Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000134.1

Orthogroup ID

OG0010620

Physical Location & Seq

Genomic Coordinates Forward (+)

45151 .. 45777

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000134.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggttttgaagttatattactgtgttttggacgaaaccctaattcagaaggacaccggatttaatcggctcaaagagctcacgttgtttgagactgattttgatggagtagtcgtggagctgctttctagatcccctaatcttgagatattgatactcaagccatctcgtggaagtgtagataaatatattgaactttgtgatcttcccaagctgaagaaggttgaattttggcctcaaggttatagctacaagattgaagcagccaatcttcaaactcttatacacaacgattgtatggcctttagcccgctgccgcacatcggagcactcaactgcggtaacataaaggagatcaaaatgtaccttggccattctaccgttaccaaagaatatattgtcaaacttatttctaagtttccatttcttgaggagttgatcttgcgcgcttccctctcatcaaaggagcagaaaggctcttgtcgtctggacgagttacaagattactttacttctaagtttccaaatcttcgagcttgccgcttaaggggttgttatgagcattatggcaattcaattagttcttttgttaaacatgaggaggagaacttggtttccaattattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

208

Amino Acids

23.99

Weight (kDa)

6.53

Isoelectric Point (pI)

53.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010620)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0477771 RchiOBHm_Chr3g0492151 RchiOBHm_Chr4g0410721 RchiOBHm_Chr6g0246591
rosa_laevigata	RLG00000002711
rosa_multiflora	Rmu_ssc0000134.1_g000010
rosa_roxburghii	Rroxscaffold_3G00221140 Rroxscaffold_3G00244930 Rroxscaffold_4G00301550 Rroxscaffold_4G00309800 Rroxscaffold_4G00330610 Rroxscaffold_5G00348660 Rroxscaffold_6G00402690
rosa_rugosa	Rorug04G0074400 Rorug07G0148500
rosa_samantha	Rh7AG285000 Rh7CG237300 Rh7CG304200 Rh7DG081600 Rh7DG288600
rosa_wichuraiana	Rw7G024330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	170
AccII	CGCG	1 cut(s)	447
AciI	CCGC	4 cut(s)	311, 317, 339, 541
AclWI	GGATC	1 cut(s)	126
AcoI	YGGCCR	1 cut(s)	370
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	3 cut(s)	170, 323, 547
AflII	CTTAAG	1 cut(s)	544
AgsI	TTSAA	6 cut(s)	10, 194, 227, 260, 275, 576
AloI	GAACNNNNNNTCC	1 cut(s)	599
AluBI	AGCT	5 cut(s)	79, 121, 214, 249, 536
AluI	AGCT	5 cut(s)	79, 121, 214, 249, 536
Alw21I	GWGCWC	2 cut(s)	81, 331
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	126
AoxI	GGCC	3 cut(s)	233, 300, 370
ApeKI	GCWGC	3 cut(s)	121, 263, 313
ApoI	RAATTY	1 cut(s)	227
AspLEI	GCGC	2 cut(s)	447, 449
BalI	TGGCCA	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	81
BarI	GAAGNNNNNNTAC	1 cut(s)	34
BauI	CACGAG	1 cut(s)	168
Bbv12I	GWGCWC	2 cut(s)	81, 331
BbvI	GCAGC	3 cut(s)	108, 275, 300
BccI	CCATC	2 cut(s)	98, 172
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	129
BfrI	CTTAAG	1 cut(s)	544
BisI	GCNGC	5 cut(s)	122, 264, 314, 317, 541
BlsI	GCNGC	5 cut(s)	123, 265, 315, 318, 542
BpuEI	CTTGAG	4 cut(s)	143, 164, 222, 449
BsaJI	CCNNGG	1 cut(s)	367
BsaWI	WCCGGW	1 cut(s)	56
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 323, 547
BseDI	CCNNGG	1 cut(s)	367
BseLI	CCNNNNNNNGG	3 cut(s)	170, 323, 547
BsePI	GCGCGC	1 cut(s)	445
BseRI	GAGGAG	3 cut(s)	446, 614, 617
BseXI	GCAGC	3 cut(s)	108, 275, 300
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	3 cut(s)	235, 302, 372
BsiHKAI	GWGCWC	2 cut(s)	81, 331
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	3 cut(s)	170, 323, 547
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	3 cut(s)	235, 302, 372
Bsp1286I	GDGCHC	2 cut(s)	81, 331
Bsp143I	GATC	4 cut(s)	131, 202, 354, 438
BspACI	CCGC	4 cut(s)	311, 317, 339, 541
BspANI	GGCC	3 cut(s)	235, 302, 372
BspFNI	CGCG	1 cut(s)	447
BspPI	GGATC	1 cut(s)	126
BspTI	CTTAAG	1 cut(s)	544
BssECI	CCNNGG	1 cut(s)	367
BssHII	GCGCGC	1 cut(s)	445
BssMI	GATC	4 cut(s)	131, 202, 354, 438
BssSI	CACGAG	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	367
