Rh5AG418800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0007550
Physical Location & Seq
Reverse (-)
72264697 .. 72265041
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG418800.1

Sequence Viewer

Length: 345 bp
ATGTTCTATTTTCGGGGCCTCTTGGCTCCTCCTGATCTGGGTTTCGTTTGCCTAGATTTGTTCTCAAAGTTGTGGCTGCAAATCTCATGTTATGGTGCAAATTTGTACTGTGGGGAAGAGGATATATCTGTGGTTAGATCCTCTTTTTTCTTTTGTTTTTCCATTTTCAGGGTTATTTTGATTGGGCTTTGGTGTAGGCGTCTCCTTACAAGCTGCAATTTTGGAGTTCCATGTACGAATTCAGCTACAATGGCCATGGTGGACATTGGTGGTGCTGGATTTGTGGCGGTTGAAGAAGATCTGGGCTTTGTTACTTTTTTTCCTTCTTTTTTTCTTTTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.78

Weight (kDa)

4.56

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 287
AclWI GGATC 1 cut(s) 132
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 2 cut(s) 100, 238
AcyI GRCGYC 1 cut(s) 199
AfaI GTAC 2 cut(s) 107, 235
AfiI CCNNNNNNNGG 2 cut(s) 38, 168
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 2 cut(s) 213, 245
AluI AGCT 2 cut(s) 213, 245
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 1 cut(s) 132
AoxI GGCC 2 cut(s) 16, 252
ApeKI GCWGC 2 cut(s) 76, 213
ApoI RAATTY 2 cut(s) 100, 238
AspS9I GGNCC 1 cut(s) 16
BalI TGGCCA 1 cut(s) 254
BbvI GCAGC 2 cut(s) 63, 200
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 53
BglII AGATCT 1 cut(s) 298
BisI GCNGC 2 cut(s) 77, 214
BlsI GCNGC 2 cut(s) 78, 215
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 2 cut(s) 17, 27
BsaHI GRCGYC 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 168
BseDI CCNNGG 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 38, 168
BseRI GAGGAG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 63, 200
BshFI GGCC 2 cut(s) 18, 254
BslI CCNNNNNNNGG 2 cut(s) 38, 168
BsmAI GTCTC 1 cut(s) 206
BsmBI CGTCTC 1 cut(s) 206
BsnI GGCC 2 cut(s) 18, 254
Bsp143I GATC 3 cut(s) 34, 137, 298
Bsp19I CCATGG 1 cut(s) 255
BspACI CCGC 1 cut(s) 287
BspANI GGCC 2 cut(s) 18, 254
BspLI GGNNCC 2 cut(s) 17, 27
BspPI GGATC 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 3 cut(s) 34, 137, 298
BssNI GRCGYC 1 cut(s) 199
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 199
BstDSI CCRYGG 1 cut(s) 255
BstKTI GATC 3 cut(s) 37, 140, 301
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 3 cut(s) 34, 137, 298
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 63, 200
BstX2I RGATCY 2 cut(s) 137, 298
BstYI RGATCY 2 cut(s) 137, 298
BsuRI GGCC 2 cut(s) 18, 254
BtgI CCRYGG 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 16
CseI GACGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 106, 234
CviAII CATG 3 cut(s) 87, 231, 256
CviJI RGCY 8 cut(s) 18, 26, 76, 187, 213, 245, 254, 306
CviKI_1 RGCY 8 cut(s) 18, 26, 76, 187, 213, 245, 254, 306
CviQI GTAC 2 cut(s) 106, 234
DpnI GATC 3 cut(s) 36, 139, 300
DpnII GATC 3 cut(s) 34, 137, 298
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 16
EcoRI GAATTC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 3 cut(s) 90, 234, 259
FaiI YATR 5 cut(s) 88, 93, 125, 232, 257
FatI CATG 3 cut(s) 86, 230, 255
Fnu4HI GCNGC 2 cut(s) 77, 214
Fsp4HI GCNGC 2 cut(s) 77, 214
FspBI CTAG 1 cut(s) 53
GluI GCNGC 2 cut(s) 77, 214
HaeIII GGCC 2 cut(s) 18, 254
HgaI GACGC 1 cut(s) 188
Hin1I GRCGYC 1 cut(s) 199
Hin1II CATG 3 cut(s) 90, 234, 259
Hpy166II GTNNAC 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 333
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 3 cut(s) 79, 98, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
Hsp92I GRCGYC 1 cut(s) 199
Hsp92II CATG 3 cut(s) 90, 234, 259
Kzo9I GATC 3 cut(s) 34, 137, 298
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 5 cut(s) 23, 45, 154, 261, 287
Lsp1109I GCAGC 2 cut(s) 63, 200
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 310
MalI GATC 3 cut(s) 36, 139, 300
MboI GATC 3 cut(s) 34, 137, 298
MboII GAAGA 3 cut(s) 128, 305, 308
MflI RGATCY 2 cut(s) 137, 298
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 3 cut(s) 100, 217, 238
MluNI TGGCCA 1 cut(s) 254
MnlI CCTC 4 cut(s) 29, 39, 112, 151
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
Msp20I TGGCCA 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 251
NcoI CCATGG 1 cut(s) 255
NdeII GATC 3 cut(s) 34, 137, 298
NlaIII CATG 3 cut(s) 90, 234, 259
NlaIV GGNNCC 2 cut(s) 17, 27
PkrI GCNGC 2 cut(s) 78, 215
PspN4I GGNNCC 2 cut(s) 17, 27
PspPI GGNCC 1 cut(s) 16
PsuI RGATCY 2 cut(s) 137, 298
RsaI GTAC 2 cut(s) 107, 235
RsaNI GTAC 2 cut(s) 106, 234
SatI GCNGC 2 cut(s) 77, 214
Sau3AI GATC 3 cut(s) 34, 137, 298
Sau96I GGNCC 1 cut(s) 16
SetI ASST 2 cut(s) 215, 247
Sse9I AATT 3 cut(s) 100, 217, 238
SsiI CCGC 1 cut(s) 287
SspMI CTAG 1 cut(s) 53
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 110
TasI AATT 3 cut(s) 100, 217, 238
TatI WGTACW 1 cut(s) 105
TseI GCWGC 2 cut(s) 76, 213
XapI RAATTY 2 cut(s) 100, 238
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.