Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002258.1

Orthogroup ID

OG0007550

Physical Location & Seq

Genomic Coordinates Reverse (-)

16649 .. 17095

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002258.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggcctataggtcagattgcgactactactacctcttcaagttcgtcttcctcggtgattctggcgtcggcaaattcaacctattttccaggttcatttcgcaacgagttcaacctcaagtctatatccaccatcggcgtcaaggtcgctacttcctagatctgttctcaaagttgtggctgcaaatctcatattatggtgcaaatttgtactgtggggaagatgatatatctgtgtttaggtcctcttttttcgtttgtttttccattttcagggttattttgatcgggctttggtgtaagggtccccttacaagctgcaattttggagtttcatgtacgaattcagctacaacggccatcctggacgttggtggtactggatttgtggctgctgaagaagatgtgtggagtttcccggttctgggctttgttactttcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

148

Amino Acids

16.98

Weight (kDa)

7.57

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007550)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0122091 RchiOBHm_Chr5g0058611
rosa_laevigata	RLG00000000205 RLG00000003782 RLG00000017045 RLG00000017949 RLG00000019524 RLG00000025887 RLG00000026633 RLG00000030624
rosa_multiflora	Rmu_sc0002258.1_g000003 Rmu_sc0005564.1_g000002
rosa_roxburghii	Rroxscaffold_6G00399590 Rroxscaffold_6G00422990
rosa_rugosa	Rorug02G0365600 Rorug05G0530100 Rorug07G0081400
rosa_samantha	Rh2BG641400 Rh2DG652300 Rh4AG117200 Rh4AG296500 Rh4CG017700 Rh5AG418800 Rh5BG435000 Rh6BG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	3 cut(s)	74, 205, 343
AcuI	CTGAAG	1 cut(s)	417
AcyI	GRCGYC	2 cut(s)	66, 139
AfaI	GTAC	3 cut(s)	212, 340, 379
AfiI	CCNNNNNNNGG	3 cut(s)	273, 424, 425
AgsI	TTSAA	3 cut(s)	40, 79, 113
AjnI	CCWGG	2 cut(s)	89, 363
AluBI	AGCT	2 cut(s)	318, 350
AluI	AGCT	2 cut(s)	318, 350
AoxI	GGCC	2 cut(s)	3, 357
ApeKI	GCWGC	3 cut(s)	181, 318, 392
ApoI	RAATTY	3 cut(s)	74, 205, 343
AspS9I	GGNCC	2 cut(s)	243, 305
AsuC2I	CCSGG	1 cut(s)	419
AsuHPI	GGTGA	1 cut(s)	68
AvaII	GGWCC	2 cut(s)	243, 305
BbsI	GAAGAC	1 cut(s)	40
BbvI	GCAGC	3 cut(s)	168, 305, 379
BccI	CCATC	2 cut(s)	141, 368
BceAI	ACGGC	1 cut(s)	372
BciT130I	CCWGG	2 cut(s)	91, 365
BcnI	CCSGG	1 cut(s)	419
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	7
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	3 cut(s)	182, 319, 393
BlsI	GCNGC	3 cut(s)	183, 320, 394
Bme1390I	CCNGG	3 cut(s)	91, 365, 419
Bme18I	GGWCC	2 cut(s)	243, 305
BmgT120I	GGNCC	2 cut(s)	243, 305
BmiI	GGNNCC	2 cut(s)	306, 307
BmrFI	CCNGG	3 cut(s)	91, 365, 419
BpiI	GAAGAC	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	102
BpuMI	CCSGG	1 cut(s)	419
BsaHI	GRCGYC	2 cut(s)	66, 139
BsaJI	CCNNGG	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 424, 425
Bse1I	ACTGG	1 cut(s)	385
BseBI	CCWGG	2 cut(s)	91, 365
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	3 cut(s)	273, 424, 425
BseNI	ACTGG	1 cut(s)	385
BseXI	GCAGC	3 cut(s)	168, 305, 379
BshFI	GGCC	2 cut(s)	5, 359
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	3 cut(s)	273, 424, 425
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	2 cut(s)	5, 359
Bsp143I	GATC	2 cut(s)	160, 285
BspANI	GGCC	2 cut(s)	5, 359
BspLI	GGNNCC	2 cut(s)	306, 307
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	2 cut(s)	160, 285
BssNI	GRCGYC	2 cut(s)	66, 139
Bst2UI	CCWGG	2 cut(s)	91, 365
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	2 cut(s)	66, 139
BstF5I	GGATG	1 cut(s)	360
BstKTI	GATC	2 cut(s)	163, 288
