Rorug07G0081400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0007550
Physical Location & Seq
Reverse (-)
6395105 .. 6399038
3934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0081400.1

Sequence Viewer

Length: 1140 bp
ATGGCAGTGGTTGAGAATCTCGAGAATGCTGGGGTGGAGTTGGGGAAGACCGTGGGGTCCGCCTCAGCGAATCGGAACCCGGAGGTTACGACGGAGCAGCCATCGGCGGCTGCTGCTGGTGTTGCCGTGACATCCAACGATCAGGATCAGTCCTCGGCCAAGCACGGGCCTTTACGGCAGCGGCTCGAGGCGGCTCTACAGCAGCAGCAGTACGCGATGGTAAACGGGAACCAGAACGGTCAGCTGAGCTTCGATCATCACCAGCAGCGATCTAACGACGAGATGAACGGCGGGGATCACCACGACGTGGGGGACAGCTTCAATCGGGACATGAGGGAGCTGAGGGAGCTCTTCTCTAAGCTCAACCCCATGGCGGAGGAGTTTGTGCCTCCCTCACATGCTAACAACAACCATGGAATCAGCGGTGGGTTTGTTGACTTCACCGCACTGATGATGCAGAATGGAAACAGAATCGGACAAATTAACGGTGGTGGTTTTCCCGGCCGACGAAGGAATAATCAAGGAAAGAGGAGAATGAACAGCAGGACCAGTCTAGCCCAGCGAGAAGATAGAATTCGAAGGACTGTGTATGTGTCTGACATTGATCAACAGGTCACTGAGGAACAGCTCGCAGCGCTATTCATTACTTGTGGGCAGGTTGTTGACTGTCGAATTTGTGGTGACCCGAATTCTGTACTCCGTTTTGCCTTTATCGAGTTCACTGATGAAGAAGGTGCAAGGGCTGCTTTGAGTCTTGCCGGGACAATGCTTGGGTTCTACCCTGTGAGGGTGTTGCCTTCTAAGACAGCTATTGCACCTGTTAACCCAACATTCTTGCCTCGGACTGAAGATGAACGTGAGATGTGTGCAAGAACGATATACTGTACAAATATTGACAAGAAGGTTTCTCAAGCTGATGTTAAGCTCTTTTTTGAATCAGTTTGTGGAGAGGTTTATCGTCTGAGGCTGCTGGGAGACTATCACCACTCCACTCGTATTGCATTTGTTGAGTTTGTGATGGCTGAAAGTGCAATTGCTGCTCTCAACTGTAGTGGTGTGGTTTTGGGATCATTGCCAATCAGGGTAAGTCCATCCAAGACACCTGTTCGTCCACGCGCTCCTCGCCTTCCCATACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

379

Amino Acids

41.74

Weight (kDa)

6.57

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAM2 PF07145 117 - 133 8.1e-06 Ataxin-2 C-terminal region
RRM_1 PF00076 196 - 258 3.2e-12 RNA recognition motif
RRM_1 PF00076 293 - 360 2.8e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 646
AccB7I CCANNNNNTGG 1 cut(s) 307
AccII CGCG 2 cut(s) 215, 1116
AciI CCGC 8 cut(s) 60, 107, 181, 191, 291, 374, 423, 444
AclWI GGATC 3 cut(s) 153, 303, 1075
AcoI YGGCCR 2 cut(s) 156, 502
AcsI RAATTY 3 cut(s) 573, 672, 688
AcuI CTGAAG 1 cut(s) 867
AdeI CACNNNGTG 1 cut(s) 307
AfaI GTAC 3 cut(s) 212, 696, 886
AfeI AGCGCT 1 cut(s) 636
AfiI CCNNNNNNNGG 4 cut(s) 165, 307, 373, 787
AgsI TTSAA 2 cut(s) 322, 935
AjiI CACGTC 1 cut(s) 307
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 1 cut(s) 969
AlwI GGATC 3 cut(s) 153, 303, 1075
Ama87I CYCGRG 2 cut(s) 20, 185
Aor51HI AGCGCT 1 cut(s) 636
AoxI GGCC 3 cut(s) 156, 167, 502
ApoI RAATTY 3 cut(s) 573, 672, 688
AspLEI GCGC 2 cut(s) 637, 1118
AspS9I GGNCC 3 cut(s) 57, 167, 546
AsuC2I CCSGG 3 cut(s) 80, 501, 760
