Rroxscaffold_5G00348660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010620
Physical Location & Seq
Reverse (-)
20997730 .. 21010886
13157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00348660.1

Sequence Viewer

Length: 312 bp
ATGGTCCAGCATGGATACATTTTAATATTTTTGAAGTGTCAAAATGCGTTTCTATTGCAGATGGTTGAACCAATGTTGAAGGCTGCTATTTTCACATCTCAATTCAACCCGAGGAAGACGAATTTCGGATTTGAACAATTCCGACCATTGAAGCTTTCGAGAGTGGCTCAAAGCGCTTCTAATGGACCTGGGTTTGTGGCCGATTCCGGAGAAACCAACGTTGACCACTTCGCTACAAGTAACCACATGCTTCTAGGTGTTGGTTCTTCATTTTCCGGCCATGATGCCTTGAAATACCACCGTAGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.56

Weight (kDa)

9.89

Isoelectric Point (pI)

24.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 206
AclI AACGTT 1 cut(s) 219
AcoI YGGCCR 2 cut(s) 198, 277
AcsI RAATTY 1 cut(s) 121
AfeI AGCGCT 1 cut(s) 175
AgsI TTSAA 7 cut(s) 34, 68, 79, 106, 134, 151, 292
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 109
Aor13HI TCCGGA 1 cut(s) 206
Aor51HI AGCGCT 1 cut(s) 175
AoxI GGCC 2 cut(s) 198, 277
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 121
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 2 cut(s) 4, 185
AvaI CYCGRG 1 cut(s) 109
AvaII GGWCC 2 cut(s) 4, 185
BbsI GAAGAC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 189
BciVI GTATCC 1 cut(s) 8
BfaI CTAG 1 cut(s) 254
BfoI RGCGCY 1 cut(s) 177
BfuI GTATCC 1 cut(s) 8
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 2 cut(s) 4, 185
BmeT110I CYCGRG 1 cut(s) 109
BmgT120I GGNCC 2 cut(s) 4, 185
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 122
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BsaJI CCNNGG 2 cut(s) 110, 188
BsaWI WCCGGW 1 cut(s) 206
BseAI TCCGGA 1 cut(s) 206
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 2 cut(s) 110, 188
BseXI GCAGC 1 cut(s) 70
BshFI GGCC 2 cut(s) 200, 279
BsiHKCI CYCGRG 1 cut(s) 109
BsiSI CCGG 2 cut(s) 207, 276
BsnI GGCC 2 cut(s) 200, 279
BsoBI CYCGRG 1 cut(s) 109
Bsp13I TCCGGA 1 cut(s) 206
BspANI GGCC 2 cut(s) 200, 279
BspEI TCCGGA 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 110, 188
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 302
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 122
BsuI GTATCC 1 cut(s) 8
BsuRI GGCC 2 cut(s) 200, 279
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 2 cut(s) 4, 185
CviAII CATG 3 cut(s) 11, 247, 281
CviJI RGCY 5 cut(s) 83, 154, 167, 200, 279
CviKI_1 RGCY 5 cut(s) 83, 154, 167, 200, 279
EaeI YGGCCR 2 cut(s) 198, 277
Eco47I GGWCC 2 cut(s) 4, 185
Eco47III AGCGCT 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 187
FaeI CATG 3 cut(s) 14, 250, 284
FaiI YATR 3 cut(s) 12, 248, 282
FatI CATG 3 cut(s) 10, 246, 280
Fnu4HI GCNGC 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 254
GlaI GCGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 2 cut(s) 200, 279
HapII CCGG 2 cut(s) 207, 276
HhaI GCGC 1 cut(s) 176
Hin1II CATG 3 cut(s) 14, 250, 284
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 1 cut(s) 203
HpaII CCGG 2 cut(s) 207, 276
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 2 cut(s) 128, 143
Hpy188III TCNNGA 2 cut(s) 159, 207
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 3 cut(s) 14, 250, 284
HspAI GCGC 1 cut(s) 174
Kpn2I TCCGGA 1 cut(s) 206
LpnPI CCDG 5 cut(s) 20, 174, 201, 220, 289
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 254
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 239
MboII GAAGA 2 cut(s) 127, 258
MluCI AATT 3 cut(s) 101, 121, 137
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 1 cut(s) 105
MroI TCCGGA 1 cut(s) 206
MseI TTAA 1 cut(s) 23
MspI CCGG 2 cut(s) 207, 276
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 173
NlaIII CATG 3 cut(s) 14, 250, 284
NspI RCATGY 1 cut(s) 250
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 85
Psp1406I AACGTT 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspPI GGNCC 2 cut(s) 4, 185
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 1 cut(s) 84
Sau96I GGNCC 2 cut(s) 4, 185
ScrFI CCNGG 1 cut(s) 189
SetI ASST 4 cut(s) 156, 190, 222, 259
SfaNI GCATC 1 cut(s) 274
SinI GGWCC 2 cut(s) 4, 185
Sse9I AATT 3 cut(s) 101, 121, 137
SspI AATATT 1 cut(s) 27
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 302
TaiI ACGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 158
TasI AATT 3 cut(s) 101, 121, 137
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 258
VpaK11BI GGWCC 2 cut(s) 4, 185
XapI RAATTY 1 cut(s) 121
XceI RCATGY 1 cut(s) 250
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.