Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007550

Physical Location & Seq

Genomic Coordinates Reverse (-)

12385849 .. 12386553

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGTGCTTCCCTGAGCTATGTCTCAGTTTCCCTGAGCTATGTCTCAGATCTAGGGCTTATGCCTCTTGTTTCTTCTCTTTTTTTCTCCTTCGGTCTCCCCCCCTTCTCCTTCCATCTTGCCCCAATTTTCTTTCTGAACTTTAGCCCCAAATTTGCTCTAACCCATTCCTCACCACCCATCACTTTCTTTTACCCACCATCTCTCATCTCCAGATCTTGTTGCCTGGATTTCTTCTATTCCATTTCAAATCGGTACCATGGCTTGGTTCTTGCAGTGACTTCTCTCAAACGTGATTTCTCGCATCTTAATCGGAAGATAGGTAGAGCTTTGGCTCGGGTGCATGCACCACCTCCTTCTATGTTCTATTTTGGGGGTCTCTTGGCTCCTCCTGATCTGGGTTTTGTTTGCCTAGATTTGTTCTCTAAGTTGTGGCTGCAAATCTCATGTTATGGTGCAAATTTGTACTATGGGGAAGAGGATATATCTGTGTTTAAATCCTCTTTTTTCTTCTGTTTTTCCATTTTCAGGGTTATTTTGATCGGGCTTTGGTGTAGGGGTCTCCTTACAAGCTGCAATTTTGGAGTTCCATGTACGAATTCAGCTACGACGGCCATGGTGGACGTTGGTGGTGCTGGATTTGTGGCGGCTGCAGAAGATCTGGGCTTTGTTACTTTATTTCCTTCTTTTTTTCTTCTACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

25.8

Weight (kDa)

