RchiOBHm_Chr4g0410721

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0010620
Physical Location & Seq
Forward (+)
34494906 .. 34496014
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38161

Sequence Viewer

Length: 894 bp
ATGATCGGTGCAGTTTTATGCCGGAGGCTTGGCCTAGGGAGGGATGGCGGCTGGATCTCGGACAGAGAAGACCGATCGGTTTTCTTTCTTCTTGGTTCGGGGGTCAAGGTGGCTCGGCGTGGTGCGATTTACCGGCTGATTCTGGTGTCACGGCAGAGGATGGTGGCTTGGAGTTGCTTGGCGATGGCGGGGCTGAGGTTGGAGGCTTGGCGAAGGCTGGGGTGTCGATCTCATGGCAGAGGCGGGCCTGGAGGGGATCTGATCTCTCTGGGGTTTCTGCTTCTGTTGGCGTCCAGGTACTGGGGTGGCCCGCTTTGTGGTGCGACGACGTTGTGGTGGTGGGATTCACTGCGGCGGCGGGGCAGTGCAGAGGGGCGGGACGGCGGAGCGCGCGGGCACTGGACTCGACCTTGGTGGATTGCGGCGTCGGATCCTTGTGGGGAGTGGCTTTTGGGCCGAGCCTTTGGGCTAGGGTTTTTGTTTAGTCTGTTTAGTTCACTGGTTTTGCTGTTAGTCTTTAGTTTGTTAGTTGTTGGATCTGCTCGTCAGATCTCAAATAAGTCCATGCTTTTTAGAGTTATGGTAGTCGTCGTGGTTTCCGGCAATCGGATCGATTTGGGTTGCTGGCTCGTCGTCAGGATCCAGTCCTACCTGGTCTTTGTGCTAGGTTTTCATTATCAGCCTGTGTTGAGGAGAAAGGGTGATCCTGGGATAGCCCGCCCAATAGTGTTCTATTGGTTAGTACCTATTCTAGTTAGTGCTACTTATTTTGGTCCGATTGGCGTGAGCAGCGGCTCAATTCGATTGTGGTTGTTGGATCCATTGACGCGTCCTTTTCTCTTTGTCGGAGTGAGGATATGTGATGTTAGTCTGAGTGTTAGTCATTTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

32.98

Weight (kDa)