AsuHPI GGTGA 5 cut(s) 251, 290, 433, 692, 974
AsuII TTCGAA 1 cut(s) 577
AvaI CYCGRG 2 cut(s) 20, 185
AvaII GGWCC 2 cut(s) 57, 546
BanII GRGCYC 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 351
BbvCI CCTCAGC 2 cut(s) 64, 341
BccI CCATC 4 cut(s) 109, 211, 1012, 1099
BceAI ACGGC 3 cut(s) 110, 191, 304
BclI TGATCA 1 cut(s) 604
BcnI CCSGG 3 cut(s) 80, 501, 760
BcoDI GTCTC 1 cut(s) 969
BfaI CTAG 1 cut(s) 554
BfmI CTRYAG 2 cut(s) 197, 1048
BfoI RGCGCY 1 cut(s) 638
BfuAI ACCTGC 1 cut(s) 646
BglI GCCNNNNNGGC 1 cut(s) 175
BlpI GCTNAGC 1 cut(s) 245
Bme1390I CCNGG 3 cut(s) 80, 501, 760
Bme18I GGWCC 2 cut(s) 57, 546
BmeT110I CYCGRG 2 cut(s) 20, 185
BmgBI CACGTC 1 cut(s) 307
BmgT120I GGNCC 3 cut(s) 57, 167, 546
BmiI GGNNCC 3 cut(s) 58, 77, 230
BmrFI CCNGG 3 cut(s) 80, 501, 760
BmsI GCATC 1 cut(s) 444
BpiI GAAGAC 1 cut(s) 53
BplI GAGNNNNNCTC 2 cut(s) 338, 370
Bpu10I CCTNAGC 2 cut(s) 64, 341
Bpu1102I GCTNAGC 1 cut(s) 245
Bpu14I TTCGAA 1 cut(s) 577
BpuEI CTTGAG 1 cut(s) 894
BpuMI CCSGG 3 cut(s) 80, 501, 760
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 5 cut(s) 51, 153, 369, 412, 839
Bsc4I CCNNNNNNNGG 4 cut(s) 165, 307, 373, 787
Bse1I ACTGG 1 cut(s) 549
Bse3DI GCAATG 1 cut(s) 1070
Bse8I GATNNNNATC 1 cut(s) 144
BseDI CCNNGG 5 cut(s) 51, 153, 369, 412, 839
BseGI GGATG 2 cut(s) 131, 1091
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 4 cut(s) 165, 307, 373, 787
BseMI GCAATG 1 cut(s) 1070
BseMII CTCAG 5 cut(s) 78, 236, 332, 609, 953
BseNI ACTGG 1 cut(s) 549
BseRI GAGGAG 3 cut(s) 392, 544, 1110
BseX3I CGGCCG 1 cut(s) 502
BseYI CCCAGC 3 cut(s) 29, 558, 970
Bsh1236I CGCG 2 cut(s) 215, 1116
Bsh1285I CGRYCG 1 cut(s) 505
BshFI GGCC 3 cut(s) 158, 169, 504
BsiEI CGRYCG 1 cut(s) 505
BsiHKAI GWGCWC 1 cut(s) 351
BsiHKCI CYCGRG 2 cut(s) 20, 185
BsiSI CCGG 3 cut(s) 80, 501, 759
BslFI GGGAC 3 cut(s) 326, 341, 775
BslI CCNNNNNNNGG 4 cut(s) 165, 307, 373, 787
BsmAI GTCTC 1 cut(s) 969
BsmFI GGGAC 3 cut(s) 326, 341, 775
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 3 cut(s) 158, 169, 504
BsoBI CYCGRG 2 cut(s) 20, 185
Bsp119I TTCGAA 1 cut(s) 577
Bsp1286I GDGCHC 1 cut(s) 351
Bsp1407I TGTACA 1 cut(s) 884
Bsp143I GATC 7 cut(s) 139, 145, 253, 269, 295, 604, 1067
Bsp1720I GCTNAGC 1 cut(s) 245
Bsp19I CCATGG 2 cut(s) 369, 412
BspACI CCGC 8 cut(s) 60, 107, 181, 191, 291, 374, 423, 444
BspANI GGCC 3 cut(s) 158, 169, 504
BspCNI CTCAG 5 cut(s) 77, 237, 333, 610, 954
BspFNI CGCG 2 cut(s) 215, 1116
BspLI GGNNCC 3 cut(s) 58, 77, 230
