Rh7DG288600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010620
Physical Location & Seq
Forward (+)
32244500 .. 32245515
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG288600.1

Sequence Viewer

Length: 330 bp
ATGGCCTTTAGCCCGCTGCCGGACATCGGAGCACTCAACTGCGGTAACATAAAGGAGATCAAAATGTACCTTGGCCATTCTACCGTTACCAAAGAATATATTGTGAAACTTATTTCTAAGTTTCCATTTCTTGAGGATTTGATCTTGCGCGCTTCCCTCTCATCAAAGGAGCAGAAAGGCTCTTGTCGTCTGGACGAGTTACAAGATTACTTTACTTCTAAGTTTCCAAATCTTCGAGCTTGCCGCTTAAGGGGCTGTTATGAGCATTATGGCAATTCAATTAATTCTTTTGTTAAACATGAGGAGGAGAACTTGGGTTCCAATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.47

Weight (kDa)

7.66

Isoelectric Point (pI)

55.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 150
AciI CCGC 3 cut(s) 14, 42, 244
AcoI YGGCCR 1 cut(s) 73
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 3 cut(s) 19, 26, 250
AflII CTTAAG 1 cut(s) 247
AgsI TTSAA 1 cut(s) 279
AloI GAACNNNNNNTCC 1 cut(s) 302
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Alw21I GWGCWC 1 cut(s) 34
AoxI GGCC 2 cut(s) 3, 73
ApeKI GCWGC 1 cut(s) 16
AseI ATTAAT 1 cut(s) 282
AspLEI GCGC 2 cut(s) 150, 152
BalI TGGCCA 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 3
BfrI CTTAAG 1 cut(s) 247
BisI GCNGC 2 cut(s) 17, 244
BlsI GCNGC 2 cut(s) 18, 245
BmiI GGNNCC 1 cut(s) 319
BpuEI CTTGAG 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 26, 250
BseDI CCNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 3 cut(s) 19, 26, 250
BsePI GCGCGC 1 cut(s) 148
BseRI GAGGAG 2 cut(s) 317, 320
BseXI GCAGC 1 cut(s) 3
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 5, 75
BsiHKAI GWGCWC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 3 cut(s) 19, 26, 250
BsnI GGCC 2 cut(s) 5, 75
Bsp1286I GDGCHC 1 cut(s) 34
Bsp143I GATC 2 cut(s) 57, 141
BspACI CCGC 3 cut(s) 14, 42, 244
BspANI GGCC 2 cut(s) 5, 75
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 319
BspTI CTTAAG 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 70
BssHII GCGCGC 1 cut(s) 148
BssMI GATC 2 cut(s) 57, 141
BssT1I CCWWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 85
BstAFI CTTAAG 1 cut(s) 247
BstC8I GCNNGC 3 cut(s) 14, 150, 241
BstDEI CTNAG 2 cut(s) 117, 219
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 2 cut(s) 150, 152
BstKTI GATC 2 cut(s) 60, 144
BstMBI GATC 2 cut(s) 57, 141
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 3
BsuRI GGCC 2 cut(s) 5, 75
Cac8I GCNNGC 3 cut(s) 14, 150, 241
CfoI GCGC 2 cut(s) 150, 152
Csp6I GTAC 1 cut(s) 67
CviAII CATG 1 cut(s) 299
CviJI RGCY 6 cut(s) 5, 12, 75, 180, 239, 255
CviKI_1 RGCY 6 cut(s) 5, 12, 75, 180, 239, 255
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 2 cut(s) 117, 219
DpnI GATC 2 cut(s) 59, 143
DpnII GATC 2 cut(s) 57, 141
EaeI YGGCCR 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 1 cut(s) 302
FaiI YATR 5 cut(s) 50, 99, 261, 270, 300
FatI CATG 1 cut(s) 298
FauI CCCGC 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 17, 244
Fsp4HI GCNGC 2 cut(s) 17, 244
GlaI GCGC 2 cut(s) 149, 151
GluI GCNGC 2 cut(s) 17, 244
HaeIII GGCC 2 cut(s) 5, 75
HapII CCGG 1 cut(s) 20
HhaI GCGC 2 cut(s) 150, 152
Hin1II CATG 1 cut(s) 302
Hin6I GCGC 2 cut(s) 148, 150
HinP1I GCGC 2 cut(s) 148, 150
HpaII CCGG 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 29
Hpy188III TCNNGA 2 cut(s) 131, 191
HpyCH4III ACNGT 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
HpyF3I CTNAG 2 cut(s) 117, 219
Hsp92II CATG 1 cut(s) 302
HspAI GCGC 2 cut(s) 148, 150
Kzo9I GATC 2 cut(s) 57, 141
LmnI GCTCC 2 cut(s) 29, 169
LpnPI CCDG 2 cut(s) 33, 176
Lsp1109I GCAGC 1 cut(s) 3
MaeIII GTNAC 3 cut(s) 44, 85, 198
MalI GATC 2 cut(s) 59, 143
MboI GATC 2 cut(s) 57, 141
MboII GAAGA 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 34
MlsI TGGCCA 1 cut(s) 75
MluCI AATT 4 cut(s) 274, 279, 283, 322
MluNI TGGCCA 1 cut(s) 75
MnlI CCTC 4 cut(s) 127, 167, 295, 298
Mox20I TGGCCA 1 cut(s) 75
MscI TGGCCA 1 cut(s) 75
MseI TTAA 3 cut(s) 248, 282, 294
Msp20I TGGCCA 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 16
MspCI CTTAAG 1 cut(s) 247
MspI CCGG 1 cut(s) 20
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 252
NdeII GATC 2 cut(s) 57, 141
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 1 cut(s) 319
PauI GCGCGC 1 cut(s) 148
PkrI GCNGC 2 cut(s) 18, 245
PshBI ATTAAT 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 319
PteI GCGCGC 1 cut(s) 148
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SaqAI TTAA 3 cut(s) 248, 282, 294
SatI GCNGC 2 cut(s) 17, 244
Sau3AI GATC 2 cut(s) 57, 141
SduI GDGCHC 1 cut(s) 34
SetI ASST 2 cut(s) 72, 241
SmlI CTYRAG 2 cut(s) 131, 247
SmoI CTYRAG 2 cut(s) 131, 247
Sse9I AATT 4 cut(s) 274, 279, 283, 322
SsiI CCGC 3 cut(s) 14, 42, 244
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 235
TasI AATT 4 cut(s) 274, 279, 283, 322
TauI GCSGC 1 cut(s) 246
Tru1I TTAA 3 cut(s) 248, 282, 294
Tru9I TTAA 3 cut(s) 248, 282, 294
TseI GCWGC 1 cut(s) 16
Vha464I CTTAAG 1 cut(s) 247
VspI ATTAAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.