Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010620

Physical Location & Seq

Genomic Coordinates Reverse (-)

22221395 .. 22221865

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG237300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGGATAGTGGCTGCATCTCGGAAGGGGAAGAGCGCTCTGGATCTCTTCTTCTCCAATCGTGGGTGAGACCTGACATGGAGCAGCGGCAGAGGCTTCGAGCGTCACGGCCTGTTCTGGGTGCTTGGCGGAGGCTGGGTCTTCGATCTCGTGGCAGAGATGAGCCCATAGTGGGTCTGCGTCTTTCTGAGATCTGGGTTCTGACGTCGGCCAGGTTTTGGGATGGTCAGCTTTGTGGGGTGGCGGTGTTGTGGCGTTGGGATGCGTTGCGGTGGCGGTCCAGTGCAAGGCGATGGGACGGTGGAGCTCGCTGGCAGCTTGCTAGGTGGACGGTGGCGCTAGTTGTTTGTGGTGAGCGGTGGGTGGGCCGGGCCTTGGTGTCTAGGTCATGCCACTGGTTGGGCCGGGCCTTTGTGTCAGGGCCATGCTGCTTGGGCTTTTCTTTGTTGTTGTTGTCTTCAGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.86

Weight (kDa)

11.16

Isoelectric Point (pI)