Bst2BI	CACGAG	1 cut(s)	168
Bst4CI	ACNGT	2 cut(s)	23, 382
BstAFI	CTTAAG	1 cut(s)	544
BstC8I	GCNNGC	3 cut(s)	311, 447, 538
BstDEI	CTNAG	2 cut(s)	414, 516
BstFNI	CGCG	1 cut(s)	447
BstHHI	GCGC	2 cut(s)	447, 449
BstKTI	GATC	4 cut(s)	134, 205, 357, 441
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	4 cut(s)	131, 202, 354, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	3 cut(s)	108, 275, 300
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	3 cut(s)	235, 302, 372
Cac8I	GCNNGC	3 cut(s)	311, 447, 538
CfoI	GCGC	2 cut(s)	447, 449
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	1 cut(s)	596
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	2 cut(s)	414, 516
DpnI	GATC	4 cut(s)	133, 204, 356, 440
DpnII	GATC	4 cut(s)	131, 202, 354, 438
EaeI	YGGCCR	1 cut(s)	370
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	1 cut(s)	599
FatI	CATG	1 cut(s)	595
FauI	CCCGC	1 cut(s)	318
Fnu4HI	GCNGC	5 cut(s)	122, 264, 314, 317, 541
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	5 cut(s)	122, 264, 314, 317, 541
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	2 cut(s)	446, 448
GluI	GCNGC	5 cut(s)	122, 264, 314, 317, 541
HaeIII	GGCC	3 cut(s)	235, 302, 372
HapII	CCGG	1 cut(s)	57
HhaI	GCGC	2 cut(s)	447, 449
Hin1II	CATG	1 cut(s)	599
Hin6I	GCGC	2 cut(s)	445, 447
HinP1I	GCGC	2 cut(s)	445, 447
HpaII	CCGG	1 cut(s)	57
Hpy188I	TCNGA	2 cut(s)	48, 326
Hpy188III	TCNNGA	4 cut(s)	129, 143, 428, 488
HpyAV	CCTTC	2 cut(s)	43, 214
HpyCH4III	ACNGT	2 cut(s)	23, 382
HpyCH4IV	ACGT	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	2 cut(s)	414, 516
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	599
HspAI	GCGC	2 cut(s)	445, 447
Kzo9I	GATC	4 cut(s)	131, 202, 354, 438
LmnI	GCTCC	3 cut(s)	118, 326, 466
LpnPI	CCDG	2 cut(s)	70, 473
Lsp1109I	GCAGC	3 cut(s)	108, 275, 300
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	3 cut(s)	341, 382, 495
MalI	GATC	4 cut(s)	133, 204, 356, 440
MboI	GATC	4 cut(s)	131, 202, 354, 438
MboII	GAAGA	4 cut(s)	197, 229, 263, 521
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	2 cut(s)	81, 331
MlsI	TGGCCA	1 cut(s)	372
MluCI	AATT	5 cut(s)	42, 227, 571, 576, 619
MluNI	TGGCCA	1 cut(s)	372
MnlI	CCTC	5 cut(s)	246, 424, 464, 592, 595
Mox20I	TGGCCA	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	372
MseI	TTAA	3 cut(s)	63, 545, 591
Msp20I	TGGCCA	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	313
MspCI	CTTAAG	1 cut(s)	544
MspI	CCGG	1 cut(s)	57
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	4 cut(s)	131, 202, 354, 438
NlaIII	CATG	1 cut(s)	599
PauI	GCGCGC	1 cut(s)	445
PflMI	CCANNNNNTGG	1 cut(s)	170
PkrI	GCNGC	5 cut(s)	123, 265, 315, 318, 542
Psp124BI	GAGCTC	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	131
PteI	GCGCGC	1 cut(s)	445
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	63, 545, 591
SatI	GCNGC	5 cut(s)	122, 264, 314, 317, 541
Sau3AI	GATC	4 cut(s)	131, 202, 354, 438
SduI	GDGCHC	2 cut(s)	81, 331
SetI	ASST	9 cut(s)	81, 86, 123, 216, 225, 244, 251, 369, 538
SmlI	CTYRAG	5 cut(s)	143, 158, 237, 428, 544
SmoI	CTYRAG	5 cut(s)	143, 158, 237, 428, 544
Sse9I	AATT	5 cut(s)	42, 227, 571, 576, 619
SsiI	CCGC	4 cut(s)	311, 317, 339, 541
SspMI	CTAG	1 cut(s)	129
SstI	GAGCTC	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	2 cut(s)	23, 382
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	532
TasI	AATT	5 cut(s)	42, 227, 571, 576, 619
TauI	GCSGC	2 cut(s)	319, 543
Tru1I	TTAA	3 cut(s)	63, 545, 591
Tru9I	TTAA	3 cut(s)	63, 545, 591
TseI	GCWGC	3 cut(s)	121, 263, 313
Van91I	CCANNNNNTGG	1 cut(s)	170
Vha464I	CTTAAG	1 cut(s)	544
XapI	RAATTY	1 cut(s)	227
XbaI	TCTAGA	1 cut(s)	128
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.