BstMBI	GATC	2 cut(s)	160, 285
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	2 cut(s)	91, 365
BstSCI	CCNGG	3 cut(s)	89, 363, 417
BstSFI	CTRYAG	1 cut(s)	7
BstV1I	GCAGC	3 cut(s)	168, 305, 379
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	5, 359
BtsCI	GGATG	1 cut(s)	360
Cfr13I	GGNCC	2 cut(s)	243, 305
CseI	GACGC	2 cut(s)	55, 128
Csp6I	GTAC	3 cut(s)	211, 339, 378
CviAII	CATG	1 cut(s)	336
CviJI	RGCY	8 cut(s)	5, 181, 292, 318, 350, 359, 392, 429
CviKI_1	RGCY	8 cut(s)	5, 181, 292, 318, 350, 359, 392, 429
CviQI	GTAC	3 cut(s)	211, 339, 378
DpnI	GATC	2 cut(s)	162, 287
DpnII	GATC	2 cut(s)	160, 285
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco47I	GGWCC	2 cut(s)	243, 305
Eco57I	CTGAAG	1 cut(s)	417
EcoO109I	RGGNCCY	2 cut(s)	243, 305
EcoRI	GAATTC	1 cut(s)	343
EcoRII	CCWGG	2 cut(s)	89, 363
FaeI	CATG	1 cut(s)	339
FaiI	YATR	6 cut(s)	9, 126, 193, 198, 230, 337
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	1 cut(s)	335
Fnu4HI	GCNGC	3 cut(s)	182, 319, 393
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	3 cut(s)	182, 319, 393
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	3 cut(s)	182, 319, 393
HaeIII	GGCC	2 cut(s)	5, 359
HapII	CCGG	1 cut(s)	419
HgaI	GACGC	2 cut(s)	55, 128
Hin1I	GRCGYC	2 cut(s)	66, 139
Hin1II	CATG	1 cut(s)	339
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	1 cut(s)	68
Hpy188I	TCNGA	1 cut(s)	16
Hpy99I	CGWCG	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	3 cut(s)	184, 203, 321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	2 cut(s)	66, 139
Hsp92II	CATG	1 cut(s)	339
KflI	GGGWCCC	1 cut(s)	305
Kzo9I	GATC	2 cut(s)	160, 285
LpnPI	CCDG	9 cut(s)	48, 76, 103, 259, 350, 366, 377, 410, 432
Lsp1109I	GCAGC	3 cut(s)	168, 305, 379
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	2 cut(s)	162, 287
MboI	GATC	2 cut(s)	160, 285
MboII	GAAGA	5 cut(s)	28, 40, 233, 410, 413
MflI	RGATCY	1 cut(s)	160
MluCI	AATT	4 cut(s)	74, 205, 322, 343
MnlI	CCTC	4 cut(s)	44, 62, 126, 256
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	3 cut(s)	91, 365, 419
MvaI	CCWGG	2 cut(s)	91, 365
MwoI	GCNNNNNNNGC	1 cut(s)	356
NciI	CCSGG	1 cut(s)	419
NdeII	GATC	2 cut(s)	160, 285
NlaIII	CATG	1 cut(s)	339
NlaIV	GGNNCC	2 cut(s)	306, 307
PfeI	GAWTC	1 cut(s)	59
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	3 cut(s)	183, 320, 394
PpuMI	RGGWCCY	2 cut(s)	243, 305
Psp5II	RGGWCCY	2 cut(s)	243, 305
Psp6I	CCWGG	2 cut(s)	89, 363
PspGI	CCWGG	2 cut(s)	89, 363
PspN4I	GGNNCC	2 cut(s)	306, 307
PspPI	GGNCC	2 cut(s)	243, 305
PspPPI	RGGWCCY	2 cut(s)	243, 305
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	3 cut(s)	212, 340, 379
RsaNI	GTAC	3 cut(s)	211, 339, 378
SatI	GCNGC	3 cut(s)	182, 319, 393
Sau3AI	GATC	2 cut(s)	160, 285
Sau96I	GGNCC	2 cut(s)	243, 305
ScrFI	CCNGG	3 cut(s)	91, 365, 419
SfcI	CTRYAG	1 cut(s)	7
SinI	GGWCC	2 cut(s)	243, 305
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
Sse9I	AATT	4 cut(s)	74, 205, 322, 343
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	3 cut(s)	89, 363, 417
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	1 cut(s)	372
TasI	AATT	4 cut(s)	74, 205, 322, 343
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	59
TseI	GCWGC	3 cut(s)	181, 318, 392
TspDTI	ATGAA	2 cut(s)	85, 324
VpaK11BI	GGWCC	2 cut(s)	243, 305
XapI	RAATTY	3 cut(s)	74, 205, 343
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.