Rroxscaffold_4G00309800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0010620
Physical Location & Seq
Forward (+)
31649766 .. 31667545
17780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00309800.1

Sequence Viewer

Length: 1113 bp
ATGTCTAGTACTCCTGGTACGTGGAAGGCCGACGTGCCACCAAGAGTCGCACCCAAACCACTTGGTTTGAGTCGCCGTCGCAAGCAAGCCACAAGTCTTCGCCGCAAAGACAACCGGAGGAACAAGGAGCAATCTTTGTTCCTATCACACAACCTTGCGGCGACAAACAAACCTTCCACCGCTGCCATCATCCACAAGGTAGGCAGAGAGCAGAAAATCCAAACCCTTTGCCCAAAATTTTCAGAACGCCGCCAAGAAATCCTAGTGGCTCGGCGTGGTGCGATTTACCGGCCGAGTCCGGTGTCACGGCGAGAGGATGGTGGCTTGGCGTTGCTTGGCGATGGCGGGCCGAGGTTGGAGGCTTGGCGAAGGCTGCGGTCTCGATCTCGTGGCGCAGGCGGCCCTAGAGGGATCCGATCTCTCCGGGGTTTCGCTTCGTCGGCGTCCGTGCACCGGAGTGGCCCGCTTTGTGGTGCGACGACGTTGTGGTGGTGGGTTTCGCCGTGGCGGCGGGGGCGTGCAGGGGCGGGACGGCGGAGCGTGCGGGCTTTGGACTCGATCTCGGTGGATTGCGGCACAACGAATCAAAGCAAAGAAGGTCAGACCACTTTTCCGGCATTTCTTCAAATCCCGGCTAACTCGGCAAAAGTAGGAGGGGAGACCAACTGGGCTTTGTTCGCCTTGCCATGCTCTACAAACTCACAAAGTTTCACATCTCGATTCAAACCGAGGAAGACGAATTTCGGATTTGAGCGATTTTGGGCGATTTCGGCCTCTTTCTTCTTGAGTCAATTAATTTACATGATTCACTACACACCTCACGGTTGGGCTAAACCCAAGTTAGACAAGAATCAAAGGGAATCTCATTGGTGCATAGGTTTTGAGAGCAGGGCGGTGGTAAAGCGTCGGGCTTCACTTTCAACCATCGGTGTTGTTGTTTGGCACTATTATTTCGAGGATAAGGATGGGGTCACTTTCTCGTTTTTGTTCTTGTGTTATTCTCGAAAGAGGCTACCGATTTTGGTGGAGATCTCGCAGCGACCGATGGGGAGGATTCGTTTTTCCGGGGCGGAGACCTTCTCGGTGCGATGGGTCTTACGTGAGGGGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

370

Amino Acids

41.79

Weight (kDa)

11.44

Isoelectric Point (pI)

