Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005564.1

Orthogroup ID

OG0007550

Physical Location & Seq

Genomic Coordinates Reverse (-)

582 .. 7915

Gene Structure 7334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005564.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

atgaagattgttgggacacgtggttacatgtcccctgagtatgttatggggggaaacttttccataaaatctgatgtctatagtttcggagtgttgatgctagaaatcctaagtggaaggaaaaacaatagcttctacaatgatgaacatgccatcaatatagttggctatgcatgggcgttatggagagaaggtgcaggactaagactaagggatccaagacttggcaattcatgtgataaaaatcaattcttgaggtacgtccatgttgccaatcaacacgctctcttgaaaaatccaggtggaaatgggcataagatggtcggttgtgtttttgtcaagatcaactccttcggcgcatgtgaaatgctccaactatgcattgcagcacagtgcctggccactttgacagcttcggggttcgaacctaggttagggatttggggaaacctaattgggttgtacaagtttgctgccatattactgattctatcaggagaaaacagggcaaatacttcattttggggttggtctgagggtcctgcgctacatgggattgagaatgtggtaaagccgaggccgaaagtaaacccttttggggatgccaagccgagggaagtgttactggaggagcgaggtaaggattggaggaagattgatcaacagttggagcatcgctctgttgacagatatacaccagttcgttcagattcagtggttggtgaactgaggttgtctgagccaactgacattattcttccagagcttccgagactagagatgcttgctctcactggaaaagcaatcgaaggtgatgttctttccgttgttgaagtgatcccagagagtttgactcaacagcttgtttggcacaagtacaagcaagatgtcagatatcaatgccccaaatttgctctaacccattcctcaccacccatcactttctttcacccaccatctctcatctccagatcttgttacctggatttcttttattccatttcaaatcggtaccatggcttggttcttgcagtggcttctctcaaacgcgatttctcgcgtctcaatcggaagataggtagagctttggctcgggtgcatgcacaacctacttctatgttctattttcgtggtcttttggctcctcctgatctgggtttcgtttacctagatttgttctctaagttgtggctgcaaatctcatgttatggtgcaaatttgggtctccttacaagctgcaattttggagttccatgtacgaattcagctacgacggccatggtggatgttggtggtgctggatttgttatggctgaagcttctgatgtcttcctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

445

Amino Acids

49.61

Weight (kDa)

