Rh7DG081600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010620
Physical Location & Seq
Forward (+)
6542904 .. 6544226
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG081600.1

Sequence Viewer

Length: 324 bp
ATGGTTGCTTGGCGGTGGCTGGGTTCTCGTTTTCATGGAAGTGACGAACCCAGTGGGGTTACGATTCTTCTTAGAGTTCGATCTCAGACGCCGGCCAGGTTCTTGTGTGGTTGGGTTTGTGGTGTGTCGGTGCTGTGGCGTTGGGATGCGTTGCGGCGGCCGGGCGGTGCAAGGTGGAGGGTCAAACTTTATCCTCACCTGCACTTCATGGAAAGTCTTCTGCATAACATTATGAATATTGTGTTGATCTTCAATTTAAAGTATGCTTTCATTATTTTCTTCTTTTACAATGATCAGTTGGCATCCTCCGGATTCGTCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.61

Weight (kDa)

10.27

Isoelectric Point (pI)

70.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 207
Acc36I ACCTGC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 318
AccIII TCCGGA 1 cut(s) 308
AciI CCGC 4 cut(s) 13, 154, 157, 165
AcoI YGGCCR 2 cut(s) 93, 158
AcyI GRCGYC 1 cut(s) 89
AgsI TTSAA 1 cut(s) 253
AjnI CCWGG 1 cut(s) 95
Aor13HI TCCGGA 1 cut(s) 308
AoxI GGCC 2 cut(s) 93, 158
Asp700I GAANNNNTTC 1 cut(s) 216
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 1 cut(s) 292
BcnI CCSGG 1 cut(s) 162
BfaI CTAG 1 cut(s) 322
BfuAI ACCTGC 1 cut(s) 207
BisI GCNGC 2 cut(s) 155, 158
BlsI GCNGC 2 cut(s) 156, 159
Bme1390I CCNGG 2 cut(s) 97, 162
BmrFI CCNGG 2 cut(s) 97, 162
BmrI ACTGGG 1 cut(s) 45
BmsI GCATC 2 cut(s) 136, 311
BmuI ACTGGG 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 308
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 51
BseAI TCCGGA 1 cut(s) 308
BseBI CCWGG 1 cut(s) 97
BseGI GGATG 2 cut(s) 151, 302
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 51
BseX3I CGGCCG 1 cut(s) 158
BseYI CCCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 185
Bsh1285I CGRYCG 1 cut(s) 161
BshFI GGCC 2 cut(s) 95, 160
BsiEI CGRYCG 1 cut(s) 161
BsiSI CCGG 3 cut(s) 92, 161, 309
BsnI GGCC 2 cut(s) 95, 160
Bsp13I TCCGGA 1 cut(s) 308
Bsp143I GATC 3 cut(s) 80, 246, 292
BspACI CCGC 4 cut(s) 13, 154, 157, 165
BspANI GGCC 2 cut(s) 95, 160
BspCNI CTCAG 1 cut(s) 97
BspEI TCCGGA 1 cut(s) 308
BspMI ACCTGC 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 1 cut(s) 51
BssAI RCCGGY 1 cut(s) 91
BssMI GATC 3 cut(s) 80, 246, 292
BssNI GRCGYC 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 71, 84
BstF5I GGATG 2 cut(s) 151, 302
BstKTI GATC 3 cut(s) 83, 249, 295
BstMBI GATC 3 cut(s) 80, 246, 292
BstMCI CGRYCG 1 cut(s) 161
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 2 cut(s) 95, 160
BstV2I GAAGAC 1 cut(s) 209
BstZI CGGCCG 1 cut(s) 158
BsuRI GGCC 2 cut(s) 95, 160
BtsCI GGATG 2 cut(s) 151, 302
BtsIMutI CAGTG 1 cut(s) 58
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 91
CseI GACGC 1 cut(s) 97
CviAII CATG 2 cut(s) 35, 208
CviJI RGCY 3 cut(s) 19, 95, 160
CviKI_1 RGCY 3 cut(s) 19, 95, 160
