RchiOBHm_Chr3g0477771

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
23707791 .. 23711056
3266 bp
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UTR
Exon/CDS
Intron
PRQ44305

Sequence Viewer

Length: 216 bp
ATGTTTATTAATATACCGAGTTCTGACCATCATATTAGTCTTTGGCAAAGAGAAGCAGAAAAACTCCAAGTCTCAAACTTTATCCTCACCTCCACAAAGTGGAGAAGTCTTCTGCATAAAACTTTGAATATTGTGTTTATCTTCAATTTAAACTATGCTTTCATTATTTTCTACTTTTACAATCATCAGTTGGCATCCTCCGGATTCGTCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.51

Weight (kDa)

9.22

Isoelectric Point (pI)

62.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 99
AccI GTMKAC 1 cut(s) 210
AccIII TCCGGA 1 cut(s) 200
AdeI CACNNNGTG 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 99
AgsI TTSAA 2 cut(s) 127, 145
Alw26I GTCTC 1 cut(s) 76
Aor13HI TCCGGA 1 cut(s) 200
AseI ATTAAT 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 101
BccI CCATC 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 1 cut(s) 214
BmsI GCATC 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 99
BseAI TCCGGA 1 cut(s) 200
BseGI GGATG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 99
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 76
Bsp13I TCCGGA 1 cut(s) 200
BspEI TCCGGA 1 cut(s) 200
BstF5I GGATG 1 cut(s) 194
BstMAI GTCTC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 194
DraI TTTAAA 1 cut(s) 150
DraIII CACNNNGTG 1 cut(s) 99
FaiI YATR 4 cut(s) 14, 33, 117, 156
FblI GTMKAC 1 cut(s) 210
FokI GGATG 1 cut(s) 181
FspBI CTAG 1 cut(s) 214
HapII CCGG 1 cut(s) 201
HinfI GANTC 1 cut(s) 204
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 201
Hpy8I GTNNAC 1 cut(s) 211
HpyCH4V TGCA 1 cut(s) 115
Kpn2I TCCGGA 1 cut(s) 200
LweI GCATC 1 cut(s) 203
MaeI CTAG 1 cut(s) 214
MboII GAAGA 2 cut(s) 101, 133
MluCI AATT 1 cut(s) 145
MnlI CCTC 3 cut(s) 95, 100, 208
MroI TCCGGA 1 cut(s) 200
MseI TTAA 2 cut(s) 9, 149
MspI CCGG 1 cut(s) 201
PfeI GAWTC 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 99
PshBI ATTAAT 1 cut(s) 9
SaqAI TTAA 2 cut(s) 9, 149
SetI ASST 1 cut(s) 92
SfaNI GCATC 1 cut(s) 203
SgeI CNNG 2 cut(s) 30, 80
Sse9I AATT 1 cut(s) 145
SspI AATATT 1 cut(s) 130
SspMI CTAG 1 cut(s) 214
TasI AATT 1 cut(s) 145
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 2 cut(s) 9, 149
Tru9I TTAA 2 cut(s) 9, 149
TspDTI ATGAA 1 cut(s) 151
Van91I CCANNNNNTGG 1 cut(s) 99
VspI ATTAAT 1 cut(s) 9
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.