8.12

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007550)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0122091 RchiOBHm_Chr5g0058611
rosa_laevigata	RLG00000000205 RLG00000003782 RLG00000017045 RLG00000017949 RLG00000019524 RLG00000025887 RLG00000026633 RLG00000030624
rosa_multiflora	Rmu_sc0002258.1_g000003 Rmu_sc0005564.1_g000002
rosa_roxburghii	Rroxscaffold_6G00399590 Rroxscaffold_6G00422990
rosa_rugosa	Rorug02G0365600 Rorug05G0530100 Rorug07G0081400
rosa_samantha	Rh2BG641400 Rh2DG652300 Rh4AG117200 Rh4AG296500 Rh4CG017700 Rh5AG418800 Rh5BG435000 Rh6BG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	255
AccB7I	CCANNNNNTGG	1 cut(s)	265
AciI	CCGC	1 cut(s)	647
AcoI	YGGCCR	1 cut(s)	612
AcsI	RAATTY	3 cut(s)	152, 460, 598
AfaI	GTAC	3 cut(s)	257, 467, 595
AfiI	CCNNNNNNNGG	3 cut(s)	265, 398, 528
AgsI	TTSAA	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	5 cut(s)	18, 39, 329, 573, 605
AluI	AGCT	5 cut(s)	18, 39, 329, 573, 605
Alw26I	GTCTC	5 cut(s)	28, 49, 101, 383, 566
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	1 cut(s)	612
ApeKI	GCWGC	3 cut(s)	436, 573, 650
ApoI	RAATTY	3 cut(s)	152, 460, 598
Asp718I	GGTACC	1 cut(s)	255
AsuHPI	GGTGA	1 cut(s)	165
AvaI	CYCGRG	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	255
BbvI	GCAGC	3 cut(s)	423, 560, 637
BccI	CCATC	3 cut(s)	123, 188, 208
BceAI	ACGGC	1 cut(s)	627
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	5 cut(s)	28, 49, 101, 383, 566
BfaI	CTAG	2 cut(s)	53, 413
BfmI	CTRYAG	1 cut(s)	651
BglII	AGATCT	3 cut(s)	49, 215, 658
BisI	GCNGC	4 cut(s)	437, 574, 648, 651
BlsI	GCNGC	4 cut(s)	438, 575, 649, 652
Bme1390I	CCNGG	1 cut(s)	227
BmeT110I	CYCGRG	1 cut(s)	336
BmiI	GGNNCC	2 cut(s)	257, 387
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	313
BpmI	CTGGAG	1 cut(s)	196
Bpu10I	CCTNAGC	2 cut(s)	14, 35
BsaI	GGTCTC	3 cut(s)	101, 383, 566
BsaJI	CCNNGG	2 cut(s)	259, 615
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 398, 528
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	259, 615
BseLI	CCNNNNNNNGG	3 cut(s)	265, 398, 528
BseMII	CTCAG	4 cut(s)	5, 26, 39, 60
BseRI	GAGGAG	1 cut(s)	378
BseXI	GCAGC	3 cut(s)	423, 560, 637
BshFI	GGCC	1 cut(s)	614
BshNI	GGYRCC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	336
BslI	CCNNNNNNNGG	3 cut(s)	265, 398, 528
BsmAI	GTCTC	5 cut(s)	28, 49, 101, 383, 566
BsnI	GGCC	1 cut(s)	614
Bso31I	GGTCTC	3 cut(s)	101, 383, 566
BsoBI	CYCGRG	1 cut(s)	336
Bsp143I	GATC	5 cut(s)	49, 215, 394, 540, 658
Bsp19I	CCATGG	2 cut(s)	259, 615
BspACI	CCGC	1 cut(s)	647
BspANI	GGCC	1 cut(s)	614
BspCNI	CTCAG	4 cut(s)	6, 27, 38, 59
BspLI	GGNNCC	2 cut(s)	257, 387
BspMAI	CTGCAG	1 cut(s)	655
BspT107I	GGYRCC	1 cut(s)	255
BspTNI	GGTCTC	3 cut(s)	101, 383, 566
BssECI	CCNNGG	2 cut(s)	259, 615
BssMI	GATC	5 cut(s)	49, 215, 394, 540, 658
BssT1I	CCWWGG	2 cut(s)	259, 615
Bst2UI	CCWGG	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	5 cut(s)	14, 25, 35, 46, 426
BstDSI	CCRYGG	2 cut(s)	259, 615
BstKTI	GATC	5 cut(s)	52, 218, 397, 543, 661
BstMAI	GTCTC	5 cut(s)	28, 49, 101, 383, 566
BstMBI	GATC	5 cut(s)	49, 215, 394, 540, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	611
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	651
BstV1I	GCAGC	3 cut(s)	423, 560, 637
BstX2I	RGATCY	3 cut(s)	49, 215, 658
BstYI	RGATCY	3 cut(s)	49, 215, 658
BsuRI	GGCC	1 cut(s)	614
BtgI	CCRYGG	2 cut(s)	259, 615
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	345
Csp6I	GTAC	3 cut(s)	256, 466, 594
