Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010620

Physical Location & Seq

Genomic Coordinates Reverse (-)

38450416 .. 38451615

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002711

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCCACAATGATAATCAACGGCGAGGACGTGGATCGAATATCGGAGTTACCTGAAGCCATGAAGCTAGAAATCCTCTCACGGTTGCCTGCAAACGTTGGAGTCGATATGAGCACTGGTAAGGCATATTGTAGCAGAGTCTCATCATATTCATGTCGACCGCTGGCTAAACTTGATCACCAAACACATTATCCGAGAGATAGTGCTAGATTTCCCGTTCCTCGGCAGAAGAACACCGGATTTAATCGGCTCAAAGAGCTCACGTTGTTTGAGACTGATTTTGATGGAGTAGTCGTGGAGCTGCTTTCTAGATCCCCTAATCTTGAGATATTGATACTCAAGCCATCTCGTGGAAGTATAGATAAATATATTGAAATTTGTGATCTTCCCAAGCTCAAGAAGGTTGAATTTTGGCCTCAAGATAATAGCTACAAGATTGAAGCAGCCAATCTTCAAACTCTTATACACTTCGATTGTATGGGCTTTAGCCCGCTGCCGGACATCGGAGCACTCAACTGCGGTAACATAAAGGAGATCAAAATGTACCTTGGCCATTCTACCGTTACAAAGAATGAGTTGATCTTGCGCGCCTCCCTCGTATCAAAGGAGCAGAAAGGCTCTTGTCGTCTGGACGAACTTGGTCACATCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

218

Amino Acids

24.44

Weight (kDa)