BspMI ACCTGC 1 cut(s) 646
BspPI GGATC 3 cut(s) 153, 303, 1075
BspQI GCTCTTC 1 cut(s) 356
BspT104I TTCGAA 1 cut(s) 577
BsrDI GCAATG 1 cut(s) 1070
BsrGI TGTACA 1 cut(s) 884
BsrI ACTGG 1 cut(s) 549
BssECI CCNNGG 5 cut(s) 51, 153, 369, 412, 839
BssMI GATC 7 cut(s) 139, 145, 253, 269, 295, 604, 1067
BssT1I CCWWGG 2 cut(s) 369, 412
Bst4CI ACNGT 7 cut(s) 52, 239, 488, 586, 668, 884, 1049
Bst6I CTCTTC 1 cut(s) 356
BstAPI GCANNNNNTGC 2 cut(s) 743, 1037
BstAUI TGTACA 1 cut(s) 884
BstBI TTCGAA 1 cut(s) 577
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 7 cut(s) 64, 245, 341, 357, 618, 801, 962
BstDSI CCRYGG 3 cut(s) 51, 369, 412
BstEII GGTNACC 1 cut(s) 680
BstF5I GGATG 2 cut(s) 131, 1091
BstFNI CGCG 2 cut(s) 215, 1116
BstH2I RGCGCY 1 cut(s) 638
BstHHI GCGC 2 cut(s) 637, 1118
BstKTI GATC 7 cut(s) 142, 148, 256, 272, 298, 607, 1070
BstMAI GTCTC 1 cut(s) 969
BstMBI GATC 7 cut(s) 139, 145, 253, 269, 295, 604, 1067
BstMCI CGRYCG 1 cut(s) 505
BstMWI GCNNNNNNNGC 9 cut(s) 113, 122, 175, 346, 634, 743, 1028, 1037, 1122
BstNSI RCATGY 1 cut(s) 401
BstPI GGTNACC 1 cut(s) 680
BstSCI CCNGG 3 cut(s) 78, 499, 758
BstSFI CTRYAG 2 cut(s) 197, 1048
BstUI CGCG 2 cut(s) 215, 1116
BstV2I GAAGAC 1 cut(s) 53
BstZI CGGCCG 1 cut(s) 502
BsuRI GGCC 3 cut(s) 158, 169, 504
BtgI CCRYGG 3 cut(s) 51, 369, 412
BtgZI GCGATG 1 cut(s) 230
BtrI CACGTC 1 cut(s) 307
BtsCI GGATG 2 cut(s) 131, 1091
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 4 cut(s) 12, 446, 615, 720
BveI ACCTGC 1 cut(s) 646
Cac8I GCNNGC 1 cut(s) 630
CfoI GCGC 2 cut(s) 637, 1118
Cfr13I GGNCC 3 cut(s) 57, 167, 546
Csp6I GTAC 3 cut(s) 211, 695, 885
CspCI CAANNNNNGTGG 4 cut(s) 979, 1014, 1033, 1068
CviAII CATG 4 cut(s) 331, 370, 398, 413
CviQI GTAC 3 cut(s) 211, 695, 885
DdeI CTNAG 7 cut(s) 64, 245, 341, 357, 618, 801, 962
DpnI GATC 7 cut(s) 141, 147, 255, 271, 297, 606, 1069
DpnII GATC 7 cut(s) 139, 145, 253, 269, 295, 604, 1067
DraIII CACNNNGTG 1 cut(s) 307
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 2 cut(s) 156, 502
EagI CGGCCG 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
EciI GGCGGA 2 cut(s) 49, 389
Ecl136II GAGCTC 1 cut(s) 349
EclXI CGGCCG 1 cut(s) 502
Eco130I CCWWGG 2 cut(s) 369, 412
Eco24I GRGCYC 1 cut(s) 351
Eco47I GGWCC 2 cut(s) 57, 546
Eco47III AGCGCT 1 cut(s) 636
Eco52I CGGCCG 1 cut(s) 502
Eco53kI GAGCTC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 867
Eco88I CYCGRG 2 cut(s) 20, 185
Eco91I GGTNACC 1 cut(s) 680
EcoICRI GAGCTC 1 cut(s) 349
EcoO65I GGTNACC 1 cut(s) 680
