RLG00000025887

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0007550
Physical Location & Seq
Reverse (-)
48982949 .. 48983754
806 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025887

Sequence Viewer

Length: 690 bp
ATGGGTGCTTGCCTGAGCTATGTCTCAGCTTCCCTGAGCTATGTCTCAGATATGAGGCTTTTGCCTCTTGTTTCATCTCTTTTTTTCTCCTTTGGTCTCCTTCCCTTCTCCTTCCACCATGCCCCATTTTTCTTTCTGTACCTTAGCCCCAAATTTTCTCTAACTCATTCCTCACCACCCATCACCTTCTTGTACCCACCATCTCTCATCTCCGGATCTTGTTGCCCATATTTTTTCTTTTCCTTTTCCAATCGGTACCATGGCTTGGTTCTTGCAGTGACTCCTCTCAAACGCAATTTCTCGCGTCTCACTCGGAAGATAGGTAGAGCTTTGGCTCAGGTGCATGCATCACCTCCTTCTATGTTCTATTATCGGGGTCTATTGGCTCCATGTGTTCTGGGCTTCGTTTGCCTAGATTTGTTCTCTGAGTTGTGGCTGCAAATCTCATGTTATGGTGCAGATTTCTACTGTGGGGATGATGATAAATCTGTGTTTAGATCATCTATTTTCTTCCTTTTTTCTATTTTCAGGGTTATTTTGATCAGGCTTTGGTGTAGGGGTCTCTTTTCAAGCTGCAATTTTGGAGTTCCATGTATGGATTCAGCTATGACGGCCATGGTGGACGTTGGTGGTGCTGGATATGTGGCGACTGAAGATGATGAGAAGTTTAGAATTAGGTATGCCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

25.86

Weight (kDa)