6.95

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010620)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0477771 RchiOBHm_Chr3g0492151 RchiOBHm_Chr4g0410721 RchiOBHm_Chr6g0246591
rosa_laevigata	RLG00000002711
rosa_multiflora	Rmu_ssc0000134.1_g000010
rosa_roxburghii	Rroxscaffold_3G00221140 Rroxscaffold_3G00244930 Rroxscaffold_4G00301550 Rroxscaffold_4G00309800 Rroxscaffold_4G00330610 Rroxscaffold_5G00348660 Rroxscaffold_6G00402690
rosa_rugosa	Rorug04G0074400 Rorug07G0148500
rosa_samantha	Rh7AG285000 Rh7CG237300 Rh7CG304200 Rh7DG081600 Rh7DG288600
rosa_wichuraiana	Rw7G024330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccI	GTMKAC	1 cut(s)	157
AccII	CGCG	1 cut(s)	588
AciI	CCGC	3 cut(s)	161, 491, 519
AclI	AACGTT	1 cut(s)	96
AclWI	GGATC	2 cut(s)	42, 306
AcoI	YGGCCR	2 cut(s)	3, 550
AcsI	RAATTY	2 cut(s)	375, 407
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	4 cut(s)	222, 350, 496, 503
AgsI	TTSAA	4 cut(s)	374, 407, 440, 455
AjiI	CACGTC	1 cut(s)	31
AluBI	AGCT	5 cut(s)	67, 259, 301, 394, 429
AluI	AGCT	5 cut(s)	67, 259, 301, 394, 429
Alw21I	GWGCWC	3 cut(s)	116, 261, 511
Alw26I	GTCTC	2 cut(s)	145, 266
AlwI	GGATC	2 cut(s)	42, 306
AoxI	GGCC	3 cut(s)	3, 413, 550
ApeKI	GCWGC	3 cut(s)	301, 443, 493
ApoI	RAATTY	2 cut(s)	375, 407
AspLEI	GCGC	2 cut(s)	588, 590
AsuHPI	GGTGA	1 cut(s)	170
BalI	TGGCCA	2 cut(s)	5, 552
BanII	GRGCYC	1 cut(s)	261
BauI	CACGAG	1 cut(s)	348
Bbv12I	GWGCWC	3 cut(s)	116, 261, 511
BbvI	GCAGC	3 cut(s)	288, 455, 480
BccI	CCATC	2 cut(s)	278, 352
BceAI	ACGGC	1 cut(s)	37
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	145, 266
BfaI	CTAG	3 cut(s)	68, 207, 309
BisI	GCNGC	3 cut(s)	302, 444, 494
BlsI	GCNGC	3 cut(s)	303, 445, 495
BmgBI	CACGTC	1 cut(s)	31
BpuEI	CTTGAG	4 cut(s)	323, 344, 380, 402
BsaJI	CCNNGG	2 cut(s)	221, 547
BsaWI	WCCGGW	1 cut(s)	236
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	4 cut(s)	222, 350, 496, 503
Bse1I	ACTGG	1 cut(s)	121
BseDI	CCNNGG	2 cut(s)	221, 547
BseLI	CCNNNNNNNGG	4 cut(s)	222, 350, 496, 503
BseNI	ACTGG	1 cut(s)	121
BsePI	GCGCGC	1 cut(s)	586
BseXI	GCAGC	3 cut(s)	288, 455, 480
Bsh1236I	CGCG	1 cut(s)	588
Bsh1285I	CGRYCG	1 cut(s)	161
BshFI	GGCC	3 cut(s)	5, 415, 552
BsiEI	CGRYCG	1 cut(s)	161
BsiHKAI	GWGCWC	3 cut(s)	116, 261, 511
BsiSI	CCGG	2 cut(s)	237, 497
BslI	CCNNNNNNNGG	4 cut(s)	222, 350, 496, 503
BsmAI	GTCTC	2 cut(s)	145, 266
BsnI	GGCC	3 cut(s)	5, 415, 552
Bsp1286I	GDGCHC	3 cut(s)	116, 261, 511
Bsp143I	GATC	6 cut(s)	34, 175, 311, 382, 534, 579
BspACI	CCGC	3 cut(s)	161, 491, 519
BspANI	GGCC	3 cut(s)	5, 415, 552
BspFNI	CGCG	1 cut(s)	588
BspPI	GGATC	2 cut(s)	42, 306
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	221, 547
BssHII	GCGCGC	1 cut(s)	586
BssMI	GATC	6 cut(s)	34, 175, 311, 382, 534, 579
BssSI	CACGAG	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	547
Bst2BI	CACGAG	1 cut(s)	348
Bst4CI	ACNGT	2 cut(s)	84, 562
BstC8I	GCNNGC	4 cut(s)	90, 165, 491, 588
BstFNI	CGCG	1 cut(s)	588
BstHHI	GCGC	2 cut(s)	588, 590
BstKTI	GATC	6 cut(s)	37, 178, 314, 385, 537, 582
BstMAI	GTCTC	2 cut(s)	145, 266
BstMBI	GATC	6 cut(s)	34, 175, 311, 382, 534, 579
BstMCI	CGRYCG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstUI	CGCG	1 cut(s)	588
BstV1I	GCAGC	3 cut(s)	288, 455, 480
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	3 cut(s)	5, 415, 552
BtrI	CACGTC	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	4 cut(s)	90, 165, 491, 588
CfoI	GCGC	2 cut(s)	588, 590
Csp6I	GTAC	1 cut(s)	544
CviAII	CATG	2 cut(s)	61, 153
CviQI	GTAC	1 cut(s)	544
DpnI	GATC	6 cut(s)	36, 177, 313, 384, 536, 581
DpnII	GATC	6 cut(s)	34, 175, 311, 382, 534, 579
EaeI	YGGCCR	2 cut(s)	3, 550
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	547
