Rroxscaffold_6G00402690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0010620
Physical Location & Seq
Forward (+)
25101203 .. 25125067
23865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00402690.1

Sequence Viewer

Length: 1020 bp
ATGGCGAACCCGTGGGTGAAGTTTGGGAAGGTTTCGTGGCCGGTAGCTCGAGTTATCAATCTTGGAACAAAAACGGGTTTTTCGGCCTCCGCCGTCGTCTCCGGTGGTTCGCGCAGCGCAAGGCCGCCTCCCCGCACTGCGCACGATCGTCTTGAAGGTGTGGGAGGTGGTTTGGCACGCCCGGTGGCTGGTGGAGCGAGAGAGAGGATAGACATGATTAGCTGGCCGTACCACGTGGCTGTTACGTTTGCCCTACCTAAGAAGTTATCATTTTTCAAAAACATATCACGCTCTCTCTCTCTCTCTCTCTCTCGTTGCCGATCTAGAATGCCGAAGTTGACGATCTCGGGTTGCAAGCTACCATCCCACAAGCACCGACGACTCCTTACTCTAGTATGCATCCGAACCAAGCCGAGCGAGGGAAGCGTTGGTTGTCCAACATCATTGATCCAGCTTATCGGCTCATCTCCGGTGGCTACTCATCTTTTTACCACTTTCTTCTCGCCAATAAATTTCGCCATTACCTTATCGGCGCCCAATGTCCAACCATCACGAAAATGGCTGCAGCTGCCCTCCCCGAACGGAAATCGCTGCCTTAGCTTCACGGCGTCGCCACGACTTCATCCGGCCACCTATGGCCATGAATTTGATATCAATCTCTTCGTCTTGAAACCAGCTTTCCATTCATATATGCCTTGCATCCTATCATTCACCATAGACAACGAATCGAACAAAGAAGGTCAGACCACTTTTCCGACATTTCTTCAAATTCCGGCCAACTCCGGCAAAAGTAGGAGGGAGACCAACTGGGCTTTGTTCGCCTTGCCATGCTCTACAAACTCACCAAGTTTCACATCTCGATTCAAACCGAGGAAGACGAATTTCGGATTTGAGCGATTTTGGGCTATTTCGGCCTCTTTCTTCTTGAGCAATAATGTGAGAACAGCGTACGAGTATATGGCAGAGAACCACTTTTTGTTGAACCAGACACCACTTCCACATGTACACACTAAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

37.59

Weight (kDa)

10.67

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 141
AccB1I GGYRCC 1 cut(s) 532
AccII CGCG 1 cut(s) 112
AciI CCGC 3 cut(s) 90, 125, 133
AclWI GGATC 1 cut(s) 442
AcoI YGGCCR 5 cut(s) 38, 224, 627, 637, 774
AcsI RAATTY 4 cut(s) 511, 644, 768, 880
AcvI CACGTG 1 cut(s) 235
AcyI GRCGYC 2 cut(s) 533, 608
AfaI GTAC 3 cut(s) 230, 950, 1005
AfiI CCNNNNNNNGG 2 cut(s) 188, 419
AflIII ACRYGT 1 cut(s) 1000
AgsI TTSAA 6 cut(s) 155, 277, 670, 767, 865, 982
AluBI AGCT 7 cut(s) 47, 222, 358, 454, 568, 600, 677
AluI AGCT 7 cut(s) 47, 222, 358, 454, 568, 600, 677
Alw26I GTCTC 2 cut(s) 103, 794
AlwI GGATC 1 cut(s) 442
Ama87I CYCGRG 2 cut(s) 48, 346
AoxI GGCC 8 cut(s) 38, 84, 122, 224, 627, 637, 774, 912
ApeKI GCWGC 5 cut(s) 114, 562, 565, 568, 591
ApoI RAATTY 4 cut(s) 511, 644, 768, 880
AspLEI GCGC 4 cut(s) 114, 119, 142, 535
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 3 cut(s) 28, 703, 834
AvaI CYCGRG 2 cut(s) 48, 346
BalI TGGCCA 1 cut(s) 639
BanI GGYRCC 1 cut(s) 532
BbrPI CACGTG 1 cut(s) 235
BbsI GAAGAC 1 cut(s) 881
BbvI GCAGC 5 cut(s) 126, 549, 555, 577, 578
BccI CCATC 2 cut(s) 370, 556
BceAI ACGGC 3 cut(s) 77, 211, 621
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 2 cut(s) 103, 794
BfaI CTAG 2 cut(s) 324, 392
BfmI CTRYAG 1 cut(s) 563
BfoI RGCGCY 1 cut(s) 536
BisI GCNGC 6 cut(s) 115, 125, 563, 566, 569, 592
BlsI GCNGC 6 cut(s) 116, 126, 564, 567, 570, 593