11.21

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 300
AccII CGCG 3 cut(s) 391, 393, 829
AcyI GRCGYC 2 cut(s) 290, 425
AfaI GTAC 2 cut(s) 299, 744
AfiI CCNNNNNNNGG 4 cut(s) 40, 300, 317, 606
AflIII ACRYGT 1 cut(s) 827
AjnI CCWGG 4 cut(s) 247, 293, 651, 706
AlwNI CAGNNNCTG 1 cut(s) 300
AoxI GGCC 4 cut(s) 31, 245, 307, 454
ApeKI GCWGC 1 cut(s) 789
AspA2I CCTAGG 1 cut(s) 34
AspLEI GCGC 2 cut(s) 391, 393
AspS9I GGNCC 4 cut(s) 245, 308, 454, 773
AsuHPI GGTGA 1 cut(s) 713
AvaII GGWCC 1 cut(s) 773
AvrII CCTAGG 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 399
BaeI ACNNNNGTAYC 2 cut(s) 289, 322
BamHI GGATCC 3 cut(s) 430, 639, 817
BbsI GAAGAC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 801
BccI CCATC 3 cut(s) 38, 154, 178
BceAI ACGGC 2 cut(s) 167, 397
BcgI CGANNNNNNTGC 4 cut(s) 386, 420, 592, 626
BciT130I CCWGG 4 cut(s) 249, 295, 653, 708
BfaI CTAG 4 cut(s) 35, 470, 665, 752
BglII AGATCT 1 cut(s) 549
BisI GCNGC 6 cut(s) 49, 353, 356, 423, 790, 793
BlnI CCTAGG 1 cut(s) 34
BlsI GCNGC 6 cut(s) 50, 354, 357, 424, 791, 794
Bme1390I CCNGG 4 cut(s) 249, 295, 653, 708
Bme18I GGWCC 1 cut(s) 773
BmgT120I GGNCC 4 cut(s) 245, 308, 454, 773
BmiI GGNNCC 3 cut(s) 432, 641, 819
BmrFI CCNGG 4 cut(s) 249, 295, 653, 708
BmrI ACTGGG 1 cut(s) 310
BmuI ACTGGG 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 194
Bsa29I ATCGAT 1 cut(s) 612
BsaHI GRCGYC 2 cut(s) 290, 425
BsaJI CCNNGG 3 cut(s) 34, 410, 707
BsaXI ACNNNNNCTCC 2 cut(s) 685, 715
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 300, 317, 606
Bse118I RCCGGY 1 cut(s) 132
Bse1I ACTGG 4 cut(s) 305, 404, 504, 643
BseBI CCWGG 4 cut(s) 249, 295, 653, 708
BseCI ATCGAT 1 cut(s) 612
BseDI CCNNGG 3 cut(s) 34, 410, 707
BseGI GGATG 2 cut(s) 49, 165
BseLI CCNNNNNNNGG 4 cut(s) 40, 300, 317, 606
BseMII CTCAG 2 cut(s) 185, 863
BseNI ACTGG 4 cut(s) 305, 404, 504, 643
BsePI GCGCGC 1 cut(s) 389
BseRI GAGGAG 1 cut(s) 706
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 1 cut(s) 801
BseYI CCCAGC 1 cut(s) 217
BsgI GTGCAG 2 cut(s) 30, 387
Bsh1236I CGCG 3 cut(s) 391, 393, 829
Bsh1285I CGRYCG 1 cut(s) 77
BshFI GGCC 4 cut(s) 33, 247, 309, 456
BshVI ATCGAT 1 cut(s) 612
BsiEI CGRYCG 1 cut(s) 77
BsiSI CCGG 3 cut(s) 22, 133, 600
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 4 cut(s) 40, 300, 317, 606
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 4 cut(s) 33, 247, 309, 456
Bsp1286I GDGCHC 1 cut(s) 399
BspANI GGCC 4 cut(s) 33, 247, 309, 456
BspCNI CTCAG 2 cut(s) 186, 864
BspDI ATCGAT 1 cut(s) 612
BspFNI CGCG 3 cut(s) 391, 393, 829
BspLI GGNNCC 3 cut(s) 432, 641, 819
BsrFI RCCGGY 1 cut(s) 132
BsrI ACTGG 4 cut(s) 305, 404, 504, 643
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 3 cut(s) 34, 410, 707
BssHII GCGCGC 1 cut(s) 389
BssNI GRCGYC 2 cut(s) 290, 425
BssT1I CCWWGG 2 cut(s) 34, 410
Bst2UI CCWGG 4 cut(s) 249, 295, 653, 708
BstACI GRCGYC 2 cut(s) 290, 425
BstC8I GCNNGC 6 cut(s) 245, 311, 391, 395, 626, 718
BstDEI CTNAG 2 cut(s) 194, 872
BstF5I GGATG 2 cut(s) 49, 165
BstFNI CGCG 3 cut(s) 391, 393, 829
BstHHI GCGC 2 cut(s) 391, 393
BstMCI CGRYCG 1 cut(s) 77
BstMWI GCNNNNNNNGC 2 cut(s) 390, 789
BstNI CCWGG 4 cut(s) 249, 295, 653, 708
BstSCI CCNGG 4 cut(s) 247, 293, 651, 706
BstSLI GKGCMC 1 cut(s) 399
BstUI CGCG 3 cut(s) 391, 393, 829
BstV1I GCAGC 1 cut(s) 801
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 7 cut(s) 54, 256, 430, 536, 549, 639, 817
BstYI RGATCY 7 cut(s) 54, 256, 430, 536, 549, 639, 817
Bsu15I ATCGAT 1 cut(s) 612
BsuRI GGCC 4 cut(s) 33, 247, 309, 456
BsuTUI ATCGAT 1 cut(s) 612
BtgZI GCGATG 1 cut(s) 197
BtsCI GGATG 2 cut(s) 49, 165
BtsI GCAGTG 2 cut(s) 347, 370
BtsIMutI CAGTG 4 cut(s) 347, 370, 397, 497
Cac8I GCNNGC 6 cut(s) 245, 311, 391, 395, 626, 718
CaiI CAGNNNCTG 1 cut(s) 300
CfoI GCGC 2 cut(s) 391, 393
Cfr10I RCCGGY 1 cut(s) 132
Cfr13I GGNCC 4 cut(s) 245, 308, 454, 773
ClaI ATCGAT 1 cut(s) 612
CseI GACGC 4 cut(s) 279, 414, 818, 835
CsiI ACCWGGT 1 cut(s) 651
Csp6I GTAC 2 cut(s) 298, 743