8.89

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007550)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0122091 RchiOBHm_Chr5g0058611
rosa_laevigata	RLG00000000205 RLG00000003782 RLG00000017045 RLG00000017949 RLG00000019524 RLG00000025887 RLG00000026633 RLG00000030624
rosa_multiflora	Rmu_sc0002258.1_g000003 Rmu_sc0005564.1_g000002
rosa_roxburghii	Rroxscaffold_6G00399590 Rroxscaffold_6G00422990
rosa_rugosa	Rorug02G0365600 Rorug05G0530100 Rorug07G0081400
rosa_samantha	Rh2BG641400 Rh2DG652300 Rh4AG117200 Rh4AG296500 Rh4CG017700 Rh5AG418800 Rh5BG435000 Rh6BG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1011
AccB1I	GGYRCC	1 cut(s)	1011
AccB7I	CCANNNNNTGG	2 cut(s)	224, 1021
AccII	CGCG	2 cut(s)	1050, 1060
AclWI	GGATC	3 cut(s)	209, 222, 832
AcoI	YGGCCR	2 cut(s)	399, 1275
AcsI	RAATTY	3 cut(s)	908, 1216, 1261
AcuI	CTGAAG	1 cut(s)	1335
AcvI	CACGTG	1 cut(s)	20
AfaI	GTAC	5 cut(s)	260, 464, 878, 1013, 1258
AfiI	CCNNNNNNNGG	6 cut(s)	224, 434, 598, 612, 1021, 1154
AflIII	ACRYGT	2 cut(s)	17, 27
AgsI	TTSAA	3 cut(s)	292, 833, 1005
AjnI	CCWGG	3 cut(s)	298, 396, 981
AluBI	AGCT	8 cut(s)	132, 413, 766, 862, 1085, 1236, 1268, 1319
AluI	AGCT	8 cut(s)	132, 413, 766, 862, 1085, 1236, 1268, 1319
Alw26I	GTCTC	3 cut(s)	766, 1067, 1229
AlwI	GGATC	3 cut(s)	209, 222, 832
AlwNI	CAGNNNCTG	1 cut(s)	397
Ama87I	CYCGRG	1 cut(s)	1092
AoxI	GGCC	3 cut(s)	399, 578, 1275
ApeKI	GCWGC	4 cut(s)	386, 473, 1192, 1236
ApoI	RAATTY	3 cut(s)	908, 1216, 1261
Asp700I	GAANNNNTTC	1 cut(s)	58
Asp718I	GGTACC	1 cut(s)	1011
AspA2I	CCTAGG	1 cut(s)	428
AspLEI	GCGC	2 cut(s)	359, 547
AspS9I	GGNCC	1 cut(s)	539
AsuHPI	GGTGA	4 cut(s)	734, 824, 921, 941
AsuII	TTCGAA	1 cut(s)	423
AvaI	CYCGRG	1 cut(s)	1092
AvaII	GGWCC	1 cut(s)	539
AvrII	CCTAGG	1 cut(s)	428
BalI	TGGCCA	1 cut(s)	401
BamHI	GGATCC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	1011
BbrPI	CACGTG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	1321
BbvI	GCAGC	4 cut(s)	398, 460, 1179, 1223
BccI	CCATC	4 cut(s)	161, 313, 944, 964
BceAI	ACGGC	1 cut(s)	1290
BciT130I	CCWGG	3 cut(s)	300, 398, 983
BclI	TGATCA	1 cut(s)	658
BcoDI	GTCTC	3 cut(s)	766, 1067, 1229
BfaI	CTAG	4 cut(s)	101, 429, 776, 1169
BfmI	CTRYAG	1 cut(s)	79
BglII	AGATCT	1 cut(s)	971
BisI	GCNGC	4 cut(s)	387, 474, 1193, 1237
BlnI	CCTAGG	1 cut(s)	428
BlsI	GCNGC	4 cut(s)	388, 475, 1194, 1238
Bme1390I	CCNGG	3 cut(s)	300, 398, 983
Bme18I	GGWCC	1 cut(s)	539
BmeT110I	CYCGRG	1 cut(s)	1092
BmgT120I	GGNCC	1 cut(s)	539
BmiI	GGNNCC	4 cut(s)	216, 540, 1013, 1143
BmrFI	CCNGG	3 cut(s)	300, 398, 983
BmsI	GCATC	4 cut(s)	87, 592, 682, 771
BpiI	GAAGAC	1 cut(s)	1321
BplI	GAGNNNNNCTC	4 cut(s)	662, 694, 838, 870
BpmI	CTGGAG	2 cut(s)	647, 952
Bpu14I	TTCGAA	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	274
BsaAI	YACGTR	1 cut(s)	20
BsaBI	GATNNNNATC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	1229
