RLG00000019524

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0007550
Physical Location & Seq
Forward (+)
53141499 .. 53143548
2050 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019524

Sequence Viewer

Length: 585 bp
ATGGCGGCCGAGGCTAGCATTATTCTGACGCTCACTCTAATCCATCGCACGACAGAGGCGGAGGAAGTTCAGGGCCGTGTCTCCGGTGCCGACTCAAATTCCAGCTTATTCTCTACCACCGGCCTCGTTGAGCTCTACTCTGGTGGCTTCGCTGAGCACTTCTCGCCTCACTCTCCAGCCACAATTGGAACCGATAGGACCGCCGGTTGCTTGAGCCTCGCCGATCACGAAATCAAAACCGGAGTCGAAATGCCGACTGCTAGCTTTTTTTTCTTTTTCTTTTTGAAAGAAGATTTTTATGTGGCTTCTCTCAAATGCGATTTCTCACGTCTCAATCGGAAGATAGGTAGAGCCTTGGCTCGGGTGCATGCACCACCTCCTTCTATGTTCTATTTTCGGGGCCTCTTGGCTCCTCCTAATCTGGGTTTCGTTTGCCTAGATTTGTTCTCAAAGGTTATTTTGATCAGGCTATGGTGTAGGGGTCTCTTTACAAGCTGCAATTTTGGAGTTCCATGTACGAATTCAACTACGACGGCCATGGTGGACGTTGGTGGTGCTGGATTTGTGGCGGGTGAAGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

20.99

Weight (kDa)