64.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 406, 419
AcoI YGGCCR 1 cut(s) 290
AcsI RAATTY 2 cut(s) 236, 739
AcyI GRCGYC 1 cut(s) 443
AfaI GTAC 2 cut(s) 10, 19
AfiI CCNNNNNNNGG 2 cut(s) 453, 470
AgsI TTSAA 3 cut(s) 626, 724, 921
AjiI CACGTC 1 cut(s) 34
AjnI CCWGG 1 cut(s) 13
AleI CACNNNNGTG 1 cut(s) 456
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 3 cut(s) 384, 653, 1067
Alw44I GTGCAC 1 cut(s) 449
AlwI GGATC 2 cut(s) 406, 419
AoxI GGCC 6 cut(s) 27, 290, 347, 400, 460, 771
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 3 cut(s) 182, 373, 1036
ApoI RAATTY 2 cut(s) 236, 739
AseI ATTAAT 1 cut(s) 794
AspLEI GCGC 1 cut(s) 395
AspS9I GGNCC 3 cut(s) 347, 401, 461
AsuC2I CCSGG 3 cut(s) 425, 632, 1066
BaeGI GKGCMC 1 cut(s) 453
BamHI GGATCC 1 cut(s) 411
BauI CACGAG 1 cut(s) 387
BbsI GAAGAC 2 cut(s) 89, 740
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 3 cut(s) 169, 360, 1048
BccI CCATC 7 cut(s) 194, 311, 335, 932, 959, 1039, 1083
BceAI ACGGC 4 cut(s) 60, 323, 487, 548
BciT130I CCWGG 1 cut(s) 15
BcnI CCSGG 3 cut(s) 425, 632, 1066
BcoDI GTCTC 3 cut(s) 384, 653, 1067
BfaI CTAG 3 cut(s) 6, 263, 405
BglI GCCNNNNNGGC 1 cut(s) 508
BglII AGATCT 1 cut(s) 1029
BisI GCNGC 9 cut(s) 103, 159, 183, 250, 374, 400, 509, 574, 1037
BlsI GCNGC 9 cut(s) 104, 160, 184, 251, 375, 401, 510, 575, 1038
BmcAI AGTACT 1 cut(s) 10
Bme1390I CCNGG 4 cut(s) 15, 425, 632, 1066
BmgBI CACGTC 1 cut(s) 34
BmgT120I GGNCC 3 cut(s) 347, 401, 461
BmiI GGNNCC 1 cut(s) 413
BmrFI CCNGG 4 cut(s) 15, 425, 632, 1066
BmrI ACTGGG 1 cut(s) 676
BmuI ACTGGG 1 cut(s) 676
BpiI GAAGAC 2 cut(s) 89, 740
BplI GAGNNNNNCTC 2 cut(s) 1064, 1096
BpuEI CTTGAG 1 cut(s) 805
BpuMI CCSGG 3 cut(s) 425, 632, 1066
BsaAI YACGTR 2 cut(s) 21, 1100
BsaHI GRCGYC 1 cut(s) 443
BsaI GGTCTC 3 cut(s) 384, 653, 1067
BsaJI CCNNGG 5 cut(s) 350, 424, 503, 728, 1065
BsaWI WCCGGW 3 cut(s) 114, 298, 453
BsaXI ACNNNNNCTCC 2 cut(s) 1042, 1072
Bsc4I CCNNNNNNNGG 2 cut(s) 453, 470
Bse118I RCCGGY 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 671
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 5 cut(s) 350, 424, 503, 728, 1065
BseGI GGATG 3 cut(s) 189, 322, 970
BseLI CCNNNNNNNGG 2 cut(s) 453, 470
BseNI ACTGG 1 cut(s) 671
BseSI GKGCMC 1 cut(s) 453
BseX3I CGGCCG 1 cut(s) 290
BseXI GCAGC 3 cut(s) 169, 360, 1048
BsgI GTGCAG 1 cut(s) 540
Bsh1285I CGRYCG 2 cut(s) 293, 1043
BshFI GGCC 6 cut(s) 29, 292, 349, 402, 462, 773
BsiEI CGRYCG 2 cut(s) 293, 1043
BsiHKAI GWGCWC 1 cut(s) 453
BsiSI CCGG 8 cut(s) 115, 289, 299, 424, 454, 614, 632, 1065
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 2 cut(s) 453, 470
BsmAI GTCTC 3 cut(s) 384, 653, 1067
BsmFI GGGAC 1 cut(s) 543
BsnI GGCC 6 cut(s) 29, 292, 349, 402, 462, 773
Bso31I GGTCTC 3 cut(s) 384, 653, 1067
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 5 cut(s) 383, 411, 416, 558, 1029
BspANI GGCC 6 cut(s) 29, 292, 349, 402, 462, 773
BspLI GGNNCC 1 cut(s) 413
BspPI GGATC 2 cut(s) 406, 419