Eco24I	GRGCYC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	2 cut(s)	64, 156
FatI	CATG	2 cut(s)	60, 152
FauI	CCCGC	1 cut(s)	498
FbaI	TGATCA	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	302, 444, 494
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	3 cut(s)	302, 444, 494
FspBI	CTAG	3 cut(s)	68, 207, 309
GlaI	GCGC	2 cut(s)	587, 589
GluI	GCNGC	3 cut(s)	302, 444, 494
HaeIII	GGCC	3 cut(s)	5, 415, 552
HapII	CCGG	2 cut(s)	237, 497
HhaI	GCGC	2 cut(s)	588, 590
Hin1II	CATG	2 cut(s)	64, 156
Hin6I	GCGC	2 cut(s)	586, 588
HinP1I	GCGC	2 cut(s)	586, 588
HincII	GTYRAC	1 cut(s)	158
HindII	GTYRAC	1 cut(s)	158
HinfI	GANTC	2 cut(s)	102, 138
HpaII	CCGG	2 cut(s)	237, 497
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	3 cut(s)	46, 195, 506
Hpy188III	TCNNGA	5 cut(s)	309, 323, 397, 419, 629
Hpy8I	GTNNAC	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	2 cut(s)	84, 562
HpyCH4IV	ACGT	3 cut(s)	30, 96, 263
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpySE526I	ACGT	3 cut(s)	30, 96, 263
Hsp92II	CATG	2 cut(s)	64, 156
HspAI	GCGC	2 cut(s)	586, 588
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	6 cut(s)	34, 175, 311, 382, 534, 579
LmnI	GCTCC	3 cut(s)	298, 506, 607
LpnPI	CCDG	7 cut(s)	66, 102, 102, 149, 250, 510, 614
Lsp1109I	GCAGC	3 cut(s)	288, 455, 480
MaeI	CTAG	3 cut(s)	68, 207, 309
MaeII	ACGT	3 cut(s)	30, 96, 263
MaeIII	GTNAC	4 cut(s)	48, 521, 562, 641
MalI	GATC	6 cut(s)	36, 177, 313, 384, 536, 581
MboI	GATC	6 cut(s)	34, 175, 311, 382, 534, 579
MboII	GAAGA	3 cut(s)	241, 377, 443
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	3 cut(s)	116, 261, 511
MlsI	TGGCCA	2 cut(s)	5, 552
MluCI	AATT	2 cut(s)	375, 407
MluNI	TGGCCA	2 cut(s)	5, 552
MlyI	GAGTC	2 cut(s)	111, 147
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	6 cut(s)	19, 86, 231, 426, 601, 605
Mox20I	TGGCCA	2 cut(s)	5, 552
MscI	TGGCCA	2 cut(s)	5, 552
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	151
Msp20I	TGGCCA	2 cut(s)	5, 552
MspA1I	CMGCKG	2 cut(s)	163, 493
MspI	CCGG	2 cut(s)	237, 497
MvnI	CGCG	1 cut(s)	588
MwoI	GCNNNNNNNGC	1 cut(s)	256
NdeII	GATC	6 cut(s)	34, 175, 311, 382, 534, 579
NlaIII	CATG	2 cut(s)	64, 156
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	641
PauI	GCGCGC	1 cut(s)	586
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 102
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	303, 445, 495
PleI	GAGTC	2 cut(s)	110, 146
PpsI	GAGTC	2 cut(s)	110, 146
Psp124BI	GAGCTC	1 cut(s)	261
Psp1406I	AACGTT	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	311
PteI	GCGCGC	1 cut(s)	586
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
RseI	CAYNNNNRTG	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	261
SalI	GTCGAC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	3 cut(s)	302, 444, 494
Sau3AI	GATC	6 cut(s)	34, 175, 311, 382, 534, 579
SchI	GAGTC	2 cut(s)	111, 147
SduI	GDGCHC	3 cut(s)	116, 261, 511
SmiMI	CAYNNNNRTG	1 cut(s)	151
SmlI	CTYRAG	4 cut(s)	323, 338, 395, 417
SmoI	CTYRAG	4 cut(s)	323, 338, 395, 417
Sse9I	AATT	2 cut(s)	375, 407
SsiI	CCGC	3 cut(s)	161, 491, 519
SspMI	CTAG	3 cut(s)	68, 207, 309
SstI	GAGCTC	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	2 cut(s)	84, 562
TaiI	ACGT	3 cut(s)	33, 99, 266
TaqI	TCGA	4 cut(s)	37, 105, 157, 471
TasI	AATT	2 cut(s)	375, 407
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	641
TseI	GCWGC	3 cut(s)	301, 443, 493
Tsp45I	GTSAC	1 cut(s)	641
TspDTI	ATGAA	2 cut(s)	77, 141
TspRI	CASTG	1 cut(s)	121
Van91I	CCANNNNNTGG	1 cut(s)	350
XapI	RAATTY	2 cut(s)	375, 407
XbaI	TCTAGA	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	157
XspI	CTAG	3 cut(s)	68, 207, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.