82.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010620)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0477771 RchiOBHm_Chr3g0492151 RchiOBHm_Chr4g0410721 RchiOBHm_Chr6g0246591
rosa_laevigata	RLG00000002711
rosa_multiflora	Rmu_ssc0000134.1_g000010
rosa_roxburghii	Rroxscaffold_3G00221140 Rroxscaffold_3G00244930 Rroxscaffold_4G00301550 Rroxscaffold_4G00309800 Rroxscaffold_4G00330610 Rroxscaffold_5G00348660 Rroxscaffold_6G00402690
rosa_rugosa	Rorug04G0074400 Rorug07G0148500
rosa_samantha	Rh7AG285000 Rh7CG237300 Rh7CG304200 Rh7DG081600 Rh7DG288600
rosa_wichuraiana	Rw7G024330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	209
AccB7I	CCANNNNNTGG	2 cut(s)	219, 400
AccBSI	CCGCTC	1 cut(s)	358
AciI	CCGC	6 cut(s)	88, 130, 245, 271, 277, 358
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	210
AcuI	CTGAAG	1 cut(s)	444
AcyI	GRCGYC	1 cut(s)	206
AfeI	AGCGCT	1 cut(s)	38
AfiI	CCNNNNNNNGG	7 cut(s)	64, 119, 173, 219, 288, 376, 400
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	3 cut(s)	232, 308, 319
AluI	AGCT	3 cut(s)	232, 308, 319
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	52
Aor51HI	AGCGCT	1 cut(s)	38
AoxI	GGCC	7 cut(s)	110, 210, 367, 372, 403, 408, 422
ApeKI	GCWGC	4 cut(s)	15, 85, 316, 429
AspLEI	GCGC	2 cut(s)	39, 340
AspS9I	GGNCC	6 cut(s)	279, 367, 372, 403, 408, 422
AsuC2I	CCSGG	2 cut(s)	371, 407
AsuHPI	GGTGA	2 cut(s)	79, 365
AvaII	GGWCC	1 cut(s)	279
BanII	GRGCYC	2 cut(s)	168, 310
BauI	CACGAG	1 cut(s)	150
BbsI	GAAGAC	2 cut(s)	134, 450
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	4 cut(s)	2, 97, 328, 416
BccI	CCATC	2 cut(s)	218, 288
BceAI	ACGGC	1 cut(s)	125
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	1 cut(s)	214
BcnI	CCSGG	2 cut(s)	371, 407
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	3 cut(s)	324, 341, 384
BfoI	RGCGCY	2 cut(s)	40, 341
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	5 cut(s)	16, 86, 89, 317, 430
BlsI	GCNGC	5 cut(s)	17, 87, 90, 318, 431
Bme1390I	CCNGG	3 cut(s)	214, 371, 407
Bme18I	GGWCC	1 cut(s)	279
BmgT120I	GGNCC	6 cut(s)	279, 367, 372, 403, 408, 422
BmrFI	CCNGG	3 cut(s)	214, 371, 407
BmsI	GCATC	2 cut(s)	27, 253
BpiI	GAAGAC	2 cut(s)	134, 450
BpuMI	CCSGG	2 cut(s)	371, 407
BsaHI	GRCGYC	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	375
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	7 cut(s)	64, 119, 173, 219, 288, 376, 400
Bse1I	ACTGG	2 cut(s)	282, 401
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	2 cut(s)	229, 268
BseLI	CCNNNNNNNGG	7 cut(s)	64, 119, 173, 219, 288, 376, 400
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	282, 401
BseXI	GCAGC	4 cut(s)	2, 97, 328, 416
BseYI	CCCAGC	1 cut(s)	136
BshFI	GGCC	7 cut(s)	112, 212, 369, 374, 405, 410, 424
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	2 cut(s)	370, 406
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	7 cut(s)	64, 119, 173, 219, 288, 376, 400
BsmAI	GTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	7 cut(s)	112, 212, 369, 374, 405, 410, 424
Bso31I	GGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	2 cut(s)	168, 310
Bsp143I	GATC	3 cut(s)	44, 146, 192
BspACI	CCGC	6 cut(s)	88, 130, 245, 271, 277, 358
BspANI	GGCC	7 cut(s)	112, 212, 369, 374, 405, 410, 424
BspCNI	CTCAG	1 cut(s)	181
BspPI	GGATC	1 cut(s)	52
BspQI	GCTCTTC	1 cut(s)	27
BspTNI	GGTCTC	1 cut(s)	64
BsrBI	CCGCTC	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	282, 401
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	3 cut(s)	44, 146, 192
BssNI	GRCGYC	1 cut(s)	206
BssSI	CACGAG	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	2 cut(s)	302, 334
Bst6I	CTCTTC	2 cut(s)	27, 54
BstACI	GRCGYC	1 cut(s)	206
BstC8I	GCNNGC	3 cut(s)	310, 314, 321
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	229, 268
BstH2I	RGCGCY	2 cut(s)	40, 341
BstHHI	GCGC	2 cut(s)	39, 340
BstKTI	GATC	3 cut(s)	47, 149, 195
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	3 cut(s)	44, 146, 192
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 435
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	3 cut(s)	212, 369, 405
BstV1I	GCAGC	4 cut(s)	2, 97, 328, 416
BstV2I	GAAGAC	2 cut(s)	134, 450
BstX2I	RGATCY	2 cut(s)	44, 192
BstYI	RGATCY	2 cut(s)	44, 192