CviAII	CATG	5 cut(s)	260, 344, 447, 591, 616
CviQI	GTAC	3 cut(s)	256, 466, 594
DdeI	CTNAG	5 cut(s)	14, 25, 35, 46, 426
DpnI	GATC	5 cut(s)	51, 217, 396, 542, 660
DpnII	GATC	5 cut(s)	49, 215, 394, 540, 658
DraI	TTTAAA	1 cut(s)	496
EaeI	YGGCCR	1 cut(s)	612
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco130I	CCWWGG	2 cut(s)	259, 615
Eco31I	GGTCTC	3 cut(s)	101, 383, 566
Eco88I	CYCGRG	1 cut(s)	336
EcoRI	GAATTC	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	2 cut(s)	259, 615
ErhI	CCWWGG	2 cut(s)	259, 615
FaeI	CATG	5 cut(s)	263, 347, 450, 594, 619
FatI	CATG	5 cut(s)	259, 343, 446, 590, 615
Fnu4HI	GCNGC	4 cut(s)	437, 574, 648, 651
Fsp4HI	GCNGC	4 cut(s)	437, 574, 648, 651
FspBI	CTAG	2 cut(s)	53, 413
GluI	GCNGC	4 cut(s)	437, 574, 648, 651
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	614
Hin1II	CATG	5 cut(s)	263, 347, 450, 594, 619
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	3 cut(s)	49, 138, 315
Hpy188III	TCNNGA	2 cut(s)	213, 392
Hpy8I	GTNNAC	1 cut(s)	622
Hpy99I	CGWCG	1 cut(s)	613
HpyAV	CCTTC	5 cut(s)	100, 115, 121, 366, 693
HpyCH4IV	ACGT	2 cut(s)	292, 624
HpyCH4V	TGCA	7 cut(s)	275, 343, 347, 439, 458, 576, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	611
HpyF3I	CTNAG	5 cut(s)	14, 25, 35, 46, 426
HpySE526I	ACGT	2 cut(s)	292, 624
Hsp92II	CATG	5 cut(s)	263, 347, 450, 594, 619
KpnI	GGTACC	1 cut(s)	259
Kzo9I	GATC	5 cut(s)	49, 215, 394, 540, 658
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	3 cut(s)	423, 560, 637
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	53, 413
MaeII	ACGT	2 cut(s)	292, 624
MaeIII	GTNAC	2 cut(s)	277, 670
MalI	GATC	5 cut(s)	51, 217, 396, 542, 660
MboI	GATC	5 cut(s)	49, 215, 394, 540, 658
MboII	GAAGA	7 cut(s)	66, 226, 328, 488, 502, 668, 686
MflI	RGATCY	3 cut(s)	49, 215, 658
MluCI	AATT	5 cut(s)	126, 152, 460, 577, 598
MnlI	CCTC	6 cut(s)	75, 181, 363, 399, 472, 511
MseI	TTAA	2 cut(s)	309, 495
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	611
NcoI	CCATGG	2 cut(s)	259, 615
NdeII	GATC	5 cut(s)	49, 215, 394, 540, 658
NlaIII	CATG	5 cut(s)	263, 347, 450, 594, 619
NlaIV	GGNNCC	2 cut(s)	257, 387
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	347
PaeI	GCATGC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	4 cut(s)	438, 575, 649, 652
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	257, 387
PstI	CTGCAG	1 cut(s)	655
PsuI	RGATCY	3 cut(s)	49, 215, 658
RsaI	GTAC	3 cut(s)	257, 467, 595
RsaNI	GTAC	3 cut(s)	256, 466, 594
SaqAI	TTAA	2 cut(s)	309, 495
SatI	GCNGC	4 cut(s)	437, 574, 648, 651
Sau3AI	GATC	5 cut(s)	49, 215, 394, 540, 658
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	9 cut(s)	20, 41, 295, 325, 331, 355, 575, 607, 627
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	651
SphI	GCATGC	1 cut(s)	347
Sse9I	AATT	5 cut(s)	126, 152, 460, 577, 598
SsiI	CCGC	1 cut(s)	647
SspMI	CTAG	2 cut(s)	53, 413
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	2 cut(s)	259, 615
TaiI	ACGT	2 cut(s)	295, 627
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	5 cut(s)	126, 152, 460, 577, 598
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	1 cut(s)	650
Tru1I	TTAA	2 cut(s)	309, 495
Tru9I	TTAA	2 cut(s)	309, 495
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	3 cut(s)	436, 573, 650
Tsp45I	GTSAC	1 cut(s)	277
TspRI	CASTG	1 cut(s)	282
Van91I	CCANNNNNTGG	1 cut(s)	265
XapI	RAATTY	3 cut(s)	152, 460, 598
XceI	RCATGY	1 cut(s)	347
XspI	CTAG	2 cut(s)	53, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.