Rh4AG296500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0007550
Physical Location & Seq
Forward (+)
60981346 .. 60982534
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG296500.1

Sequence Viewer

Length: 666 bp
ATGTCTCAGATCTGGGGCTTCTGCCTCTTGTTTCTTCTCTTTTTTTTCTCCTTCGGTCTCCCTCCCTTCTCTTCCCATCTTGCCCCAATTTTCTTTCTGAACTTTAGCCCCAAATTTCCTCTAACCCATTCCTCACCACCCATCACTTTATTTTACCCACCATCTCTCATCTCCAGATCTTGTTGCCTGGATTTCTTCTATTCCATTTCAAATCGGTACCATGGCTTGATTCTTGCAGTGGCTTCTCTCAAACGCGATTTCTCGCATCTCAATCGGAAGATAGGTAGAGCTTTGGCTCGGGTGCATGCACCACCTCCTTCTATGTTCTATTTTCGGGGTCTCTTGGCTCCTCCTGATCTGGGTTTCGTTTGCCTAGATTTGTTCTCTAAGTTGTGGCTGCAAATCTCATGTTATGGTGCAAATTTGTACTGTGGGGAAGAGGATATATCTGTGTTTAGATCCTCTTTTTTCTTCTGTTTTTCCATTTTCAGGGTTATTTTGTTCGGGCTTTGGTGTTGGGGTCTCCTTACAAGCTGCAATTTTGGAGTTCCATGTACGAATTCAGCTACGACGGCCATGGTGGACGTTGGTGGTGGTGGATTTGTGGCGGCTGAAGAAGATCTGGGCTTTGTTTCTTTATTTCCTTCTTTTTTTCTTTTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.82

Weight (kDa)