EcoRI GAATTC 2 cut(s) 573, 688
EcoT14I CCWWGG 2 cut(s) 369, 412
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 2 cut(s) 369, 412
FaeI CATG 4 cut(s) 334, 373, 401, 416
FaiI YATR 7 cut(s) 332, 371, 399, 414, 591, 880, 1133
FalI AAGNNNNNCTT 2 cut(s) 730, 762
FaqI GGGAC 3 cut(s) 326, 341, 775
FatI CATG 4 cut(s) 330, 369, 397, 412
FauI CCCGC 1 cut(s) 284
FbaI TGATCA 1 cut(s) 604
FokI GGATG 2 cut(s) 118, 1078
FriOI GRGCYC 1 cut(s) 351
FspBI CTAG 1 cut(s) 554
GlaI GCGC 2 cut(s) 636, 1117
GsaI CCCAGC 3 cut(s) 33, 562, 974
HaeII RGCGCY 1 cut(s) 638
HaeIII GGCC 3 cut(s) 158, 169, 504
HapII CCGG 3 cut(s) 80, 501, 759
HhaI GCGC 2 cut(s) 637, 1118
Hin1II CATG 4 cut(s) 334, 373, 401, 416
Hin6I GCGC 2 cut(s) 635, 1116
HinP1I GCGC 2 cut(s) 635, 1116
HincII GTYRAC 3 cut(s) 436, 664, 823
HindII GTYRAC 3 cut(s) 436, 664, 823
HinfI GANTC 6 cut(s) 16, 70, 417, 471, 751, 935
HpaI GTTAAC 1 cut(s) 823
HpaII CCGG 3 cut(s) 80, 501, 759
HphI GGTGA 5 cut(s) 251, 290, 433, 692, 974
Hpy166II GTNNAC 6 cut(s) 223, 436, 664, 720, 823, 1112
Hpy188I TCNGA 5 cut(s) 75, 476, 598, 843, 963
Hpy188III TCNNGA 4 cut(s) 20, 22, 143, 326
Hpy8I GTNNAC 6 cut(s) 223, 436, 664, 720, 823, 1112
Hpy99I CGWCG 4 cut(s) 94, 281, 308, 510
HpyAV CCTTC 6 cut(s) 504, 573, 725, 807, 895, 1136
HpyCH4III ACNGT 7 cut(s) 52, 239, 488, 586, 668, 884, 1049
HpyCH4IV ACGT 2 cut(s) 306, 856
HpyCH4V TGCA 6 cut(s) 457, 737, 815, 869, 1001, 1031
HpyF10VI GCNNNNNNNGC 9 cut(s) 113, 122, 175, 346, 634, 743, 1028, 1037, 1122
HpyF3I CTNAG 7 cut(s) 64, 245, 341, 357, 618, 801, 962
HpySE526I ACGT 2 cut(s) 306, 856
Hsp92II CATG 4 cut(s) 334, 373, 401, 416
HspAI GCGC 2 cut(s) 635, 1116
Ksp22I TGATCA 1 cut(s) 604
KspAI GTTAAC 1 cut(s) 823
Kzo9I GATC 7 cut(s) 139, 145, 253, 269, 295, 604, 1067
LguI GCTCTTC 1 cut(s) 356
LmnI GCTCC 4 cut(s) 94, 337, 346, 1123
LweI GCATC 1 cut(s) 444
MaeI CTAG 1 cut(s) 554
MaeII ACGT 2 cut(s) 306, 856
MaeIII GTNAC 4 cut(s) 85, 127, 613, 680
MalI GATC 7 cut(s) 141, 147, 255, 271, 297, 606, 1069
MboI GATC 7 cut(s) 139, 145, 253, 269, 295, 604, 1067
MboII GAAGA 5 cut(s) 58, 343, 578, 740, 860
MfeI CAATTG 1 cut(s) 1032
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 5 cut(s) 480, 573, 672, 688, 1032
MlyI GAGTC 1 cut(s) 760
MmeI TCCRAC 1 cut(s) 159
MseI TTAA 3 cut(s) 483, 822, 921
MspA1I CMGCKG 3 cut(s) 181, 244, 423
MspI CCGG 3 cut(s) 80, 501, 759
MspR9I CCNGG 3 cut(s) 80, 501, 760
MunI CAATTG 1 cut(s) 1032
Mva1269I GAATGC 1 cut(s) 31
MvnI CGCG 2 cut(s) 215, 1116