Bme1390I CCNGG 1 cut(s) 182
BmeT110I CYCGRG 2 cut(s) 48, 346
BmiI GGNNCC 1 cut(s) 534
BmrFI CCNGG 1 cut(s) 182
BmrI ACTGGG 1 cut(s) 817
BmsI GCATC 2 cut(s) 408, 708
BmuI ACTGGG 1 cut(s) 817
BpiI GAAGAC 1 cut(s) 881
Bpu10I CCTNAGC 1 cut(s) 596
BpuEI CTTGAG 1 cut(s) 946
BpuMI CCSGG 1 cut(s) 182
BsaAI YACGTR 1 cut(s) 235
BsaBI GATNNNNATC 1 cut(s) 654
BsaHI GRCGYC 2 cut(s) 533, 608
BsaI GGTCTC 1 cut(s) 794
BsaJI CCNNGG 2 cut(s) 11, 869
BsaWI WCCGGW 2 cut(s) 101, 469
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 419
Bse118I RCCGGY 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 812
Bse8I GATNNNNATC 1 cut(s) 654
BseDI CCNNGG 2 cut(s) 11, 869
BseGI GGATG 4 cut(s) 362, 399, 622, 699
BseJI GATNNNNATC 1 cut(s) 654
BseLI CCNNNNNNNGG 2 cut(s) 188, 419
BseNI ACTGG 1 cut(s) 812
BseXI GCAGC 5 cut(s) 126, 549, 555, 577, 578
Bsh1236I CGCG 1 cut(s) 112
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 8 cut(s) 40, 86, 124, 226, 629, 639, 776, 914
BshNI GGYRCC 1 cut(s) 532
BsiEI CGRYCG 1 cut(s) 148
BsiHKCI CYCGRG 2 cut(s) 48, 346
BsiSI CCGG 7 cut(s) 41, 102, 182, 470, 626, 773, 783
BsiWI CGTACG 1 cut(s) 948
BslI CCNNNNNNNGG 2 cut(s) 188, 419
BsmAI GTCTC 2 cut(s) 103, 794
BsmBI CGTCTC 1 cut(s) 103
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 8 cut(s) 40, 86, 124, 226, 629, 639, 776, 914
Bso31I GGTCTC 1 cut(s) 794
BsoBI CYCGRG 2 cut(s) 48, 346
Bsp1407I TGTACA 1 cut(s) 1003
Bsp143I GATC 4 cut(s) 145, 320, 342, 447
BspACI CCGC 3 cut(s) 90, 125, 133
BspANI GGCC 8 cut(s) 40, 86, 124, 226, 629, 639, 776, 914
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 534
BspMAI CTGCAG 1 cut(s) 567
BspPI GGATC 1 cut(s) 442
BspT107I GGYRCC 1 cut(s) 532
BspTNI GGTCTC 1 cut(s) 794
BsrFI RCCGGY 1 cut(s) 40
BsrGI TGTACA 1 cut(s) 1003
BsrI ACTGG 1 cut(s) 812
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 11, 869
BssMI GATC 4 cut(s) 145, 320, 342, 447
BssNI GRCGYC 2 cut(s) 533, 608
Bst6I CTCTTC 1 cut(s) 665
BstACI GRCGYC 2 cut(s) 533, 608
BstAUI TGTACA 1 cut(s) 1003
BstBAI YACGTR 1 cut(s) 235
BstC8I GCNNGC 3 cut(s) 178, 224, 356
BstDEI CTNAG 3 cut(s) 258, 596, 1011
BstDSI CCRYGG 1 cut(s) 11
BstF5I GGATG 4 cut(s) 362, 399, 622, 699
BstFNI CGCG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 536
BstHHI GCGC 4 cut(s) 114, 119, 142, 535
BstKTI GATC 4 cut(s) 148, 323, 345, 450
BstMAI GTCTC 2 cut(s) 103, 794
BstMBI GATC 4 cut(s) 145, 320, 342, 447
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 6 cut(s) 194, 423, 568, 597, 818, 911
BstNSI RCATGY 1 cut(s) 1004
BstSCI CCNGG 1 cut(s) 180
BstSFI CTRYAG 1 cut(s) 563
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 5 cut(s) 126, 549, 555, 577, 578
BstV2I GAAGAC 1 cut(s) 881
BsuRI GGCC 8 cut(s) 40, 86, 124, 226, 629, 639, 776, 914
