RchiOBHm_Chr6g0246591

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010620
Physical Location & Seq
Forward (+)
2249586 .. 2250174
589 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22104

Sequence Viewer

Length: 357 bp
ATGCTTTTTAGAGTTATGGTAGTCGTCGTGGTTTCCGGCAATCGGATTGATTTGGGTTGCTGGCTCGTCGTCAGGATCCAGTCCTACCTGGTCTTTGTGCTAGGTTTTCAATATCAGCCTGTGTTGAGGAGAAAGGGTGATTCTGGGATAGCCCGCCCAATAGGGTTCTATTGGTTAGTACCTATCCTAGTTAGTGCTACTTATTTTGGTCCGATTGGCGCGAGCAGCGGCTCAATTCGATTGTGGTTGTGGTTGTTGGATCCATTGACGCGTCCTTTTCTCTTTGTCGGAGTAAGGATATGTGATGTTAGTCTGAGTGTTAGTGTGATGTATACCCTGATGGGTGTTGTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.24

Weight (kDa)

10.02

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 332
AccII CGCG 2 cut(s) 221, 271
AciI CCGC 2 cut(s) 154, 228
AclWI GGATC 4 cut(s) 70, 83, 254, 267
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 42
AflIII ACRYGT 1 cut(s) 269
AgsI TTSAA 1 cut(s) 110
AjnI CCWGG 1 cut(s) 87
AlwI GGATC 4 cut(s) 70, 83, 254, 267
ApeKI GCWGC 1 cut(s) 225
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 149
AvaII GGWCC 1 cut(s) 209
BamHI GGATCC 2 cut(s) 75, 259
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 334
BciT130I CCWGG 1 cut(s) 89
BfaI CTAG 2 cut(s) 101, 188
BisI GCNGC 2 cut(s) 226, 229
BlsI GCNGC 2 cut(s) 227, 230
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 2 cut(s) 77, 261
BmrFI CCNGG 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 237
Bsh1236I CGCG 2 cut(s) 221, 271
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 42
Bsp143I GATC 2 cut(s) 75, 259
BspACI CCGC 2 cut(s) 154, 228
BspCNI CTCAG 1 cut(s) 306
BspFNI CGCG 2 cut(s) 221, 271
BspLI GGNNCC 2 cut(s) 77, 261
BspPI GGATC 4 cut(s) 70, 83, 254, 267
BsrI ACTGG 1 cut(s) 79
BssMI GATC 2 cut(s) 75, 259
BssNAI GTATAC 1 cut(s) 333
Bst1107I GTATAC 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 89
BstC8I GCNNGC 3 cut(s) 62, 154, 223
BstDEI CTNAG 1 cut(s) 314
BstFNI CGCG 2 cut(s) 221, 271
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 2 cut(s) 78, 262
BstMBI GATC 2 cut(s) 75, 259
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstUI CGCG 2 cut(s) 221, 271
BstV1I GCAGC 1 cut(s) 237
BstX2I RGATCY 2 cut(s) 75, 259
BstYI RGATCY 2 cut(s) 75, 259
BstZ17I GTATAC 1 cut(s) 333
Cac8I GCNNGC 3 cut(s) 62, 154, 223
CfoI GCGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 209
CseI GACGC 2 cut(s) 260, 277
CsiI ACCWGGT 1 cut(s) 87
Csp6I GTAC 1 cut(s) 179
CviJI RGCY 4 cut(s) 64, 118, 152, 231
CviKI_1 RGCY 4 cut(s) 64, 118, 152, 231
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 314
DpnI GATC 2 cut(s) 77, 261
DpnII GATC 2 cut(s) 75, 259
Eco47I GGWCC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 87
FaiI YATR 3 cut(s) 17, 301, 333
FauI CCCGC 1 cut(s) 161
FblI GTMKAC 1 cut(s) 332
Fnu4HI GCNGC 2 cut(s) 226, 229
Fsp4HI GCNGC 2 cut(s) 226, 229
FspBI CTAG 2 cut(s) 101, 188
GlaI GCGC 1 cut(s) 220
GluI GCNGC 2 cut(s) 226, 229
HapII CCGG 1 cut(s) 36
HgaI GACGC 2 cut(s) 260, 277
HhaI GCGC 1 cut(s) 221
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 4 cut(s) 45, 213, 290, 315
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 333
Hpy99I CGWCG 2 cut(s) 29, 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 1 cut(s) 314
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 2 cut(s) 75, 259
LpnPI CCDG 9 cut(s) 46, 49, 58, 74, 92, 101, 129, 132, 350
Lsp1109I GCAGC 1 cut(s) 237
MabI ACCWGGT 1 cut(s) 87
MaeI CTAG 2 cut(s) 101, 188
MalI GATC 2 cut(s) 77, 261
MboI GATC 2 cut(s) 75, 259
MflI RGATCY 2 cut(s) 75, 259
MluCI AATT 2 cut(s) 234, 351
MluI ACGCGT 1 cut(s) 269
MmeI TCCRAC 2 cut(s) 237, 268
MnlI CCTC 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MvnI CGCG 2 cut(s) 221, 271
MwoI GCNNNNNNNGC 1 cut(s) 225
NdeII GATC 2 cut(s) 75, 259
NlaIV GGNNCC 2 cut(s) 77, 261
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 227, 230
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 77, 261
PspPI GGNCC 1 cut(s) 209
PsuI RGATCY 2 cut(s) 75, 259
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SatI GCNGC 2 cut(s) 226, 229
Sau3AI GATC 2 cut(s) 75, 259
Sau96I GGNCC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 89
SetI ASST 3 cut(s) 90, 106, 184
SexAI ACCWGGT 1 cut(s) 87
SinI GGWCC 1 cut(s) 209
Sse9I AATT 2 cut(s) 234, 351
SsiI CCGC 2 cut(s) 154, 228
SspMI CTAG 2 cut(s) 101, 188
StyD4I CCNGG 1 cut(s) 87
TaqI TCGA 1 cut(s) 238
TasI AATT 2 cut(s) 234, 351
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 1 cut(s) 140
TseI GCWGC 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 332
XspI CTAG 2 cut(s) 101, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.