DdeI CTNAG 2 cut(s) 71, 84
DpnI GATC 3 cut(s) 82, 248, 294
DpnII GATC 3 cut(s) 80, 246, 292
DraI TTTAAA 1 cut(s) 258
EaeI YGGCCR 2 cut(s) 93, 158
EagI CGGCCG 1 cut(s) 158
EclXI CGGCCG 1 cut(s) 158
Eco52I CGGCCG 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 95
FaeI CATG 2 cut(s) 38, 211
FaiI YATR 5 cut(s) 36, 209, 225, 233, 264
FatI CATG 2 cut(s) 34, 207
FbaI TGATCA 1 cut(s) 292
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 2 cut(s) 155, 158
FokI GGATG 2 cut(s) 158, 289
Fsp4HI GCNGC 2 cut(s) 155, 158
FspBI CTAG 1 cut(s) 322
GluI GCNGC 2 cut(s) 155, 158
GsaI CCCAGC 1 cut(s) 23
HaeIII GGCC 2 cut(s) 95, 160
HapII CCGG 3 cut(s) 92, 161, 309
HgaI GACGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 2 cut(s) 38, 211
HinfI GANTC 2 cut(s) 64, 312
HpaII CCGG 3 cut(s) 92, 161, 309
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 309
Hpy8I GTNNAC 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 170, 202, 223
HpyF3I CTNAG 2 cut(s) 71, 84
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 2 cut(s) 38, 211
Kpn2I TCCGGA 1 cut(s) 308
KroI GCCGGC 1 cut(s) 91
KroNI GCCGGC 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 3 cut(s) 80, 246, 292
LpnPI CCDG 7 cut(s) 5, 64, 82, 105, 109, 174, 212
LweI GCATC 2 cut(s) 136, 311
MaeI CTAG 1 cut(s) 322
MaeIII GTNAC 2 cut(s) 41, 58
MalI GATC 3 cut(s) 82, 248, 294
MboI GATC 3 cut(s) 80, 246, 292
MboII GAAGA 4 cut(s) 59, 209, 241, 271
MluCI AATT 1 cut(s) 253
MnlI CCTC 3 cut(s) 171, 204, 316
MroI TCCGGA 1 cut(s) 308
MroNI GCCGGC 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 216
MseI TTAA 1 cut(s) 257
MslI CAYNNNNRTG 1 cut(s) 39
MspI CCGG 3 cut(s) 92, 161, 309
MspR9I CCNGG 2 cut(s) 97, 162
MvaI CCWGG 1 cut(s) 97
NaeI GCCGGC 1 cut(s) 93
NciI CCSGG 1 cut(s) 162
NdeII GATC 3 cut(s) 80, 246, 292
NgoMIV GCCGGC 1 cut(s) 91
NlaIII CATG 2 cut(s) 38, 211
NmuCI GTSAC 1 cut(s) 41
PaqCI CACCTGC 1 cut(s) 207
PdiI GCCGGC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 2 cut(s) 64, 312
PkrI GCNGC 2 cut(s) 156, 159
Psp6I CCWGG 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 39
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 2 cut(s) 155, 158
Sau3AI GATC 3 cut(s) 80, 246, 292
ScrFI CCNGG 2 cut(s) 97, 162
SetI ASST 3 cut(s) 101, 176, 201
SfaNI GCATC 2 cut(s) 136, 311
SmiMI CAYNNNNRTG 1 cut(s) 39
Sse9I AATT 1 cut(s) 253
SsiI CCGC 4 cut(s) 13, 154, 157, 165
SspI AATATT 1 cut(s) 238
SspMI CTAG 1 cut(s) 322
StyD4I CCNGG 2 cut(s) 95, 160
TaqI TCGA 1 cut(s) 79
TasI AATT 1 cut(s) 253
TauI GCSGC 2 cut(s) 157, 160
TfiI GAWTC 2 cut(s) 64, 312
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 4 cut(s) 23, 196, 248, 259
TspRI CASTG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 318
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.