BsaJI	CCNNGG	5 cut(s)	428, 575, 611, 1015, 1278
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	6 cut(s)	224, 434, 598, 612, 1021, 1154
Bse1I	ACTGG	3 cut(s)	630, 698, 799
Bse3DI	GCAATG	1 cut(s)	381
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	3 cut(s)	300, 398, 983
BseDI	CCNNGG	5 cut(s)	428, 575, 611, 1015, 1278
BseGI	GGATG	2 cut(s)	607, 1291
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	6 cut(s)	224, 434, 598, 612, 1021, 1154
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	4 cut(s)	27, 525, 719, 729
BseNI	ACTGG	3 cut(s)	630, 698, 799
BseRI	GAGGAG	2 cut(s)	644, 1134
BseXI	GCAGC	4 cut(s)	398, 460, 1179, 1223
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	2 cut(s)	1050, 1060
BshFI	GGCC	3 cut(s)	401, 580, 1277
BshNI	GGYRCC	1 cut(s)	1011
BsiHKCI	CYCGRG	1 cut(s)	1092
BslFI	GGGAC	2 cut(s)	16, 28
BslI	CCNNNNNNNGG	6 cut(s)	224, 434, 598, 612, 1021, 1154
BsmAI	GTCTC	3 cut(s)	766, 1067, 1229
BsmBI	CGTCTC	1 cut(s)	1067
BsmFI	GGGAC	2 cut(s)	16, 28
BsnI	GGCC	3 cut(s)	401, 580, 1277
Bso31I	GGTCTC	1 cut(s)	1229
BsoBI	CYCGRG	1 cut(s)	1092
Bsp119I	TTCGAA	1 cut(s)	423
Bsp1407I	TGTACA	1 cut(s)	462
Bsp143I	GATC	6 cut(s)	214, 342, 658, 837, 971, 1150
Bsp19I	CCATGG	2 cut(s)	1015, 1278
BspANI	GGCC	3 cut(s)	401, 580, 1277
BspCNI	CTCAG	4 cut(s)	28, 526, 720, 730
BspFNI	CGCG	2 cut(s)	1050, 1060
BspLI	GGNNCC	4 cut(s)	216, 540, 1013, 1143
BspPI	GGATC	3 cut(s)	209, 222, 832
BspT104I	TTCGAA	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	1011
BspTNI	GGTCTC	1 cut(s)	1229
BsrDI	GCAATG	1 cut(s)	381
BsrGI	TGTACA	1 cut(s)	462
BsrI	ACTGG	3 cut(s)	630, 698, 799
BssECI	CCNNGG	5 cut(s)	428, 575, 611, 1015, 1278
BssMI	GATC	6 cut(s)	214, 342, 658, 837, 971, 1150
BssT1I	CCWWGG	3 cut(s)	428, 1015, 1278
Bst2UI	CCWGG	3 cut(s)	300, 398, 983
Bst4CI	ACNGT	2 cut(s)	393, 666
BstAUI	TGTACA	1 cut(s)	462
BstBAI	YACGTR	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	423
BstC8I	GCNNGC	2 cut(s)	786, 1101
BstDEI	CTNAG	8 cut(s)	36, 110, 203, 209, 534, 728, 738, 1182
BstDSI	CCRYGG	2 cut(s)	1015, 1278
BstENI	CCTNNNNNAGG	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	607, 1291
BstFNI	CGCG	2 cut(s)	1050, 1060
BstHHI	GCGC	2 cut(s)	359, 547
BstKTI	GATC	6 cut(s)	217, 345, 661, 840, 974, 1153
BstMAI	GTCTC	3 cut(s)	766, 1067, 1229
BstMBI	GATC	6 cut(s)	214, 342, 658, 837, 971, 1150
BstMWI	GCNNNNNNNGC	2 cut(s)	868, 1274
BstNI	CCWGG	3 cut(s)	300, 398, 983
BstNSI	RCATGY	4 cut(s)	31, 152, 363, 1103
BstSCI	CCNGG	3 cut(s)	298, 396, 981
BstSFI	CTRYAG	1 cut(s)	79
BstUI	CGCG	2 cut(s)	1050, 1060
BstV1I	GCAGC	4 cut(s)	398, 460, 1179, 1223
BstV2I	GAAGAC	1 cut(s)	1321
BstX2I	RGATCY	2 cut(s)	214, 971
BstYI	RGATCY	2 cut(s)	214, 971
BsuRI	GGCC	3 cut(s)	401, 580, 1277
BtgI	CCRYGG	2 cut(s)	1015, 1278
BtgZI	GCGATG	1 cut(s)	659
BtsCI	GGATG	2 cut(s)	607, 1291