BspTNI GGTCTC 3 cut(s) 384, 653, 1067
BsrFI RCCGGY 1 cut(s) 288
BsrI ACTGG 1 cut(s) 671
BssAI RCCGGY 1 cut(s) 288
BssECI CCNNGG 5 cut(s) 350, 424, 503, 728, 1065
BssMI GATC 5 cut(s) 383, 411, 416, 558, 1029
BssNI GRCGYC 1 cut(s) 443
BssSI CACGAG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 387
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 824
BstACI GRCGYC 1 cut(s) 443
BstBAI YACGTR 2 cut(s) 21, 1100
BstC8I GCNNGC 8 cut(s) 83, 87, 347, 397, 464, 519, 542, 546
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 3 cut(s) 189, 322, 970
BstHHI GCGC 1 cut(s) 395
BstKTI GATC 5 cut(s) 386, 414, 419, 561, 1032
BstMAI GTCTC 3 cut(s) 384, 653, 1067
BstMBI GATC 5 cut(s) 383, 411, 416, 558, 1029
BstMCI CGRYCG 2 cut(s) 293, 1043
BstMWI GCNNNNNNNGC 9 cut(s) 373, 399, 440, 508, 514, 541, 641, 677, 770
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 4 cut(s) 13, 423, 630, 1064
BstSLI GKGCMC 1 cut(s) 453
BstV1I GCAGC 3 cut(s) 169, 360, 1048
BstV2I GAAGAC 2 cut(s) 89, 740
BstX2I RGATCY 2 cut(s) 411, 1029
BstYI RGATCY 2 cut(s) 411, 1029
BstZI CGGCCG 1 cut(s) 290
BsuRI GGCC 6 cut(s) 29, 292, 349, 402, 462, 773
BtgI CCRYGG 1 cut(s) 503
BtgZI GCGATG 2 cut(s) 354, 1102
BtrI CACGTC 1 cut(s) 34
BtsCI GGATG 3 cut(s) 189, 322, 970
Cac8I GCNNGC 8 cut(s) 83, 87, 347, 397, 464, 519, 542, 546
CfoI GCGC 1 cut(s) 395
Cfr10I RCCGGY 1 cut(s) 288
Cfr13I GGNCC 3 cut(s) 347, 401, 461
CseI GACGC 2 cut(s) 432, 893
Csp6I GTAC 2 cut(s) 9, 18
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 2 cut(s) 687, 802
CviQI GTAC 2 cut(s) 9, 18
DpnI GATC 5 cut(s) 385, 413, 418, 560, 1031
DpnII GATC 5 cut(s) 383, 411, 416, 558, 1029
EaeI YGGCCR 1 cut(s) 290
EagI CGGCCG 1 cut(s) 290
EciI GGCGGA 2 cut(s) 550, 1085
EclXI CGGCCG 1 cut(s) 290
Eco31I GGTCTC 3 cut(s) 384, 653, 1067
Eco52I CGGCCG 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 13
FaeI CATG 2 cut(s) 690, 805
FaiI YATR 3 cut(s) 688, 803, 875
FaqI GGGAC 1 cut(s) 543
FatI CATG 2 cut(s) 686, 801
FauI CCCGC 5 cut(s) 338, 471, 504, 520, 537
Fnu4HI GCNGC 9 cut(s) 103, 159, 183, 250, 374, 400, 509, 574, 1037
FokI GGATG 3 cut(s) 176, 329, 977
Fsp4HI GCNGC 9 cut(s) 103, 159, 183, 250, 374, 400, 509, 574, 1037
FspBI CTAG 3 cut(s) 6, 263, 405
GlaI GCGC 1 cut(s) 394
GluI GCNGC 9 cut(s) 103, 159, 183, 250, 374, 400, 509, 574, 1037
HaeIII GGCC 6 cut(s) 29, 292, 349, 402, 462, 773
HapII CCGG 8 cut(s) 115, 289, 299, 424, 454, 614, 632, 1065
HgaI GACGC 2 cut(s) 432, 893
HhaI GCGC 1 cut(s) 395
Hin1I GRCGYC 1 cut(s) 443
Hin1II CATG 2 cut(s) 690, 805
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HpaII CCGG 8 cut(s) 115, 289, 299, 424, 454, 614, 632, 1065
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 4 cut(s) 244, 416, 603, 746
Hpy188III TCNNGA 4 cut(s) 381, 717, 784, 1002
Hpy8I GTNNAC 1 cut(s) 451
Hpy99I CGWCG 6 cut(s) 35, 81, 442, 481, 484, 909
HpyAV CCTTC 5 cut(s) 19, 183, 363, 590, 1087
HpyCH4III ACNGT 1 cut(s) 824
HpyCH4IV ACGT 4 cut(s) 20, 33, 482, 1099