5.71

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AciI CCGC 4 cut(s) 5, 59, 201, 569
AcoI YGGCCR 2 cut(s) 6, 534
AcsI RAATTY 2 cut(s) 97, 520
AfaI GTAC 1 cut(s) 517
AfiI CCNNNNNNNGG 2 cut(s) 360, 422
AgsI TTSAA 2 cut(s) 286, 525
AjiI CACGTC 1 cut(s) 329
AluBI AGCT 4 cut(s) 105, 133, 264, 495
AluI AGCT 4 cut(s) 105, 133, 264, 495
Alw21I GWGCWC 2 cut(s) 135, 159
Alw26I GTCTC 3 cut(s) 85, 335, 488
Ama87I CYCGRG 1 cut(s) 360
AoxI GGCC 5 cut(s) 6, 73, 121, 400, 534
ApeKI GCWGC 1 cut(s) 495
ApoI RAATTY 2 cut(s) 97, 520
ArsI GACNNNNNNTTYG 2 cut(s) 228, 260
AspS9I GGNCC 3 cut(s) 73, 198, 400
AsuHPI GGTGA 1 cut(s) 584
AsuNHI GCTAGC 2 cut(s) 14, 260
AvaI CYCGRG 1 cut(s) 360
AvaII GGWCC 1 cut(s) 198
BanI GGYRCC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 2 cut(s) 135, 159
BbvI GCAGC 1 cut(s) 482
BccI CCATC 1 cut(s) 51
BceAI ACGGC 2 cut(s) 60, 549
BclI TGATCA 1 cut(s) 462
BcoDI GTCTC 3 cut(s) 85, 335, 488
BfaI CTAG 3 cut(s) 15, 261, 437
BisI GCNGC 2 cut(s) 6, 496
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 2 cut(s) 7, 497
Bme18I GGWCC 1 cut(s) 198
BmeT110I CYCGRG 1 cut(s) 360
BmgBI CACGTC 1 cut(s) 329
BmgT120I GGNCC 3 cut(s) 73, 198, 400
BmiI GGNNCC 4 cut(s) 88, 190, 401, 411
BmtI GCTAGC 2 cut(s) 18, 264
BplI GAGNNNNNCTC 4 cut(s) 122, 154, 146, 178
BpmI CTGGAG 1 cut(s) 159
Bpu1102I GCTNAGC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 232
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 3 cut(s) 9, 354, 537
BsaWI WCCGGW 2 cut(s) 83, 239
Bsc4I CCNNNNNNNGG 2 cut(s) 360, 422
Bse118I RCCGGY 2 cut(s) 119, 203
BseDI CCNNGG 3 cut(s) 9, 354, 537
BseLI CCNNNNNNNGG 2 cut(s) 360, 422
BseMII CTCAG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 402
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 482
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 5 cut(s) 8, 75, 123, 402, 536
BshNI GGYRCC 1 cut(s) 86
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 135, 159
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 4 cut(s) 84, 120, 204, 240
BslI CCNNNNNNNGG 2 cut(s) 360, 422
BsmAI GTCTC 3 cut(s) 85, 335, 488
BsmBI CGTCTC 1 cut(s) 335
BsnI GGCC 5 cut(s) 8, 75, 123, 402, 536
Bso31I GGTCTC 1 cut(s) 488
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 2 cut(s) 135, 159
Bsp143I GATC 2 cut(s) 223, 462
Bsp1720I GCTNAGC 1 cut(s) 153
Bsp19I CCATGG 1 cut(s) 537
BspACI CCGC 4 cut(s) 5, 59, 201, 569
BspANI GGCC 5 cut(s) 8, 75, 123, 402, 536
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 4 cut(s) 88, 190, 401, 411
BspOI GCTAGC 2 cut(s) 18, 264
BspT107I GGYRCC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 488
BsrFI RCCGGY 2 cut(s) 119, 203
BssAI RCCGGY 2 cut(s) 119, 203
BssECI CCNNGG 3 cut(s) 9, 354, 537
BssMI GATC 2 cut(s) 223, 462
BssT1I CCWWGG 2 cut(s) 354, 537
BstC8I GCNNGC 3 cut(s) 16, 262, 369
BstDEI CTNAG 1 cut(s) 153
BstDSI CCRYGG 1 cut(s) 537
BstKTI GATC 2 cut(s) 226, 465
BstMAI GTCTC 3 cut(s) 85, 335, 488
BstMBI GATC 2 cut(s) 223, 462
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 11, 163
BstNSI RCATGY 1 cut(s) 371
BstV1I GCAGC 1 cut(s) 482
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 5 cut(s) 8, 75, 123, 402, 536
BtgI CCRYGG 1 cut(s) 537
BtgZI GCGATG 1 cut(s) 29
BtrI CACGTC 1 cut(s) 329
Cac8I GCNNGC 3 cut(s) 16, 262, 369
Cfr10I RCCGGY 2 cut(s) 119, 203
Cfr13I GGNCC 3 cut(s) 73, 198, 400
CseI GACGC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 516
CviAII CATG 3 cut(s) 368, 513, 538
CviQI GTAC 1 cut(s) 516
DdeI CTNAG 1 cut(s) 153