BtgI CCRYGG 1 cut(s) 11
BtsCI GGATG 4 cut(s) 362, 399, 622, 699
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 3 cut(s) 178, 224, 356
CfoI GCGC 4 cut(s) 114, 119, 142, 535
Cfr10I RCCGGY 1 cut(s) 40
CseI GACGC 1 cut(s) 597
Csp6I GTAC 3 cut(s) 229, 949, 1004
CviAII CATG 4 cut(s) 214, 641, 828, 1001
CviQI GTAC 3 cut(s) 229, 949, 1004
DdeI CTNAG 3 cut(s) 258, 596, 1011
DinI GGCGCC 1 cut(s) 534
DpnI GATC 4 cut(s) 147, 322, 344, 449
DpnII GATC 4 cut(s) 145, 320, 342, 447
EaeI YGGCCR 5 cut(s) 38, 224, 627, 637, 774
Eam1104I CTCTTC 1 cut(s) 665
EarI CTCTTC 1 cut(s) 665
EciI GGCGGA 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 794
Eco32I GATATC 1 cut(s) 652
Eco72I CACGTG 1 cut(s) 235
Eco88I CYCGRG 2 cut(s) 48, 346
EcoRV GATATC 1 cut(s) 652
EcoT22I ATGCAT 1 cut(s) 401
EgeI GGCGCC 1 cut(s) 534
EheI GGCGCC 1 cut(s) 534
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 4 cut(s) 217, 644, 831, 1004
FatI CATG 4 cut(s) 213, 640, 827, 1000
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 6 cut(s) 115, 125, 563, 566, 569, 592
FokI GGATG 4 cut(s) 349, 386, 609, 686
Fsp4HI GCNGC 6 cut(s) 115, 125, 563, 566, 569, 592
FspBI CTAG 2 cut(s) 324, 392
FspI TGCGCA 1 cut(s) 141
GlaI GCGC 4 cut(s) 113, 118, 141, 534
GluI GCNGC 6 cut(s) 115, 125, 563, 566, 569, 592
HaeII RGCGCY 1 cut(s) 536
HaeIII GGCC 8 cut(s) 40, 86, 124, 226, 629, 639, 776, 914
HapII CCGG 7 cut(s) 41, 102, 182, 470, 626, 773, 783
HgaI GACGC 1 cut(s) 597
HhaI GCGC 4 cut(s) 114, 119, 142, 535
Hin1I GRCGYC 2 cut(s) 533, 608
Hin1II CATG 4 cut(s) 217, 644, 831, 1004
Hin6I GCGC 4 cut(s) 112, 117, 140, 533
HinP1I GCGC 4 cut(s) 112, 117, 140, 533
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
HinfI GANTC 3 cut(s) 381, 725, 861
HpaII CCGG 7 cut(s) 41, 102, 182, 470, 626, 773, 783
HphI GGTGA 3 cut(s) 28, 703, 834
Hpy166II GTNNAC 2 cut(s) 339, 1006
Hpy188I TCNGA 4 cut(s) 404, 744, 756, 887
Hpy188III TCNNGA 6 cut(s) 152, 324, 552, 667, 858, 925
Hpy8I GTNNAC 2 cut(s) 339, 1006
Hpy99I CGWCG 3 cut(s) 98, 381, 613
HpyAV CCTTC 3 cut(s) 22, 149, 731
HpyCH4IV ACGT 2 cut(s) 234, 245
HpyCH4V TGCA 4 cut(s) 354, 399, 565, 699
HpyF10VI GCNNNNNNNGC 6 cut(s) 194, 423, 568, 597, 818, 911
HpyF3I CTNAG 3 cut(s) 258, 596, 1011
HpySE526I ACGT 2 cut(s) 234, 245
Hsp92I GRCGYC 2 cut(s) 533, 608
Hsp92II CATG 4 cut(s) 217, 644, 831, 1004
HspAI GCGC 4 cut(s) 112, 117, 140, 533
KasI GGCGCC 1 cut(s) 532
Kzo9I GATC 4 cut(s) 145, 320, 342, 447
LmnI GCTCC 1 cut(s) 194
Lsp1109I GCAGC 5 cut(s) 126, 549, 555, 577, 578
LweI GCATC 2 cut(s) 408, 708
MaeI CTAG 2 cut(s) 324, 392
MaeII ACGT 2 cut(s) 234, 245
MaeIII GTNAC 1 cut(s) 241
MalI GATC 4 cut(s) 147, 322, 344, 449
MboI GATC 4 cut(s) 145, 320, 342, 447