BtsI	GCAGTG	1 cut(s)	1038
BtsIMutI	CAGTG	4 cut(s)	398, 720, 792, 1038
Cac8I	GCNNGC	2 cut(s)	786, 1101
CaiI	CAGNNNCTG	1 cut(s)	397
CfoI	GCGC	2 cut(s)	359, 547
Cfr13I	GGNCC	1 cut(s)	539
CseI	GACGC	1 cut(s)	1049
Csp6I	GTAC	5 cut(s)	259, 463, 877, 1012, 1257
CviQI	GTAC	5 cut(s)	259, 463, 877, 1012, 1257
DdeI	CTNAG	8 cut(s)	36, 110, 203, 209, 534, 728, 738, 1182
DpnI	GATC	6 cut(s)	216, 344, 660, 839, 973, 1152
DpnII	GATC	6 cut(s)	214, 342, 658, 837, 971, 1150
EaeI	YGGCCR	2 cut(s)	399, 1275
Eco130I	CCWWGG	3 cut(s)	428, 1015, 1278
Eco31I	GGTCTC	1 cut(s)	1229
Eco32I	GATATC	1 cut(s)	896
Eco47I	GGWCC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	1335
Eco72I	CACGTG	1 cut(s)	20
Eco88I	CYCGRG	1 cut(s)	1092
EcoNI	CCTNNNNNAGG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	539
EcoRI	GAATTC	1 cut(s)	1261
EcoRII	CCWGG	3 cut(s)	298, 396, 981
EcoRV	GATATC	1 cut(s)	896
EcoT14I	CCWWGG	3 cut(s)	428, 1015, 1278
EcoT22I	ATGCAT	2 cut(s)	175, 383
ErhI	CCWWGG	3 cut(s)	428, 1015, 1278
Esp3I	CGTCTC	1 cut(s)	1067
FaqI	GGGAC	2 cut(s)	16, 28
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	4 cut(s)	387, 474, 1193, 1237
FokI	GGATG	2 cut(s)	614, 1298
Fsp4HI	GCNGC	4 cut(s)	387, 474, 1193, 1237
FspBI	CTAG	4 cut(s)	101, 429, 776, 1169
GlaI	GCGC	2 cut(s)	358, 546
GluI	GCNGC	4 cut(s)	387, 474, 1193, 1237
GsuI	CTGGAG	2 cut(s)	647, 952
HaeIII	GGCC	3 cut(s)	401, 580, 1277
HgaI	GACGC	1 cut(s)	1049
HhaI	GCGC	2 cut(s)	359, 547
Hin6I	GCGC	2 cut(s)	357, 545
HinP1I	GCGC	2 cut(s)	357, 545
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HindIII	AAGCTT	1 cut(s)	1317
HinfI	GANTC	3 cut(s)	487, 710, 853
HphI	GGTGA	4 cut(s)	734, 824, 921, 941
Hpy166II	GTNNAC	4 cut(s)	589, 685, 725, 1165
Hpy188I	TCNGA	9 cut(s)	73, 89, 535, 709, 739, 771, 893, 1071, 1324
Hpy188III	TCNNGA	7 cut(s)	253, 289, 340, 495, 761, 969, 1148
Hpy8I	GTNNAC	4 cut(s)	589, 685, 725, 1165
Hpy99I	CGWCG	1 cut(s)	1276
HpyAV	CCTTC	4 cut(s)	111, 185, 361, 803
HpyCH4III	ACNGT	2 cut(s)	393, 666
HpyCH4IV	ACGT	2 cut(s)	19, 261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	868, 1274
HpyF3I	CTNAG	8 cut(s)	36, 110, 203, 209, 534, 728, 738, 1182
HpySE526I	ACGT	2 cut(s)	19, 261
HspAI	GCGC	2 cut(s)	357, 545
KpnI	GGTACC	1 cut(s)	1015
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	6 cut(s)	214, 342, 658, 837, 971, 1150
LmnI	GCTCC	4 cut(s)	375, 631, 670, 1147
Lsp1109I	GCAGC	4 cut(s)	398, 460, 1179, 1223
LweI	GCATC	4 cut(s)	87, 592, 682, 771
MaeI	CTAG	4 cut(s)	101, 429, 776, 1169
MaeII	ACGT	2 cut(s)	19, 261
MaeIII	GTNAC	3 cut(s)	23, 621, 977
MalI	GATC	6 cut(s)	216, 344, 660, 839, 973, 1152
MboI	GATC	6 cut(s)	214, 342, 658, 837, 971, 1150
MboII	GAAGA	5 cut(s)	16, 664, 749, 1084, 1321
MflI	RGATCY	2 cut(s)	214, 971
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	7 cut(s)	229, 248, 453, 908, 1216, 1240, 1261