CviAII CATG 2 cut(s) 233, 565
CviQI GTAC 2 cut(s) 298, 743
DdeI CTNAG 2 cut(s) 194, 872
EciI GGCGGA 1 cut(s) 399
Eco130I CCWWGG 2 cut(s) 34, 410
Eco47I GGWCC 1 cut(s) 773
EcoRII CCWGG 4 cut(s) 247, 293, 651, 706
EcoT14I CCWWGG 2 cut(s) 34, 410
ErhI CCWWGG 2 cut(s) 34, 410
FaeI CATG 2 cut(s) 236, 568
FaiI YATR 5 cut(s) 19, 234, 566, 581, 859
FaqI GGGAC 1 cut(s) 392
FatI CATG 2 cut(s) 232, 564
FauI CCCGC 7 cut(s) 181, 236, 318, 351, 369, 386, 725
Fnu4HI GCNGC 6 cut(s) 49, 353, 356, 423, 790, 793
FokI GGATG 2 cut(s) 56, 172
Fsp4HI GCNGC 6 cut(s) 49, 353, 356, 423, 790, 793
FspBI CTAG 4 cut(s) 35, 470, 665, 752
GlaI GCGC 2 cut(s) 390, 392
GluI GCNGC 6 cut(s) 49, 353, 356, 423, 790, 793
GsaI CCCAGC 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 4 cut(s) 33, 247, 309, 456
HapII CCGG 3 cut(s) 22, 133, 600
HgaI GACGC 4 cut(s) 279, 414, 818, 835
HhaI GCGC 2 cut(s) 391, 393
Hin1I GRCGYC 2 cut(s) 290, 425
Hin1II CATG 2 cut(s) 236, 568
Hin6I GCGC 2 cut(s) 389, 391
HinP1I GCGC 2 cut(s) 389, 391
HinfI GANTC 3 cut(s) 139, 344, 403
HpaII CCGG 3 cut(s) 22, 133, 600
HphI GGTGA 1 cut(s) 713
Hpy166II GTNNAC 1 cut(s) 497
Hpy188I TCNGA 8 cut(s) 61, 261, 430, 549, 609, 777, 848, 873
Hpy188III TCNNGA 1 cut(s) 637
Hpy8I GTNNAC 1 cut(s) 497
Hpy99I CGWCG 5 cut(s) 328, 331, 430, 593, 635
HpyAV CCTTC 1 cut(s) 207
HpyCH4IV ACGT 1 cut(s) 329
HpyCH4V TGCA 2 cut(s) 11, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 390, 789
HpyF3I CTNAG 2 cut(s) 194, 872
HpySE526I ACGT 1 cut(s) 329
Hsp92I GRCGYC 2 cut(s) 290, 425
Hsp92II CATG 2 cut(s) 236, 568
HspAI GCGC 2 cut(s) 389, 391
LmnI GCTCC 1 cut(s) 386
Lsp1109I GCAGC 1 cut(s) 801
MabI ACCWGGT 1 cut(s) 651
MaeI CTAG 4 cut(s) 35, 470, 665, 752
MaeII ACGT 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 147
MboII GAAGA 2 cut(s) 80, 80
MflI RGATCY 7 cut(s) 54, 256, 430, 536, 549, 639, 817
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 1 cut(s) 798
MluI ACGCGT 1 cut(s) 827
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 5 cut(s) 180, 408, 514, 795, 826
MspA1I CMGCKG 1 cut(s) 792
MspI CCGG 3 cut(s) 22, 133, 600
MspR9I CCNGG 4 cut(s) 249, 295, 653, 708
MvaI CCWGG 4 cut(s) 249, 295, 653, 708
MvnI CGCG 3 cut(s) 391, 393, 829
MwoI GCNNNNNNNGC 2 cut(s) 390, 789
NlaIII CATG 2 cut(s) 236, 568
NlaIV GGNNCC 3 cut(s) 432, 641, 819
NmeAIII GCCGAG 2 cut(s) 94, 482
NmuCI GTSAC 1 cut(s) 147
PauI GCGCGC 1 cut(s) 389
PfeI GAWTC 2 cut(s) 139, 344
PflMI CCANNNNNTGG 1 cut(s) 300
PkrI GCNGC 6 cut(s) 50, 354, 357, 424, 791, 794
Ple19I CGATCG 1 cut(s) 77
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
Psp6I CCWGG 4 cut(s) 247, 293, 651, 706
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 4 cut(s) 247, 293, 651, 706
PspN4I GGNNCC 3 cut(s) 432, 641, 819
PspPI GGNCC 4 cut(s) 245, 308, 454, 773
PstNI CAGNNNCTG 1 cut(s) 300
PsuI RGATCY 7 cut(s) 54, 256, 430, 536, 549, 639, 817
PteI GCGCGC 1 cut(s) 389
PvuI CGATCG 1 cut(s) 77
RsaI GTAC 2 cut(s) 299, 744
RsaNI GTAC 2 cut(s) 298, 743
SatI GCNGC 6 cut(s) 49, 353, 356, 423, 790, 793
Sau96I GGNCC 4 cut(s) 245, 308, 454, 773
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 4 cut(s) 249, 295, 653, 708
SduI GDGCHC 1 cut(s) 399
SetI ASST 8 cut(s) 111, 200, 299, 332, 412, 654, 670, 748
SexAI ACCWGGT 1 cut(s) 651
SinI GGWCC 1 cut(s) 773
Sse9I AATT 1 cut(s) 798
SspMI CTAG 4 cut(s) 35, 470, 665, 752
StyD4I CCNGG 4 cut(s) 247, 293, 651, 706
StyI CCWWGG 2 cut(s) 34, 410
TaiI ACGT 1 cut(s) 332
TaqI TCGA 4 cut(s) 226, 406, 612, 802
TaqII GACCGA 1 cut(s) 87
TasI AATT 1 cut(s) 798
TauI GCSGC 5 cut(s) 51, 355, 358, 425, 795
TfiI GAWTC 2 cut(s) 139, 344
TscAI CASTG 4 cut(s) 354, 370, 404, 504
TseFI GTSAC 1 cut(s) 147
TseI GCWGC 1 cut(s) 789
Tsp45I GTSAC 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 662
TspRI CASTG 4 cut(s) 354, 370, 404, 504
Van91I CCANNNNNTGG 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 773
XmaJI CCTAGG 1 cut(s) 34
XspI CTAG 4 cut(s) 35, 470, 665, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.