MwoI GCNNNNNNNGC 9 cut(s) 113, 122, 175, 346, 634, 743, 1028, 1037, 1122
NciI CCSGG 3 cut(s) 80, 501, 760
NcoI CCATGG 2 cut(s) 369, 412
NdeII GATC 7 cut(s) 139, 145, 253, 269, 295, 604, 1067
NlaIII CATG 4 cut(s) 334, 373, 401, 416
NlaIV GGNNCC 3 cut(s) 58, 77, 230
NmeAIII GCCGAG 1 cut(s) 134
NmuCI GTSAC 3 cut(s) 127, 613, 680
NspI RCATGY 1 cut(s) 401
NspV TTCGAA 1 cut(s) 577
PaeR7I CTCGAG 2 cut(s) 20, 185
PciSI GCTCTTC 1 cut(s) 356
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 5 cut(s) 16, 70, 417, 471, 935
PflMI CCANNNNNTGG 1 cut(s) 307
PleI GAGTC 1 cut(s) 759
PpsI GAGTC 1 cut(s) 759
Psp124BI GAGCTC 1 cut(s) 351
PspEI GGTNACC 1 cut(s) 680
PspFI CCCAGC 3 cut(s) 29, 558, 970
PspN4I GGNNCC 3 cut(s) 58, 77, 230
PspPI GGNCC 3 cut(s) 57, 167, 546
PspXI VCTCGAGB 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 244
RsaI GTAC 3 cut(s) 212, 696, 886
RsaNI GTAC 3 cut(s) 211, 695, 885
SacI GAGCTC 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 356
SaqAI TTAA 3 cut(s) 483, 822, 921
Sau3AI GATC 7 cut(s) 139, 145, 253, 269, 295, 604, 1067
Sau96I GGNCC 3 cut(s) 57, 167, 546
SchI GAGTC 1 cut(s) 760
ScrFI CCNGG 3 cut(s) 80, 501, 760
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 1 cut(s) 444
SfcI CTRYAG 2 cut(s) 197, 1048
Sfr274I CTCGAG 2 cut(s) 20, 185
SfuI TTCGAA 1 cut(s) 577
SinI GGWCC 2 cut(s) 57, 546
SlaI CTCGAG 2 cut(s) 20, 185
SmlI CTYRAG 3 cut(s) 20, 185, 909
SmoI CTYRAG 3 cut(s) 20, 185, 909
Sse9I AATT 5 cut(s) 480, 573, 672, 688, 1032
SsiI CCGC 8 cut(s) 60, 107, 181, 191, 291, 374, 423, 444
SspI AATATT 1 cut(s) 892
SspMI CTAG 1 cut(s) 554
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 3 cut(s) 78, 499, 758
StyI CCWWGG 2 cut(s) 369, 412
TaaI ACNGT 7 cut(s) 52, 239, 488, 586, 668, 884, 1049
TaiI ACGT 2 cut(s) 309, 859
TaqI TCGA 6 cut(s) 21, 186, 252, 577, 670, 714
TasI AATT 5 cut(s) 480, 573, 672, 688, 1032
TatI WGTACW 2 cut(s) 694, 884
TauI GCSGC 3 cut(s) 110, 184, 194
TfiI GAWTC 5 cut(s) 16, 70, 417, 471, 935
Tru1I TTAA 3 cut(s) 483, 822, 921
Tru9I TTAA 3 cut(s) 483, 822, 921
TscAI CASTG 4 cut(s) 12, 453, 622, 727
TseFI GTSAC 3 cut(s) 127, 613, 680
Tsp45I GTSAC 3 cut(s) 127, 613, 680
TspDTI ATGAA 5 cut(s) 299, 551, 631, 741, 867
TspGWI ACGGA 2 cut(s) 107, 689
TspRI CASTG 4 cut(s) 12, 453, 622, 727
Van91I CCANNNNNTGG 1 cut(s) 307
VpaK11BI GGWCC 2 cut(s) 57, 546
XapI RAATTY 3 cut(s) 573, 672, 688
XceI RCATGY 1 cut(s) 401
XhoI CTCGAG 2 cut(s) 20, 185
XspI CTAG 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.