Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007550

Physical Location & Seq

Genomic Coordinates Reverse (-)

23504528 .. 23505180

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017949

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGTGCTTCCCTGAGCTATGTCTCAGTTTTCTTGAGCTATGTCTCAGTTCTGGGGCTTCTGCCTCATGTTTCTTCTCTTTTTTTCTTCTTCGGTCTCCCTCCCTTCTCCTTCCATCTTGCCCCAATTTTCTTTTTGCACTTTAGCTCCAAATTTGCTCTAACCCATTCCTCACAACCCATCACTTTCTTTTACCTACCATCTCTCATCTCCAGATCTTGCTGCCTGGATTTCTTCTATTCCATTTCAAATCAATACCATGGCTTGGTTGTTGCAGTGCCTTCTCTCAAACGCGATTTCTCGCGTCTCAATCGGAAGATAGGTAGAGCCTTGGCTCAGATGCATGCACCACCTCCTTCTATGTTCTATTTTTGGGGTCTCTTGGCTCCTCCTGATCTGGGTTTCGGGTCTCCTTACAAGCTGCAATTTTGGAGTTCCATGTACGAATTCAGCTACGACGGCCATGGTGGATGTTGGTGGTGCTGGATTTGTGGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.88

Weight (kDa)

8.87

Isoelectric Point (pI)