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	1 cut(s)	847
MmeI	TCCRAC	2 cut(s)	397, 648
Mox20I	TGGCCA	1 cut(s)	401
Mph1103I	ATGCAT	2 cut(s)	175, 383
MroXI	GAANNNNTTC	1 cut(s)	58
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	1 cut(s)	1336
Msp20I	TGGCCA	1 cut(s)	401
MspR9I	CCNGG	3 cut(s)	300, 398, 983
MvaI	CCWGG	3 cut(s)	300, 398, 983
MvnI	CGCG	2 cut(s)	1050, 1060
MwoI	GCNNNNNNNGC	2 cut(s)	868, 1274
NcoI	CCATGG	2 cut(s)	1015, 1278
NdeII	GATC	6 cut(s)	214, 342, 658, 837, 971, 1150
NlaIV	GGNNCC	4 cut(s)	216, 540, 1013, 1143
NmeAIII	GCCGAG	2 cut(s)	600, 636
NsiI	ATGCAT	2 cut(s)	175, 383
NspI	RCATGY	4 cut(s)	31, 152, 363, 1103
NspV	TTCGAA	1 cut(s)	423
PaeI	GCATGC	1 cut(s)	1103
PciI	ACATGT	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	487, 710
PflMI	CCANNNNNTGG	2 cut(s)	224, 1021
PkrI	GCNGC	4 cut(s)	388, 475, 1194, 1238
PleI	GAGTC	1 cut(s)	847
PmaCI	CACGTG	1 cut(s)	20
PmlI	CACGTG	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	847
Ppu21I	YACGTR	1 cut(s)	20
PpuMI	RGGWCCY	1 cut(s)	539
PscI	ACATGT	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	539
Psp6I	CCWGG	3 cut(s)	298, 396, 981
PspCI	CACGTG	1 cut(s)	20
PspGI	CCWGG	3 cut(s)	298, 396, 981
PspN4I	GGNNCC	4 cut(s)	216, 540, 1013, 1143
PspPI	GGNCC	1 cut(s)	539
PspPPI	RGGWCCY	1 cut(s)	539
PstNI	CAGNNNCTG	1 cut(s)	397
PsuI	RGATCY	2 cut(s)	214, 971
RsaI	GTAC	5 cut(s)	260, 464, 878, 1013, 1258
RsaNI	GTAC	5 cut(s)	259, 463, 877, 1012, 1257
SaqAI	TTAA	1 cut(s)	1336
SatI	GCNGC	4 cut(s)	387, 474, 1193, 1237
Sau3AI	GATC	6 cut(s)	214, 342, 658, 837, 971, 1150
Sau96I	GGNCC	1 cut(s)	539
SchI	GAGTC	1 cut(s)	847
ScrFI	CCNGG	3 cut(s)	300, 398, 983
SfaNI	GCATC	4 cut(s)	87, 592, 682, 771
SfcI	CTRYAG	1 cut(s)	79
SfuI	TTCGAA	1 cut(s)	423
SinI	GGWCC	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
SphI	GCATGC	1 cut(s)	1103
Sse9I	AATT	7 cut(s)	229, 248, 453, 908, 1216, 1240, 1261
SspMI	CTAG	4 cut(s)	101, 429, 776, 1169
StyD4I	CCNGG	3 cut(s)	298, 396, 981
StyI	CCWWGG	3 cut(s)	428, 1015, 1278
TaaI	ACNGT	2 cut(s)	393, 666
TaiI	ACGT	2 cut(s)	22, 264
TaqI	TCGA	2 cut(s)	423, 807
TasI	AATT	7 cut(s)	229, 248, 453, 908, 1216, 1240, 1261
TatI	WGTACW	2 cut(s)	462, 876
TfiI	GAWTC	2 cut(s)	487, 710
Tru1I	TTAA	1 cut(s)	1336
Tru9I	TTAA	1 cut(s)	1336
TscAI	CASTG	4 cut(s)	398, 720, 799, 1038
TseI	GCWGC	4 cut(s)	386, 473, 1192, 1236
TspDTI	ATGAA	4 cut(s)	17, 159, 222, 507
TspGWI	ACGGA	1 cut(s)	814
TspRI	CASTG	4 cut(s)	398, 720, 799, 1038
Van91I	CCANNNNNTGG	2 cut(s)	224, 1021
VpaK11BI	GGWCC	1 cut(s)	539
XagI	CCTNNNNNAGG	1 cut(s)	432
XapI	RAATTY	3 cut(s)	908, 1216, 1261
XceI	RCATGY	4 cut(s)	31, 152, 363, 1103
XmaJI	CCTAGG	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	58
XspI	CTAG	4 cut(s)	101, 429, 776, 1169
Zsp2I	ATGCAT	2 cut(s)	175, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.