Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0007550

Physical Location & Seq

Genomic Coordinates Reverse (-)

962258 .. 962912

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000205

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGTGCTTGCCTGAGCTATGTCTCAGCTTCCCTGTGCTATGTCTCAGATCTGAGGCTTTTGCCACTTGCTTTATCTCTTTTTTTCTCCTTCAGTCTCTTTCCCTTCTCCTTCCATCTTGCCTCACTTTTCTTTCTGCACCTTAGCCCCAAATTTTCTCTCACTCATTCCTCACCACCCATCACCTTCCTGTACCCACCATATCTCATCTATGGATCTTGTTGCCCAGATTTTTTCTTTTTTTCCTCTTCAAATCGGTACCATGGCTTGGTTCTTGCAGTGACTCCTCTCAAACGCGATTTCTCGCATCTCACTCTGAAGATAGGTAGAGCTTTGGCTCGGGTGCATGCACCACCTCCTTCTATGTTCTATTATCGGGGTCTACTGGCTCCATGTGTTCCGAACTTCGTTTGCCCAGATTTGTTCTCTGAGTTGTGGCTGCAAATCTCATGTTATGGTACAGATTTCTACAATGGGGATGATGATGAATCTGGGTCTCTTTTCAAGCTGCAATTTTGGAGTTCCATGTATGGATTCAGCTACGACGGCCATGGTGGACGTTGGTGGTGCTGGATCTGTGGCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

22.13

Weight (kDa)

