(s) 90, 234, 259
HindIII AAGCTT 1 cut(s) 294
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 79, 98, 216
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 293
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 3 cut(s) 90, 234, 259
Kzo9I GATC 3 cut(s) 34, 137, 180
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 4 cut(s) 23, 45, 154, 261
Lsp1109I GCAGC 2 cut(s) 63, 200
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 264
MalI GATC 3 cut(s) 36, 139, 182
MboI GATC 3 cut(s) 34, 137, 180
MboII GAAGA 2 cut(s) 128, 298
MflI RGATCY 1 cut(s) 137
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 3 cut(s) 100, 217, 238
MluNI TGGCCA 1 cut(s) 254
MnlI CCTC 3 cut(s) 39, 112, 151
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
MseI TTAA 1 cut(s) 313
Msp20I TGGCCA 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 251, 293
NcoI CCATGG 1 cut(s) 255
NdeII GATC 3 cut(s) 34, 137, 180
NlaIII CATG 3 cut(s) 90, 234, 259
NlaIV GGNNCC 1 cut(s) 27
PkrI GCNGC 2 cut(s) 78, 215
PspN4I GGNNCC 1 cut(s) 27
PsuI RGATCY 1 cut(s) 137
RsaI GTAC 2 cut(s) 107, 235
RsaNI GTAC 2 cut(s) 106, 234
SaqAI TTAA 1 cut(s) 313
SatI GCNGC 2 cut(s) 77, 214
Sau3AI GATC 3 cut(s) 34, 137, 180
SetI ASST 4 cut(s) 215, 247, 267, 298
Sse9I AATT 3 cut(s) 100, 217, 238
SspMI CTAG 1 cut(s) 53
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 1 cut(s) 267
TasI AATT 3 cut(s) 100, 217, 238
TatI WGTACW 1 cut(s) 105
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TseI GCWGC 2 cut(s) 76, 213
XapI RAATTY 2 cut(s) 100, 238
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.