58.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007550)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0122091 RchiOBHm_Chr5g0058611
rosa_laevigata	RLG00000000205 RLG00000003782 RLG00000017045 RLG00000017949 RLG00000019524 RLG00000025887 RLG00000026633 RLG00000030624
rosa_multiflora	Rmu_sc0002258.1_g000003 Rmu_sc0005564.1_g000002
rosa_roxburghii	Rroxscaffold_6G00399590 Rroxscaffold_6G00422990
rosa_rugosa	Rorug02G0365600 Rorug05G0530100 Rorug07G0081400
rosa_samantha	Rh2BG641400 Rh2DG652300 Rh4AG117200 Rh4AG296500 Rh4CG017700 Rh5AG418800 Rh5BG435000 Rh6BG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccII	CGCG	2 cut(s)	294, 304
AcoI	YGGCCR	1 cut(s)	460
AcsI	RAATTY	2 cut(s)	152, 446
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	265, 398
AgsI	TTSAA	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	6 cut(s)	18, 39, 147, 421, 453, 498
AluI	AGCT	6 cut(s)	18, 39, 147, 421, 453, 498
Alw26I	GTCTC	6 cut(s)	28, 49, 101, 311, 383, 414
AoxI	GGCC	1 cut(s)	460
ApeKI	GCWGC	3 cut(s)	222, 421, 495
ApoI	RAATTY	2 cut(s)	152, 446
BbvI	GCAGC	2 cut(s)	209, 408
BccI	CCATC	3 cut(s)	123, 188, 208
BceAI	ACGGC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	6 cut(s)	28, 49, 101, 311, 383, 414
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	3 cut(s)	223, 422, 496
BlsI	GCNGC	3 cut(s)	224, 423, 497
Bme1390I	CCNGG	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	330
BpmI	CTGGAG	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	55
BsaI	GGTCTC	3 cut(s)	101, 383, 414
BsaJI	CCNNGG	3 cut(s)	259, 330, 463
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 398
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	3 cut(s)	259, 330, 463
BseGI	GGATG	1 cut(s)	476
BseLI	CCNNNNNNNGG	2 cut(s)	265, 398
BseMII	CTCAG	4 cut(s)	5, 39, 60, 350
BseRI	GAGGAG	1 cut(s)	378
BseXI	GCAGC	2 cut(s)	209, 408
Bsh1236I	CGCG	2 cut(s)	294, 304
BshFI	GGCC	1 cut(s)	462
BslI	CCNNNNNNNGG	2 cut(s)	265, 398
BsmAI	GTCTC	6 cut(s)	28, 49, 101, 311, 383, 414
BsmBI	CGTCTC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	462
Bso31I	GGTCTC	3 cut(s)	101, 383, 414
Bsp143I	GATC	2 cut(s)	215, 394
Bsp19I	CCATGG	2 cut(s)	259, 463
BspANI	GGCC	1 cut(s)	462
BspCNI	CTCAG	4 cut(s)	6, 38, 59, 349
BspFNI	CGCG	2 cut(s)	294, 304
BspLI	GGNNCC	1 cut(s)	387
BspTNI	GGTCTC	3 cut(s)	101, 383, 414
BssECI	CCNNGG	3 cut(s)	259, 330, 463
BssMI	GATC	2 cut(s)	215, 394
BssT1I	CCWWGG	3 cut(s)	259, 330, 463
Bst2UI	CCWGG	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	4 cut(s)	14, 25, 46, 336
BstDSI	CCRYGG	2 cut(s)	259, 463
BstF5I	GGATG	1 cut(s)	476
BstFNI	CGCG	2 cut(s)	294, 304
BstKTI	GATC	2 cut(s)	218, 397
BstMAI	GTCTC	6 cut(s)	28, 49, 101, 311, 383, 414
BstMBI	GATC	2 cut(s)	215, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	459
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	225
BstUI	CGCG	2 cut(s)	294, 304
BstV1I	GCAGC	2 cut(s)	209, 408
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	462
BtgI	CCRYGG	2 cut(s)	259, 463
BtsCI	GGATG	1 cut(s)	476
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	345
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	5 cut(s)	68, 260, 344, 439, 464
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	4 cut(s)	14, 25, 46, 336
DpnI	GATC	2 cut(s)	217, 396
DpnII	GATC	2 cut(s)	215, 394
EaeI	YGGCCR	1 cut(s)	460
Eco130I	CCWWGG	3 cut(s)	259, 330, 463
Eco31I	GGTCTC	3 cut(s)	101, 383, 414
EcoRI	GAATTC	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	3 cut(s)	259, 330, 463
EcoT22I	ATGCAT	1 cut(s)	345
ErhI	CCWWGG	3 cut(s)	259, 330, 463
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	5 cut(s)	71, 263, 347, 442, 467
FaiI	YATR	8 cut(s)	21, 42, 69, 261, 345, 362, 440, 465
FatI	CATG	5 cut(s)	67, 259, 343, 438, 463
Fnu4HI	GCNGC	3 cut(s)	223, 422, 496
FokI	GGATG	1 cut(s)	483
Fsp4HI	GCNGC	3 cut(s)	223, 422, 496
GluI	GCNGC	3 cut(s)	223, 422, 496
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	462
HgaI	GACGC	1 cut(s)	293
Hin1II	CATG	5 cut(s)	71, 263, 347, 442, 467
Hpy188I	TCNGA	2 cut(s)	315, 339
Hpy188III	TCNNGA	3 cut(s)	34, 213, 392
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	4 cut(s)	115, 121, 291, 366
HpyCH4V	TGCA	5 cut(s)	139, 275, 343, 347, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	459
HpyF3I	CTNAG	4 cut(s)	14, 25, 46, 336
Hsp92II	CATG	5 cut(s)	71, 263, 347, 442, 467
Kzo9I	GATC	2 cut(s)	215, 394
LmnI	GCTCC	2 cut(s)	152, 391
LpnPI	CCDG	8 cut(s)	26, 38, 212, 226, 239, 383, 405, 469
Lsp1109I	GCAGC	2 cut(s)	209, 408
LweI	GCATC	1 cut(s)	330
MalI	GATC	2 cut(s)	217, 396
MboI	GATC	2 cut(s)	215, 394
MboII	GAAGA	5 cut(s)	66, 79, 82, 226, 328
MflI	RGATCY	1 cut(s)	215
MluCI	AATT	4 cut(s)	126, 152, 425, 446
MnlI	CCTC	5 cut(s)	75, 111, 181, 363, 399
Mph1103I	ATGCAT	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	498
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	2 cut(s)	294, 304
MwoI	GCNNNNNNNGC	1 cut(s)	459
NcoI	CCATGG	2 cut(s)	259, 463
NdeII	GATC	2 cut(s)	215, 394
NlaIII	CATG	5 cut(s)	71, 263, 347, 442, 467
NlaIV	GGNNCC	1 cut(s)	387
NsiI	ATGCAT	1 cut(s)	345
NspI	RCATGY	1 cut(s)	347
PaeI	GCATGC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	3 cut(s)	224, 423, 497
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	215
PvuII	CAGCTG	1 cut(s)	498
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
SatI	GCNGC	3 cut(s)	223, 422, 496
Sau3AI	GATC	2 cut(s)	215, 394
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	9 cut(s)	20, 41, 149, 198, 325, 355, 423, 455, 500
SfaNI	GCATC	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
SphI	GCATGC	1 cut(s)	347
Sse9I	AATT	4 cut(s)	126, 152, 425, 446
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	3 cut(s)	259, 330, 463
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	4 cut(s)	126, 152, 425, 446
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	3 cut(s)	222, 421, 495
TspRI	CASTG	1 cut(s)	282
Van91I	CCANNNNNTGG	1 cut(s)	265
XapI	RAATTY	2 cut(s)	152, 446
XceI	RCATGY	1 cut(s)	347
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.