7.01

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007550)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0122091 RchiOBHm_Chr5g0058611
rosa_laevigata	RLG00000000205 RLG00000003782 RLG00000017045 RLG00000017949 RLG00000019524 RLG00000025887 RLG00000026633 RLG00000030624
rosa_multiflora	Rmu_sc0002258.1_g000003 Rmu_sc0005564.1_g000002
rosa_roxburghii	Rroxscaffold_6G00399590 Rroxscaffold_6G00422990
rosa_rugosa	Rorug02G0365600 Rorug05G0530100 Rorug07G0081400
rosa_samantha	Rh2BG641400 Rh2DG652300 Rh4AG117200 Rh4AG296500 Rh4CG017700 Rh5AG418800 Rh5BG435000 Rh6BG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	258
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	382
AccII	CGCG	1 cut(s)	297
AciI	CCGC	1 cut(s)	582
AclWI	GGATC	2 cut(s)	223, 581
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	2 cut(s)	76, 338
AfaI	GTAC	3 cut(s)	194, 260, 460
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	252, 505
AluBI	AGCT	5 cut(s)	18, 29, 332, 508, 540
AluI	AGCT	5 cut(s)	18, 29, 332, 508, 540
Alw26I	GTCTC	4 cut(s)	28, 49, 101, 501
AlwI	GGATC	2 cut(s)	223, 581
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	1 cut(s)	547
ApeKI	GCWGC	2 cut(s)	439, 508
ApoI	RAATTY	1 cut(s)	152
Asp718I	GGTACC	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	165, 175
AvaI	CYCGRG	1 cut(s)	339
BanI	GGYRCC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	426, 495
BccI	CCATC	2 cut(s)	123, 188
BceAI	ACGGC	1 cut(s)	562
BcoDI	GTCTC	4 cut(s)	28, 49, 101, 501
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	3 cut(s)	440, 509, 583
BlsI	GCNGC	3 cut(s)	441, 510, 584
BmeT110I	CYCGRG	1 cut(s)	339
BmiI	GGNNCC	2 cut(s)	260, 390
BmsI	GCATC	1 cut(s)	316
Bpu10I	CCTNAGC	2 cut(s)	14, 143
BsaI	GGTCTC	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	262, 550
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	262, 550
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMII	CTCAG	5 cut(s)	5, 39, 44, 60, 420
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	426, 495
BsgI	GTGCAG	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	549
BshNI	GGYRCC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	339
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	4 cut(s)	28, 49, 101, 501
BsnI	GGCC	1 cut(s)	549
Bso31I	GGTCTC	1 cut(s)	501
BsoBI	CYCGRG	1 cut(s)	339
Bsp143I	GATC	3 cut(s)	49, 215, 573
Bsp19I	CCATGG	2 cut(s)	262, 550
BspACI	CCGC	1 cut(s)	582
BspANI	GGCC	1 cut(s)	549
BspCNI	CTCAG	5 cut(s)	6, 38, 45, 59, 421
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	260, 390
BspPI	GGATC	2 cut(s)	223, 581
BspT107I	GGYRCC	1 cut(s)	258
BspTNI	GGTCTC	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	390
BssECI	CCNNGG	2 cut(s)	262, 550
BssMI	GATC	3 cut(s)	49, 215, 573
BssT1I	CCWWGG	2 cut(s)	262, 550
Bst6I	CTCTTC	1 cut(s)	253
BstC8I	GCNNGC	2 cut(s)	10, 348
BstDEI	CTNAG	6 cut(s)	14, 25, 46, 53, 143, 429
BstDSI	CCRYGG	2 cut(s)	262, 550
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	1 cut(s)	297
BstKTI	GATC	3 cut(s)	52, 218, 576
BstMAI	GTCTC	4 cut(s)	28, 49, 101, 501
BstMBI	GATC	3 cut(s)	49, 215, 573
BstMWI	GCNNNNNNNGC	1 cut(s)	546
BstNSI	RCATGY	1 cut(s)	350
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	426, 495
BstX2I	RGATCY	3 cut(s)	49, 215, 573
BstYI	RGATCY	3 cut(s)	49, 215, 573
BsuRI	GGCC	1 cut(s)	549
BtgI	CCRYGG	2 cut(s)	262, 550
BtsCI	GGATG	1 cut(s)	484
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	10, 348
Csp6I	GTAC	3 cut(s)	193, 259, 459
CviAII	CATG	6 cut(s)	263, 347, 393, 450, 526, 551
CviQI	GTAC	3 cut(s)	193, 259, 459
DdeI	CTNAG	6 cut(s)	14, 25, 46, 53, 143, 429
DpnI	GATC	3 cut(s)	51, 217, 575
DpnII	GATC	3 cut(s)	49, 215, 573
EaeI	YGGCCR	1 cut(s)	547
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Eco130I	CCWWGG	2 cut(s)	262, 550
Eco31I	GGTCTC	1 cut(s)	501
Eco57I	CTGAAG	2 cut(s)	76, 338
Eco88I	CYCGRG	1 cut(s)	339
EcoT14I	CCWWGG	2 cut(s)	262, 550
ErhI	CCWWGG	2 cut(s)	262, 550
FaeI	CATG	6 cut(s)	266, 350, 396, 453, 529, 554
FatI	CATG	6 cut(s)	262, 346, 392, 449, 525, 550
FblI	GTMKAC	1 cut(s)	382
Fnu4HI	GCNGC	3 cut(s)	440, 509, 583
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	3 cut(s)	440, 509, 583
GluI	GCNGC	3 cut(s)	440, 509, 583
HaeIII	GGCC	1 cut(s)	549
Hin1II	CATG	6 cut(s)	266, 350, 396, 453, 529, 554
HinfI	GANTC	3 cut(s)	283, 488, 534
HphI	GGTGA	2 cut(s)	165, 175
Hpy166II	GTNNAC	2 cut(s)	383, 557
Hpy188I	TCNGA	5 cut(s)	49, 54, 318, 402, 430
Hpy8I	GTNNAC	2 cut(s)	383, 557
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	5 cut(s)	100, 115, 121, 196, 369
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	6 cut(s)	139, 278, 346, 350, 442, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	546
HpyF3I	CTNAG	6 cut(s)	14, 25, 46, 53, 143, 429
HpySE526I	ACGT	1 cut(s)	559
Hsp92II	CATG	6 cut(s)	266, 350, 396, 453, 529, 554
KpnI	GGTACC	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	49, 215, 573
LmnI	GCTCC	1 cut(s)	394
LpnPI	CCDG	8 cut(s)	26, 47, 203, 240, 371, 429, 477, 556
Lsp1109I	GCAGC	2 cut(s)	426, 495
LweI	GCATC	1 cut(s)	316
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	3 cut(s)	51, 217, 575
MboI	GATC	3 cut(s)	49, 215, 573
MboII	GAAGA	2 cut(s)	240, 331
MflI	RGATCY	3 cut(s)	49, 215, 573
MluCI	AATT	2 cut(s)	152, 512
MlyI	GAGTC	1 cut(s)	277
MnlI	CCTC	6 cut(s)	48, 133, 181, 256, 297, 366
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	546
NcoI	CCATGG	2 cut(s)	262, 550
NdeII	GATC	3 cut(s)	49, 215, 573
NlaIII	CATG	6 cut(s)	266, 350, 396, 453, 529, 554
NlaIV	GGNNCC	2 cut(s)	260, 390
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	488, 534
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	3 cut(s)	441, 510, 584
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	260, 390
PsuI	RGATCY	3 cut(s)	49, 215, 573
RsaI	GTAC	3 cut(s)	194, 260, 460
RsaNI	GTAC	3 cut(s)	193, 259, 459
SatI	GCNGC	3 cut(s)	440, 509, 583
Sau3AI	GATC	3 cut(s)	49, 215, 573
SchI	GAGTC	1 cut(s)	277
SfaNI	GCATC	1 cut(s)	316
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	2 cut(s)	152, 512
SsiI	CCGC	1 cut(s)	582
StyI	CCWWGG	2 cut(s)	262, 550
TaiI	ACGT	1 cut(s)	562
TasI	AATT	2 cut(s)	152, 512
TauI	GCSGC	1 cut(s)	585
TfiI	GAWTC	2 cut(s)	488, 534
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	2 cut(s)	439, 508
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	501
TspRI	CASTG	1 cut(s)	285
Van91I	CCANNNNNTGG	1 cut(s)	268
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.