Rroxscaffold_3G00221140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010620
Physical Location & Seq
Reverse (-)
3801499 .. 3802075
577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221140.1

Sequence Viewer

Length: 357 bp
ATGGCCGCCGGAGTTAGTGGCGAGCCGCGCCGACCACCACCAATGGTGTCGGGGCCGAGCTGCTCGCTTCGTCTCATCAAGCCTAATGACTTTCCTAACTATCATGGTGCAATCGGGTTCGAGTTCCGGCCGCTTCCGGAGGCGGCGCCGCCGTGCAAGGGTGGTTCGGGAGCTTCGAAGGTCAAGGCGAACCTGTGGGTGAAGTTTGGGAAGGTTTCGTGGCCGGTAGCTCGAGTTATCACGTTTGGAACTAAAACGGGTTTTTCGGCCTCCGCCGTCGTCTCCGTGGTTCTGCGGCGCAAGGCGCCTCCTGCACCGCGTACGATCGACTTGAAAGCGTGGGAGGTGATTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.62

Weight (kDa)

10.55

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 145, 304
AccII CGCG 2 cut(s) 28, 319
AccIII TCCGGA 1 cut(s) 136
AciI CCGC 8 cut(s) 6, 26, 131, 143, 149, 273, 295, 317
AcoI YGGCCR 3 cut(s) 3, 128, 221
AcyI GRCGYC 2 cut(s) 146, 305
AfaI GTAC 1 cut(s) 322
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 1 cut(s) 334
AluBI AGCT 3 cut(s) 60, 173, 230
AluI AGCT 3 cut(s) 60, 173, 230
Alw26I GTCTC 2 cut(s) 77, 286
Ama87I CYCGRG 1 cut(s) 231
Aor13HI TCCGGA 1 cut(s) 136
AoxI GGCC 5 cut(s) 3, 53, 128, 221, 267
ApeKI GCWGC 1 cut(s) 60
AspLEI GCGC 4 cut(s) 30, 148, 300, 307
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 211
AsuII TTCGAA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 231
BanI GGYRCC 2 cut(s) 145, 304
BbvI GCAGC 1 cut(s) 47
BceAI ACGGC 2 cut(s) 136, 260
BcoDI GTCTC 2 cut(s) 77, 286
BfoI RGCGCY 2 cut(s) 149, 308
BisI GCNGC 7 cut(s) 6, 26, 61, 131, 144, 149, 296
BlsI GCNGC 7 cut(s) 7, 27, 62, 132, 145, 150, 297
BmeT110I CYCGRG 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 3 cut(s) 54, 147, 306
Bpu14I TTCGAA 1 cut(s) 176
BsaHI GRCGYC 2 cut(s) 146, 305
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse118I RCCGGY 1 cut(s) 223
BseAI TCCGGA 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 158
BseX3I CGGCCG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 297
Bsh1236I CGCG 2 cut(s) 28, 319
Bsh1285I CGRYCG 2 cut(s) 131, 327
BshFI GGCC 5 cut(s) 5, 55, 130, 223, 269
BshNI GGYRCC 2 cut(s) 145, 304
BsiEI CGRYCG 2 cut(s) 131, 327
BsiHKCI CYCGRG 1 cut(s) 231
BsiSI CCGG 4 cut(s) 9, 127, 137, 224
BsiWI CGTACG 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 2 cut(s) 77, 286
BsmBI CGTCTC 2 cut(s) 77, 286
BsnI GGCC 5 cut(s) 5, 55, 130, 223, 269
BsoBI CYCGRG 1 cut(s) 231
Bsp119I TTCGAA 1 cut(s) 176
Bsp13I TCCGGA 1 cut(s) 136
Bsp143I GATC 1 cut(s) 324
BspACI CCGC 8 cut(s) 6, 26, 131, 143, 149, 273, 295, 317
BspANI GGCC 5 cut(s) 5, 55, 130, 223, 269
BspEI TCCGGA 1 cut(s) 136
BspFNI CGCG 2 cut(s) 28, 319
BspLI GGNNCC 3 cut(s) 54, 147, 306
BspT104I TTCGAA 1 cut(s) 176
BspT107I GGYRCC 2 cut(s) 145, 304
BsrFI RCCGGY 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 1 cut(s) 324
BssNI GRCGYC 2 cut(s) 146, 305
BstACI GRCGYC 2 cut(s) 146, 305
BstBI TTCGAA 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 23, 65
BstDSI CCRYGG 1 cut(s) 285
BstFNI CGCG 2 cut(s) 28, 319
BstH2I RGCGCY 2 cut(s) 149, 308
BstHHI GCGC 4 cut(s) 30, 148, 300, 307
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 2 cut(s) 77, 286
BstMBI GATC 1 cut(s) 324
BstMCI CGRYCG 2 cut(s) 131, 327
BstMWI GCNNNNNNNGC 3 cut(s) 27, 304, 311
BstUI CGCG 2 cut(s) 28, 319
BstV1I GCAGC 1 cut(s) 47
BstZI CGGCCG 1 cut(s) 128