8.68

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 255
AccB7I CCANNNNNTGG 1 cut(s) 265
AccII CGCG 1 cut(s) 304
AccIII TCCGGA 1 cut(s) 212
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 612
AcsI RAATTY 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 672
AfaI GTAC 3 cut(s) 140, 194, 257
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 1 cut(s) 570
AluBI AGCT 6 cut(s) 18, 29, 39, 329, 573, 605
AluI AGCT 6 cut(s) 18, 29, 39, 329, 573, 605
Alw26I GTCTC 5 cut(s) 28, 49, 101, 311, 566
AlwI GGATC 1 cut(s) 223
Aor13HI TCCGGA 1 cut(s) 212
AoxI GGCC 1 cut(s) 612
ApeKI GCWGC 2 cut(s) 436, 573
ApoI RAATTY 1 cut(s) 152
Asp718I GGTACC 1 cut(s) 255
AsuHPI GGTGA 3 cut(s) 165, 175, 342
BanI GGYRCC 1 cut(s) 255
BbvI GCAGC 2 cut(s) 423, 560
BccI CCATC 2 cut(s) 188, 208
BceAI ACGGC 1 cut(s) 627
BclI TGATCA 1 cut(s) 540
BcoDI GTCTC 5 cut(s) 28, 49, 101, 311, 566
BfaI CTAG 1 cut(s) 413
BisI GCNGC 2 cut(s) 437, 574
BlsI GCNGC 2 cut(s) 438, 575
BmiI GGNNCC 2 cut(s) 257, 387
BmsI GCATC 1 cut(s) 356
Bpu10I CCTNAGC 4 cut(s) 14, 35, 143, 336
BsaI GGTCTC 2 cut(s) 101, 566
BsaJI CCNNGG 2 cut(s) 259, 615
BsaWI WCCGGW 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 265
BseAI TCCGGA 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 259, 615
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMII CTCAG 6 cut(s) 5, 26, 39, 60, 350, 417
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 2 cut(s) 423, 560
BsgI GTGCAG 1 cut(s) 477
Bsh1236I CGCG 1 cut(s) 304
BshFI GGCC 1 cut(s) 614
BshNI GGYRCC 1 cut(s) 255
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 5 cut(s) 28, 49, 101, 311, 566
BsmBI CGTCTC 1 cut(s) 311
BsnI GGCC 1 cut(s) 614
Bso31I GGTCTC 2 cut(s) 101, 566
Bsp13I TCCGGA 1 cut(s) 212
Bsp143I GATC 3 cut(s) 215, 497, 540
Bsp19I CCATGG 2 cut(s) 259, 615
BspANI GGCC 1 cut(s) 614
BspCNI CTCAG 6 cut(s) 6, 27, 38, 59, 349, 418
BspEI TCCGGA 1 cut(s) 212
BspFNI CGCG 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 257, 387
BspPI GGATC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 255
BspTNI GGTCTC 2 cut(s) 101, 566
BssECI CCNNGG 2 cut(s) 259, 615
BssMI GATC 3 cut(s) 215, 497, 540
BssT1I CCWWGG 2 cut(s) 259, 615
Bst4CI ACNGT 1 cut(s) 470
BstC8I GCNNGC 2 cut(s) 10, 345
BstDEI CTNAG 7 cut(s) 14, 25, 35, 46, 143, 336, 426
BstDSI CCRYGG 2 cut(s) 259, 615
BstF5I GGATG 1 cut(s) 481
BstFNI CGCG 1 cut(s) 304
BstKTI GATC 3 cut(s) 218, 500, 543
BstMAI GTCTC 5 cut(s) 28, 49, 101, 311, 566
BstMBI GATC 3 cut(s) 215, 497, 540
BstMWI GCNNNNNNNGC 2 cut(s) 408, 611
BstNSI RCATGY 1 cut(s) 347
BstUI CGCG 1 cut(s) 304
BstV1I GCAGC 2 cut(s) 423, 560
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BsuRI GGCC 1 cut(s) 614
BtgI CCRYGG 2 cut(s) 259, 615
BtsCI GGATG 1 cut(s) 481
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 2 cut(s) 10, 345
CseI GACGC 1 cut(s) 293
Csp6I GTAC 3 cut(s) 139, 193, 256
CviAII CATG 7 cut(s) 119, 260, 344, 390, 447, 591, 616
CviQI GTAC 3 cut(s) 139, 193, 256
DdeI CTNAG 7 cut(s) 14, 25, 35, 46, 143, 336, 426
DpnI GATC 3 cut(s) 217, 499, 542
DpnII GATC 3 cut(s) 215, 497, 540
EaeI YGGCCR 1 cut(s) 612
Eco130I CCWWGG 2 cut(s) 259, 615
Eco31I GGTCTC 2 cut(s) 101, 566
Eco57I CTGAAG 1 cut(s) 672
EcoT14I CCWWGG 2 cut(s) 259, 615
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 2 cut(s) 259, 615
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 7 cut(s) 122, 263, 347, 393, 450, 594, 619
FatI CATG 7 cut(s) 118, 259, 343, 389, 446, 590, 615
FbaI TGATCA 1 cut(s) 540
Fnu4HI GCNGC 2 cut(s) 437, 574
FokI GGATG 1 cut(s) 488
Fsp4HI GCNGC 2 cut(s) 437, 574
FspBI CTAG 1 cut(s) 413
GluI GCNGC 2 cut(s) 437, 574
HaeIII GGCC 1 cut(s) 614
HapII CCGG 1 cut(s) 213
HgaI GACGC 1 cut(s) 293
Hin1II CATG 7 cut(s) 122, 263, 347, 393, 450, 594, 619
HinfI GANTC 2 cut(s) 280, 599
HpaII CCGG 1 cut(s) 213
HphI GGTGA 3 cut(s) 165, 175, 342
Hpy166II GTNNAC 1 cut(s) 622
Hpy188I TCNGA 3 cut(s) 49, 315, 427
Hpy188III TCNNGA 1 cut(s) 213
Hpy8I GTNNAC 1 cut(s) 622
HpyAV CCTTC 5 cut(s) 110, 115, 121, 196, 366
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 6 cut(s) 275, 343, 347, 439, 458, 576
HpyF10VI GCNNNNNNNGC 2 cut(s) 408, 611
HpyF3I CTNAG 7 cut(s) 14, 25, 35, 46, 143, 336, 426
HpySE526I ACGT 1 cut(s) 624
Hsp92II CATG 7 cut(s) 122, 263, 347, 393, 450, 594, 619
Kpn2I TCCGGA 1 cut(s) 212
KpnI GGTACC 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 540
Kzo9I GATC 3 cut(s) 215, 497, 540
LmnI GCTCC 1 cut(s) 391
LpnPI CCDG 8 cut(s) 26, 47, 226, 323, 383, 514, 529, 621
Lsp1109I GCAGC 2 cut(s) 423, 560
LweI GCATC 1 cut(s) 356
MaeI CTAG 1 cut(s) 413
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 1 cut(s) 277
MalI GATC 3 cut(s) 217, 499, 542
MboI GATC 3 cut(s) 215, 497, 540
MboII GAAGA 3 cut(s) 328, 502, 665
MflI RGATCY 1 cut(s) 215
MluCI AATT 4 cut(s) 152, 295, 577, 672
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 5 cut(s) 48, 75, 181, 294, 363
Mph1103I ATGCAT 1 cut(s) 349
MroI TCCGGA 1 cut(s) 212
MspI CCGG 1 cut(s) 213
MvnI CGCG 1 cut(s) 304
MwoI GCNNNNNNNGC 2 cut(s) 408, 611
NcoI CCATGG 2 cut(s) 259, 615
NdeII GATC 3 cut(s) 215, 497, 540
NlaIII CATG 7 cut(s) 122, 263, 347, 393, 450, 594, 619
NlaIV GGNNCC 2 cut(s) 257, 387
NmuCI GTSAC 1 cut(s) 277
NsiI ATGCAT 1 cut(s) 349
NspI RCATGY 1 cut(s) 347
PaeI GCATGC 1 cut(s) 347
PfeI GAWTC 1 cut(s) 599
PflMI CCANNNNNTGG 1 cut(s) 265
PkrI GCNGC 2 cut(s) 438, 575
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 257, 387
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 3 cut(s) 140, 194, 257
RsaNI GTAC 3 cut(s) 139, 193, 256
SatI GCNGC 2 cut(s) 437, 574
Sau3AI GATC 3 cut(s) 215, 497, 540
SchI GAGTC 1 cut(s) 274
SfaNI GCATC 1 cut(s) 356
SphI GCATGC 1 cut(s) 347
Sse9I AATT 4 cut(s) 152, 295, 577, 672
SspMI CTAG 1 cut(s) 413
StyI CCWWGG 2 cut(s) 259, 615
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 1 cut(s) 627
TasI AATT 4 cut(s) 152, 295, 577, 672
TfiI GAWTC 1 cut(s) 599
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 2 cut(s) 436, 573
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 63
TspRI CASTG 1 cut(s) 282
Van91I CCANNNNNTGG 1 cut(s) 265
XapI RAATTY 1 cut(s) 152
XceI RCATGY 1 cut(s) 347
XspI CTAG 1 cut(s) 413
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.