8.05

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 216
AccII CGCG 1 cut(s) 255
AciI CCGC 1 cut(s) 608
AclWI GGATC 1 cut(s) 453
AcoI YGGCCR 1 cut(s) 573
AcsI RAATTY 3 cut(s) 113, 421, 559
AcuI CTGAAG 1 cut(s) 633
AfaI GTAC 3 cut(s) 218, 428, 556
AfiI CCNNNNNNNGG 2 cut(s) 359, 489
AgsI TTSAA 1 cut(s) 210
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 3 cut(s) 290, 534, 566
AluI AGCT 3 cut(s) 290, 534, 566
Alw26I GTCTC 4 cut(s) 9, 62, 344, 527
AlwI GGATC 1 cut(s) 453
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 1 cut(s) 573
ApeKI GCWGC 2 cut(s) 397, 534
ApoI RAATTY 3 cut(s) 113, 421, 559
Asp718I GGTACC 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 126
AvaI CYCGRG 1 cut(s) 297
BanI GGYRCC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 384, 521
BccI CCATC 3 cut(s) 84, 149, 169
BceAI ACGGC 1 cut(s) 588
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 1 cut(s) 188
BcoDI GTCTC 4 cut(s) 9, 62, 344, 527
BfaI CTAG 1 cut(s) 374
BglII AGATCT 3 cut(s) 9, 176, 619
BisI GCNGC 3 cut(s) 398, 535, 609
BlsI GCNGC 3 cut(s) 399, 536, 610
Bme1390I CCNGG 1 cut(s) 188
BmeT110I CYCGRG 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 218, 348
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 157
BsaI GGTCTC 3 cut(s) 62, 344, 527
BsaJI CCNNGG 2 cut(s) 220, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 489
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 2 cut(s) 220, 576
BseLI CCNNNNNNNGG 2 cut(s) 359, 489
BseMII CTCAG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 2 cut(s) 384, 521
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 1 cut(s) 575
BshNI GGYRCC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 297
BslI CCNNNNNNNGG 2 cut(s) 359, 489
BsmAI GTCTC 4 cut(s) 9, 62, 344, 527
BsnI GGCC 1 cut(s) 575
Bso31I GGTCTC 3 cut(s) 62, 344, 527
BsoBI CYCGRG 1 cut(s) 297
Bsp143I GATC 5 cut(s) 9, 176, 355, 458, 619
Bsp19I CCATGG 2 cut(s) 220, 576
BspACI CCGC 1 cut(s) 608
BspANI GGCC 1 cut(s) 575
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 218, 348
BspPI GGATC 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 216
BspTNI GGTCTC 3 cut(s) 62, 344, 527
BssECI CCNNGG 2 cut(s) 220, 576
BssMI GATC 5 cut(s) 9, 176, 355, 458, 619
BssT1I CCWWGG 2 cut(s) 220, 576
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 431
Bst6I CTCTTC 2 cut(s) 76, 432
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 2 cut(s) 6, 387
BstDSI CCRYGG 2 cut(s) 220, 576
BstFNI CGCG 1 cut(s) 255
BstKTI GATC 5 cut(s) 12, 179, 358, 461, 622
BstMAI GTCTC 4 cut(s) 9, 62, 344, 527
BstMBI GATC 5 cut(s) 9, 176, 355, 458, 619
BstMWI GCNNNNNNNGC 1 cut(s) 572
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 186
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 384, 521
BstX2I RGATCY 4 cut(s) 9, 176, 458, 619
BstYI RGATCY 4 cut(s) 9, 176, 458, 619
BsuRI GGCC 1 cut(s) 575
BtgI CCRYGG 2 cut(s) 220, 576
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 306
Csp6I GTAC 3 cut(s) 217, 427, 555
CviAII CATG 5 cut(s) 221, 305, 408, 552, 577
CviQI GTAC 3 cut(s) 217, 427, 555
DdeI CTNAG 2 cut(s) 6, 387
DpnI GATC 5 cut(s) 11, 178, 357, 460, 621
DpnII GATC 5 cut(s) 9, 176, 355, 458, 619
EaeI YGGCCR 1 cut(s) 573
Eam1104I CTCTTC 2 cut(s) 76, 432
EarI CTCTTC 2 cut(s) 76, 432
Eco130I CCWWGG 2 cut(s) 220, 576
Eco31I GGTCTC 3 cut(s) 62, 344, 527
Eco57I CTGAAG 1 cut(s) 633
Eco88I CYCGRG 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 559
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 2 cut(s) 220, 576
ErhI CCWWGG 2 cut(s) 220, 576
FaeI CATG 5 cut(s) 224, 308, 411, 555, 580
FaiI YATR 8 cut(s) 222, 306, 323, 409, 414, 446, 553, 578
FatI CATG 5 cut(s) 220, 304, 407, 551, 576
Fnu4HI GCNGC 3 cut(s) 398, 535, 609
Fsp4HI GCNGC 3 cut(s) 398, 535, 609
FspBI CTAG 1 cut(s) 374
GluI GCNGC 3 cut(s) 398, 535, 609
GsuI CTGGAG 1 cut(s) 157
HaeIII GGCC 1 cut(s) 575
Hin1II CATG 5 cut(s) 224, 308, 411, 555, 580
HinfI GANTC 1 cut(s) 229
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 583
Hpy188I TCNGA 3 cut(s) 9, 99, 276
Hpy188III TCNNGA 2 cut(s) 174, 353
Hpy8I GTNNAC 1 cut(s) 583
Hpy99I CGWCG 1 cut(s) 574
HpyAV CCTTC 4 cut(s) 61, 76, 327, 654
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 6 cut(s) 236, 304, 308, 400, 419, 537
HpyF10VI GCNNNNNNNGC 1 cut(s) 572
HpyF3I CTNAG 2 cut(s) 6, 387
HpySE526I ACGT 1 cut(s) 585
Hsp92II CATG 5 cut(s) 224, 308, 411, 555, 580
KpnI GGTACC 1 cut(s) 220
Kzo9I GATC 5 cut(s) 9, 176, 355, 458, 619
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 7 cut(s) 173, 187, 200, 344, 366, 475, 608
Lsp1109I GCAGC 2 cut(s) 384, 521
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 374
MaeII ACGT 1 cut(s) 585
MalI GATC 5 cut(s) 11, 178, 357, 460, 621
MboI GATC 5 cut(s) 9, 176, 355, 458, 619
MboII GAAGA 8 cut(s) 26, 63, 187, 289, 449, 463, 626, 629
MflI RGATCY 4 cut(s) 9, 176, 458, 619
MluCI AATT 5 cut(s) 87, 113, 421, 538, 559
MnlI CCTC 8 cut(s) 35, 72, 129, 142, 324, 360, 433, 472
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 572
NcoI CCATGG 2 cut(s) 220, 576
NdeII GATC 5 cut(s) 9, 176, 355, 458, 619
NlaIII CATG 5 cut(s) 224, 308, 411, 555, 580
NlaIV GGNNCC 2 cut(s) 218, 348
NspI RCATGY 1 cut(s) 308
PaeI GCATGC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 3 cut(s) 399, 536, 610
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 2 cut(s) 218, 348
PsuI RGATCY 4 cut(s) 9, 176, 458, 619
RsaI GTAC 3 cut(s) 218, 428, 556
RsaNI GTAC 3 cut(s) 217, 427, 555
SatI GCNGC 3 cut(s) 398, 535, 609
Sau3AI GATC 5 cut(s) 9, 176, 355, 458, 619
ScrFI CCNGG 1 cut(s) 188
SetI ASST 6 cut(s) 286, 292, 316, 536, 568, 588
SfaNI GCATC 1 cut(s) 274
SphI GCATGC 1 cut(s) 308
Sse9I AATT 5 cut(s) 87, 113, 421, 538, 559
SsiI CCGC 1 cut(s) 608
SspMI CTAG 1 cut(s) 374
StyD4I CCNGG 1 cut(s) 186
StyI CCWWGG 2 cut(s) 220, 576
TaaI ACNGT 1 cut(s) 431
TaiI ACGT 1 cut(s) 588
TaqII GACCGA 1 cut(s) 44
TasI AATT 5 cut(s) 87, 113, 421, 538, 559
TatI WGTACW 1 cut(s) 426
TauI GCSGC 1 cut(s) 611
TfiI GAWTC 1 cut(s) 229
TscAI CASTG 1 cut(s) 243
TseI GCWGC 2 cut(s) 397, 534
TspRI CASTG 1 cut(s) 243
XapI RAATTY 3 cut(s) 113, 421, 559
XceI RCATGY 1 cut(s) 308
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.