Rorug07G0148500

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
11755713 .. 11755892
180 bp
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UTR
Exon/CDS
Intron
Rorug07G0148500.1

Sequence Viewer

Length: 180 bp
ATGCTTTCGATTGCAACGGGGCACCCTATGTTGGAGTCGCAAACATATGAATATTTAAGTGGCTCAAACAACAAGGTTGGATGGAGTTTGCGACGACTTCTCCACACAGAACAAGAACAGTATACGATGAATCAACAAGCGAAGATTATGATCCAATTTGTGGGAGACCACTTGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

59

Amino Acids

6.84

Weight (kDa)

6.23

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 21
AccB7I CCANNNNNTGG 1 cut(s) 160
AccI GTMKAC 1 cut(s) 122
AclWI GGATC 1 cut(s) 145
AfiI CCNNNNNNNGG 2 cut(s) 31, 160
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 24
BanI GGYRCC 1 cut(s) 21
BccI CCATC 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 23
BsaBI GATNNNNATC 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 160
Bse8I GATNNNNATC 1 cut(s) 149
BseGI GGATG 1 cut(s) 86
BseJI GATNNNNATC 1 cut(s) 149
BseLI CCNNNNNNNGG 2 cut(s) 31, 160
BseSI GKGCMC 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 31, 160
BsmAI GTCTC 1 cut(s) 159
Bso31I GGTCTC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 23
BspPI GGATC 1 cut(s) 145
BspT107I GGYRCC 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 159
BssMI GATC 1 cut(s) 150
BssNAI GTATAC 1 cut(s) 123
Bst1107I GTATAC 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 120
BstF5I GGATG 1 cut(s) 86
BstKTI GATC 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 24
BstZ17I GTATAC 1 cut(s) 123
BtsCI GGATG 1 cut(s) 86
CviJI RGCY 1 cut(s) 63
CviKI_1 RGCY 1 cut(s) 63
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 159
FaiI YATR 5 cut(s) 29, 46, 48, 123, 149
FauNDI CATATG 1 cut(s) 46
FblI GTMKAC 1 cut(s) 122
FokI GGATG 1 cut(s) 93
HinfI GANTC 2 cut(s) 35, 130
Hpy166II GTNNAC 1 cut(s) 123
Hpy8I GTNNAC 1 cut(s) 123
Hpy99I CGWCG 1 cut(s) 96
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4V TGCA 1 cut(s) 14
Kzo9I GATC 1 cut(s) 150
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 1 cut(s) 155
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 2 cut(s) 12, 58
MseI TTAA 1 cut(s) 56
NdeI CATATG 1 cut(s) 46
NdeII GATC 1 cut(s) 150
NlaIV GGNNCC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 160
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 56
Sau3AI GATC 1 cut(s) 150
SchI GAGTC 1 cut(s) 44
SduI GDGCHC 1 cut(s) 24
SetI ASST 1 cut(s) 78
SgeI CNNG 4 cut(s) 30, 85, 125, 149
Sse9I AATT 1 cut(s) 155
SspI AATATT 1 cut(s) 53
TaaI ACNGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 155
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 63, 143
Van91I CCANNNNNTGG 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.