DpnI GATC 2 cut(s) 225, 464
DpnII GATC 2 cut(s) 223, 462
EaeI YGGCCR 2 cut(s) 6, 534
EagI CGGCCG 1 cut(s) 6
EciI GGCGGA 1 cut(s) 74
Ecl136II GAGCTC 1 cut(s) 133
EclXI CGGCCG 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 354, 537
Eco24I GRGCYC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 198
Eco52I CGGCCG 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 360
EcoICRI GAGCTC 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 520
EcoT14I CCWWGG 2 cut(s) 354, 537
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 2 cut(s) 354, 537
Esp3I CGTCTC 1 cut(s) 335
FaeI CATG 3 cut(s) 371, 516, 541
FaiI YATR 6 cut(s) 300, 369, 386, 472, 514, 539
FatI CATG 3 cut(s) 367, 512, 537
FauI CCCGC 1 cut(s) 562
FbaI TGATCA 1 cut(s) 462
Fnu4HI GCNGC 2 cut(s) 6, 496
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 2 cut(s) 6, 496
FspBI CTAG 3 cut(s) 15, 261, 437
GluI GCNGC 2 cut(s) 6, 496
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 5 cut(s) 8, 75, 123, 402, 536
HapII CCGG 4 cut(s) 84, 120, 204, 240
HgaI GACGC 1 cut(s) 37
Hin1II CATG 3 cut(s) 371, 516, 541
HinfI GANTC 2 cut(s) 92, 243
HpaII CCGG 4 cut(s) 84, 120, 204, 240
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 1 cut(s) 544
Hpy188I TCNGA 2 cut(s) 27, 339
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 1 cut(s) 544
Hpy99I CGWCG 1 cut(s) 535
HpyAV CCTTC 1 cut(s) 390
HpyCH4IV ACGT 2 cut(s) 328, 546
HpyCH4V TGCA 3 cut(s) 367, 371, 498
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 163
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 2 cut(s) 328, 546
Hsp92II CATG 3 cut(s) 371, 516, 541
Ksp22I TGATCA 1 cut(s) 462
Kzo9I GATC 2 cut(s) 223, 462
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 1 cut(s) 482
MaeI CTAG 3 cut(s) 15, 261, 437
MaeII ACGT 2 cut(s) 328, 546
MalI GATC 2 cut(s) 225, 464
MboI GATC 2 cut(s) 223, 462
MboII GAAGA 2 cut(s) 302, 352
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 2 cut(s) 135, 159
MluCI AATT 4 cut(s) 97, 183, 499, 520
MlyI GAGTC 2 cut(s) 86, 252
MnlI CCTC 9 cut(s) 4, 49, 55, 134, 177, 227, 387, 413, 423
MspI CCGG 4 cut(s) 84, 120, 204, 240
MunI CAATTG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 11, 163
NcoI CCATGG 1 cut(s) 537
NdeII GATC 2 cut(s) 223, 462
NheI GCTAGC 2 cut(s) 14, 260
NlaIII CATG 3 cut(s) 371, 516, 541
NlaIV GGNNCC 4 cut(s) 88, 190, 401, 411
NmeAIII GCCGAG 1 cut(s) 34
NspI RCATGY 1 cut(s) 371
PaeI GCATGC 1 cut(s) 371
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PkrI GCNGC 2 cut(s) 7, 497
PleI GAGTC 2 cut(s) 86, 251
PpsI GAGTC 2 cut(s) 86, 251
Psp124BI GAGCTC 1 cut(s) 135
PspN4I GGNNCC 4 cut(s) 88, 190, 401, 411
PspPI GGNCC 3 cut(s) 73, 198, 400
RsaI GTAC 1 cut(s) 517
RsaNI GTAC 1 cut(s) 516
SacI GAGCTC 1 cut(s) 135
SatI GCNGC 2 cut(s) 6, 496
Sau3AI GATC 2 cut(s) 223, 462
Sau96I GGNCC 3 cut(s) 73, 198, 400
SchI GAGTC 2 cut(s) 86, 252
SduI GDGCHC 2 cut(s) 135, 159
SetI ASST 9 cut(s) 107, 135, 266, 331, 349, 379, 456, 497, 549
SinI GGWCC 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SphI GCATGC 1 cut(s) 371
Sse9I AATT 4 cut(s) 97, 183, 499, 520
SsiI CCGC 4 cut(s) 5, 59, 201, 569
SspMI CTAG 3 cut(s) 15, 261, 437
SstI GAGCTC 1 cut(s) 135
StyI CCWWGG 2 cut(s) 354, 537
TaiI ACGT 2 cut(s) 331, 549
TaqI TCGA 1 cut(s) 246
TasI AATT 4 cut(s) 97, 183, 499, 520
TauI GCSGC 1 cut(s) 8
TseI GCWGC 1 cut(s) 495
VpaK11BI GGWCC 1 cut(s) 198
XapI RAATTY 2 cut(s) 97, 520
XceI RCATGY 1 cut(s) 371
XspI CTAG 3 cut(s) 15, 261, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.