BsuRI GGCC 5 cut(s) 5, 55, 130, 223, 269
BtgI CCRYGG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 23, 65
CfoI GCGC 4 cut(s) 30, 148, 300, 307
Cfr10I RCCGGY 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 321
CviAII CATG 1 cut(s) 104
CviQI GTAC 1 cut(s) 321
DinI GGCGCC 2 cut(s) 147, 306
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
EaeI YGGCCR 3 cut(s) 3, 128, 221
EagI CGGCCG 1 cut(s) 128
EciI GGCGGA 1 cut(s) 262
EclXI CGGCCG 1 cut(s) 128
Eco52I CGGCCG 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 231
EgeI GGCGCC 2 cut(s) 147, 306
EheI GGCGCC 2 cut(s) 147, 306
Esp3I CGTCTC 2 cut(s) 77, 286
FaeI CATG 1 cut(s) 107
FaiI YATR 1 cut(s) 105
FatI CATG 1 cut(s) 103
Fnu4HI GCNGC 7 cut(s) 6, 26, 61, 131, 144, 149, 296
Fsp4HI GCNGC 7 cut(s) 6, 26, 61, 131, 144, 149, 296
GlaI GCGC 4 cut(s) 29, 147, 299, 306
GluI GCNGC 7 cut(s) 6, 26, 61, 131, 144, 149, 296
HaeII RGCGCY 2 cut(s) 149, 308
HaeIII GGCC 5 cut(s) 5, 55, 130, 223, 269
HapII CCGG 4 cut(s) 9, 127, 137, 224
HhaI GCGC 4 cut(s) 30, 148, 300, 307
Hin1I GRCGYC 2 cut(s) 146, 305
Hin1II CATG 1 cut(s) 107
Hin6I GCGC 4 cut(s) 28, 146, 298, 305
HinP1I GCGC 4 cut(s) 28, 146, 298, 305
HpaII CCGG 4 cut(s) 9, 127, 137, 224
HphI GGTGA 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 137, 168
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 172, 205
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 3 cut(s) 110, 156, 314
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 304, 311
HpySE526I ACGT 1 cut(s) 242
Hsp92I GRCGYC 2 cut(s) 146, 305
Hsp92II CATG 1 cut(s) 107
HspAI GCGC 4 cut(s) 28, 146, 298, 305
KasI GGCGCC 2 cut(s) 145, 304
Kpn2I TCCGGA 1 cut(s) 136
Kzo9I GATC 1 cut(s) 324
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 6 cut(s) 22, 140, 150, 206, 237, 324
Lsp1109I GCAGC 1 cut(s) 47
MaeII ACGT 1 cut(s) 242
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
Mly113I GGCGCC 2 cut(s) 146, 305
MnlI CCTC 4 cut(s) 133, 280, 318, 337
MroI TCCGGA 1 cut(s) 136
MspI CCGG 4 cut(s) 9, 127, 137, 224
MvnI CGCG 2 cut(s) 28, 319
MwoI GCNNNNNNNGC 3 cut(s) 27, 304, 311
NarI GGCGCC 2 cut(s) 146, 305
NdeII GATC 1 cut(s) 324
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 3 cut(s) 54, 147, 306
NmeAIII GCCGAG 1 cut(s) 81
NspV TTCGAA 1 cut(s) 176
PaeR7I CTCGAG 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 173
Pfl23II CGTACG 1 cut(s) 320
PkrI GCNGC 7 cut(s) 7, 27, 62, 132, 145, 150, 297
Ple19I CGATCG 1 cut(s) 327
PluTI GGCGCC 2 cut(s) 149, 308
PspLI CGTACG 1 cut(s) 320
PspN4I GGNNCC 3 cut(s) 54, 147, 306
PspPI GGNCC 1 cut(s) 53
PspXI VCTCGAGB 1 cut(s) 231
PvuI CGATCG 1 cut(s) 327
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
SatI GCNGC 7 cut(s) 6, 26, 61, 131, 144, 149, 296
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 1 cut(s) 53
SetI ASST 8 cut(s) 62, 175, 183, 195, 216, 232, 245, 348
SfoI GGCGCC 2 cut(s) 147, 306
Sfr274I CTCGAG 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 176
SlaI CTCGAG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
SsiI CCGC 8 cut(s) 6, 26, 131, 143, 149, 273, 295, 317
SspDI GGCGCC 2 cut(s) 145, 304
TaiI ACGT 1 cut(s) 245
TaqI TCGA 4 cut(s) 120, 176, 232, 327
TauI GCSGC 6 cut(s) 8, 28, 133, 146, 151, 298
TseI GCWGC 1 cut(s) 60
TspGWI ACGGA 1 cut(s) 274
XhoI CTCGAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.