HpyCH4V TGCA 3 cut(s) 451, 521, 873
HpyF10VI GCNNNNNNNGC 9 cut(s) 373, 399, 440, 508, 514, 541, 641, 677, 770
HpySE526I ACGT 4 cut(s) 20, 33, 482, 1099
Hsp92I GRCGYC 1 cut(s) 443
Hsp92II CATG 2 cut(s) 690, 805
HspAI GCGC 1 cut(s) 393
Kzo9I GATC 5 cut(s) 383, 411, 416, 558, 1029
LmnI GCTCC 2 cut(s) 127, 537
Lsp1109I GCAGC 3 cut(s) 169, 360, 1048
MaeI CTAG 3 cut(s) 6, 263, 405
MaeII ACGT 4 cut(s) 20, 33, 482, 1099
MaeIII GTNAC 2 cut(s) 303, 970
MalI GATC 5 cut(s) 385, 413, 418, 560, 1031
MboI GATC 5 cut(s) 383, 411, 416, 558, 1029
MboII GAAGA 4 cut(s) 89, 614, 745, 772
MflI RGATCY 2 cut(s) 411, 1029
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 4 cut(s) 236, 739, 791, 795
MlyI GAGTC 5 cut(s) 54, 79, 304, 548, 796
MmeI TCCRAC 1 cut(s) 336
MseI TTAA 1 cut(s) 794
MslI CAYNNNNRTG 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 8 cut(s) 115, 289, 299, 424, 454, 614, 632, 1065
MspR9I CCNGG 4 cut(s) 15, 425, 632, 1066
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 9 cut(s) 373, 399, 440, 508, 514, 541, 641, 677, 770
NciI CCSGG 3 cut(s) 425, 632, 1066
NdeII GATC 5 cut(s) 383, 411, 416, 558, 1029
NlaIII CATG 2 cut(s) 690, 805
NlaIV GGNNCC 1 cut(s) 413
NmeAIII GCCGAG 4 cut(s) 250, 318, 375, 620
NmuCI GTSAC 2 cut(s) 303, 970
OliI CACNNNNGTG 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 1040
PfeI GAWTC 6 cut(s) 583, 720, 805, 850, 860, 1054
PkrI GCNGC 9 cut(s) 104, 160, 184, 251, 375, 401, 510, 575, 1038
PleI GAGTC 5 cut(s) 53, 78, 303, 548, 795
PpsI GAGTC 5 cut(s) 53, 78, 303, 548, 795
Ppu21I YACGTR 2 cut(s) 21, 1100
PshBI ATTAAT 1 cut(s) 794
Psp6I CCWGG 1 cut(s) 13
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 413
PspPI GGNCC 3 cut(s) 347, 401, 461
PsuI RGATCY 2 cut(s) 411, 1029
RsaI GTAC 2 cut(s) 10, 19
RsaNI GTAC 2 cut(s) 9, 18
RseI CAYNNNNRTG 1 cut(s) 456
SaqAI TTAA 1 cut(s) 794
SatI GCNGC 9 cut(s) 103, 159, 183, 250, 374, 400, 509, 574, 1037
Sau3AI GATC 5 cut(s) 383, 411, 416, 558, 1029
Sau96I GGNCC 3 cut(s) 347, 401, 461
ScaI AGTACT 1 cut(s) 10
SchI GAGTC 5 cut(s) 54, 79, 304, 548, 796
ScrFI CCNGG 4 cut(s) 15, 425, 632, 1066
SduI GDGCHC 1 cut(s) 453
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 1 cut(s) 784
SmoI CTYRAG 1 cut(s) 784
Sse9I AATT 4 cut(s) 236, 739, 791, 795
SspMI CTAG 3 cut(s) 6, 263, 405
StyD4I CCNGG 4 cut(s) 13, 423, 630, 1064
TaaI ACNGT 1 cut(s) 824
TaiI ACGT 4 cut(s) 23, 36, 485, 1102
TaqI TCGA 5 cut(s) 382, 557, 718, 954, 1003
TaqII GACCGA 1 cut(s) 1057
TasI AATT 4 cut(s) 236, 739, 791, 795
TatI WGTACW 1 cut(s) 8
TauI GCSGC 6 cut(s) 105, 161, 252, 402, 511, 576
TfiI GAWTC 6 cut(s) 583, 720, 805, 850, 860, 1054
Tru1I TTAA 1 cut(s) 794
Tru9I TTAA 1 cut(s) 794
TseFI GTSAC 2 cut(s) 303, 970
TseI GCWGC 3 cut(s) 182, 373, 1036
Tsp45I GTSAC 2 cut(s) 303, 970
TspGWI ACGGA 1 cut(s) 436
VneI GTGCAC 1 cut(s) 449
VspI ATTAAT 1 cut(s) 794
XapI RAATTY 2 cut(s) 236, 739
XspI CTAG 3 cut(s) 6, 263, 405
ZrmI AGTACT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.