MboII GAAGA 5 cut(s) 490, 652, 755, 886, 913
MlsI TGGCCA 1 cut(s) 639
MluCI AATT 4 cut(s) 511, 644, 768, 880
MluNI TGGCCA 1 cut(s) 639
Mly113I GGCGCC 1 cut(s) 533
MlyI GAGTC 1 cut(s) 375
MmeI TCCRAC 3 cut(s) 461, 568, 779
MnlI CCTC 9 cut(s) 97, 138, 158, 198, 412, 583, 789, 864, 925
Mox20I TGGCCA 1 cut(s) 639
Mph1103I ATGCAT 1 cut(s) 401
MscI TGGCCA 1 cut(s) 639
MslI CAYNNNNRTG 1 cut(s) 556
Msp20I TGGCCA 1 cut(s) 639
MspA1I CMGCKG 1 cut(s) 568
MspI CCGG 7 cut(s) 41, 102, 182, 470, 626, 773, 783
MspR9I CCNGG 1 cut(s) 182
MteI GCGCNGCGC 1 cut(s) 115
Mva1269I GAATGC 1 cut(s) 333
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 6 cut(s) 194, 423, 568, 597, 818, 911
NarI GGCGCC 1 cut(s) 533
NciI CCSGG 1 cut(s) 182
NdeII GATC 4 cut(s) 145, 320, 342, 447
NlaIII CATG 4 cut(s) 217, 644, 831, 1004
NlaIV GGNNCC 1 cut(s) 534
NmeAIII GCCGAG 1 cut(s) 438
NsbI TGCGCA 1 cut(s) 141
NsiI ATGCAT 1 cut(s) 401
NspI RCATGY 1 cut(s) 1004
PaeR7I CTCGAG 1 cut(s) 48
PciI ACATGT 1 cut(s) 1000
PctI GAATGC 1 cut(s) 333
PfeI GAWTC 2 cut(s) 725, 861
Pfl23II CGTACG 1 cut(s) 948
PkrI GCNGC 6 cut(s) 116, 126, 564, 567, 570, 593
Ple19I CGATCG 1 cut(s) 148
PleI GAGTC 1 cut(s) 375
PluTI GGCGCC 1 cut(s) 536
PmaCI CACGTG 1 cut(s) 235
PmlI CACGTG 1 cut(s) 235
PpsI GAGTC 1 cut(s) 375
Ppu21I YACGTR 1 cut(s) 235
PscI ACATGT 1 cut(s) 1000
PspCI CACGTG 1 cut(s) 235
PspLI CGTACG 1 cut(s) 948
PspN4I GGNNCC 1 cut(s) 534
PspXI VCTCGAGB 1 cut(s) 48
PstI CTGCAG 1 cut(s) 567
PvuI CGATCG 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 568
RsaI GTAC 3 cut(s) 230, 950, 1005
RsaNI GTAC 3 cut(s) 229, 949, 1004
RseI CAYNNNNRTG 1 cut(s) 556
SatI GCNGC 6 cut(s) 115, 125, 563, 566, 569, 592
Sau3AI GATC 4 cut(s) 145, 320, 342, 447
SchI GAGTC 1 cut(s) 375
ScrFI CCNGG 1 cut(s) 182
SfaNI GCATC 2 cut(s) 408, 708
SfcI CTRYAG 1 cut(s) 563
SfoI GGCGCC 1 cut(s) 534
Sfr274I CTCGAG 1 cut(s) 48
SlaI CTCGAG 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 556
SmlI CTYRAG 2 cut(s) 48, 925
SmoI CTYRAG 2 cut(s) 48, 925
Sse9I AATT 4 cut(s) 511, 644, 768, 880
SsiI CCGC 3 cut(s) 90, 125, 133
SspDI GGCGCC 1 cut(s) 532
SspMI CTAG 2 cut(s) 324, 392
StyD4I CCNGG 1 cut(s) 180
TaiI ACGT 2 cut(s) 237, 248
TaqI TCGA 3 cut(s) 49, 728, 859
TasI AATT 4 cut(s) 511, 644, 768, 880
TatI WGTACW 1 cut(s) 1003
TauI GCSGC 1 cut(s) 127
TfiI GAWTC 2 cut(s) 725, 861
TscAI CASTG 1 cut(s) 142
TseI GCWGC 5 cut(s) 114, 562, 565, 568, 591
TspDTI ATGAA 3 cut(s) 611, 657, 675
TspGWI ACGGA 1 cut(s) 597
TspRI CASTG 1 cut(s) 142
XapI RAATTY 4 cut(s) 511, 644, 768, 880
XbaI TCTAGA 1 cut(s) 323
XceI RCATGY 1 cut(s) 1004
XcmI CCANNNNNNNNNTGG 1 cut(s) 555
XhoI CTCGAG 1 cut(s) 48
XspI CTAG 2 cut(s) 324, 392
Zsp2I ATGCAT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.