BsuRI	GGCC	7 cut(s)	112, 212, 369, 374, 405, 410, 424
BtgZI	GCGATG	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	229, 268
BtsIMutI	CAGTG	3 cut(s)	289, 394, 468
Cac8I	GCNNGC	3 cut(s)	310, 314, 321
CfoI	GCGC	2 cut(s)	39, 340
Cfr13I	GGNCC	6 cut(s)	279, 367, 372, 403, 408, 422
CseI	GACGC	2 cut(s)	93, 170
CviAII	CATG	3 cut(s)	79, 390, 426
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	3 cut(s)	46, 148, 194
DpnII	GATC	3 cut(s)	44, 146, 192
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	27, 54
EarI	CTCTTC	2 cut(s)	27, 54
EciI	GGCGGA	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	375
Eco24I	GRGCYC	2 cut(s)	168, 310
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	279
Eco47III	AGCGCT	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	444
EcoICRI	GAGCTC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	2 cut(s)	168, 310
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	3 cut(s)	82, 393, 429
FaiI	YATR	4 cut(s)	80, 170, 391, 427
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	3 cut(s)	78, 389, 425
Fnu4HI	GCNGC	5 cut(s)	16, 86, 89, 317, 430
FokI	GGATG	2 cut(s)	236, 275
FriOI	GRGCYC	2 cut(s)	168, 310
Fsp4HI	GCNGC	5 cut(s)	16, 86, 89, 317, 430
FspBI	CTAG	3 cut(s)	324, 341, 384
GlaI	GCGC	2 cut(s)	38, 339
GluI	GCNGC	5 cut(s)	16, 86, 89, 317, 430
GsaI	CCCAGC	1 cut(s)	140
HaeII	RGCGCY	2 cut(s)	40, 341
HaeIII	GGCC	7 cut(s)	112, 212, 369, 374, 405, 410, 424
HapII	CCGG	2 cut(s)	370, 406
HgaI	GACGC	2 cut(s)	93, 170
HhaI	GCGC	2 cut(s)	39, 340
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	3 cut(s)	82, 393, 429
Hin6I	GCGC	2 cut(s)	37, 338
HinP1I	GCGC	2 cut(s)	37, 338
HpaII	CCGG	2 cut(s)	370, 406
HphI	GGTGA	2 cut(s)	79, 365
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	3 cut(s)	25, 190, 204
Hpy188III	TCNNGA	1 cut(s)	42
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	2 cut(s)	302, 334
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	2 cut(s)	18, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 435
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	3 cut(s)	82, 393, 429
HspAI	GCGC	2 cut(s)	37, 338
Kzo9I	GATC	3 cut(s)	44, 146, 192
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	82, 305
Lsp1109I	GCAGC	4 cut(s)	2, 97, 328, 416
LweI	GCATC	2 cut(s)	27, 253
MaeI	CTAG	3 cut(s)	324, 341, 384
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	3 cut(s)	46, 148, 194
MbiI	CCGCTC	1 cut(s)	358
MboI	GATC	3 cut(s)	44, 146, 192
MboII	GAAGA	5 cut(s)	41, 44, 44, 134, 450
MflI	RGATCY	2 cut(s)	44, 192
MhlI	GDGCHC	2 cut(s)	168, 310
MnlI	CCTC	2 cut(s)	87, 126
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	2 cut(s)	370, 406
MspR9I	CCNGG	3 cut(s)	214, 371, 407
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	94, 435
NciI	CCSGG	2 cut(s)	371, 407
NdeII	GATC	3 cut(s)	44, 146, 192
NlaIII	CATG	3 cut(s)	82, 393, 429
NmuCI	GTSAC	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	27
PflMI	CCANNNNNTGG	2 cut(s)	219, 400
PkrI	GCNGC	5 cut(s)	17, 87, 90, 318, 431
Psp124BI	GAGCTC	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	212
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	212
PspPI	GGNCC	6 cut(s)	279, 367, 372, 403, 408, 422
PsuI	RGATCY	2 cut(s)	44, 192
SacI	GAGCTC	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	27
SatI	GCNGC	5 cut(s)	16, 86, 89, 317, 430
Sau3AI	GATC	3 cut(s)	44, 146, 192
Sau96I	GGNCC	6 cut(s)	279, 367, 372, 403, 408, 422
ScrFI	CCNGG	3 cut(s)	214, 371, 407
SduI	GDGCHC	2 cut(s)	168, 310
SetI	ASST	8 cut(s)	76, 209, 218, 234, 310, 321, 329, 389
SfaNI	GCATC	2 cut(s)	27, 253
SinI	GGWCC	1 cut(s)	279
SsiI	CCGC	6 cut(s)	88, 130, 245, 271, 277, 358
SspMI	CTAG	3 cut(s)	324, 341, 384
SstI	GAGCTC	1 cut(s)	310
StyD4I	CCNGG	3 cut(s)	212, 369, 405
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	302, 334
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	2 cut(s)	100, 145
TauI	GCSGC	1 cut(s)	91
TscAI	CASTG	3 cut(s)	289, 401, 468
TseFI	GTSAC	1 cut(s)	105
TseI	GCWGC	4 cut(s)	15, 85, 316, 429
Tsp45I	GTSAC	1 cut(s)	105
TspRI	CASTG	3 cut(s)	289, 401, 468
Van91I	CCANNNNNTGG	2 cut(s)	219, 400
VpaK11BI	GGWCC	1 cut(s)	279
XspI	CTAG	3 cut(s)	324, 341, 384
ZraI	GACGTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.