Rroxscaffold_4G00330610

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
64332050 .. 64334055
2006 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00330610.1

Sequence Viewer

Length: 174 bp
ATGAATCGAAGCAAAGAAGGTCAGACCACTTTTCTGACATTTCTTCAAATTCCGGCCAACTCCGGCAAAAGTAGGAGGGGAGACCAACTGGGCTTTGTTCGCCTTGCCATGCTCTACAAACTCACCAAGTTTCACATCTCGATTCAACCCGAGGAAGACGAATTTCGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.65

Weight (kDa)

9.81

Isoelectric Point (pI)

62.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 48, 161
AgsI TTSAA 2 cut(s) 47, 146
Alw26I GTCTC 1 cut(s) 75
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 1 cut(s) 54
ApoI RAATTY 2 cut(s) 48, 161
AsuHPI GGTGA 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 75
BmeT110I CYCGRG 1 cut(s) 149
BmrI ACTGGG 1 cut(s) 98
BmuI ACTGGG 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 93
BshFI GGCC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 2 cut(s) 53, 63
BsmAI GTCTC 1 cut(s) 75
BsnI GGCC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 149
BspANI GGCC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 75
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 162
BsuRI GGCC 1 cut(s) 56
CviAII CATG 1 cut(s) 109
CviJI RGCY 2 cut(s) 56, 93
CviKI_1 RGCY 2 cut(s) 56, 93
EaeI YGGCCR 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 149
FaeI CATG 1 cut(s) 112
FaiI YATR 1 cut(s) 110
FatI CATG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 56
HapII CCGG 2 cut(s) 53, 63
Hin1II CATG 1 cut(s) 112
HinfI GANTC 2 cut(s) 4, 142
HpaII CCGG 2 cut(s) 53, 63
HphI GGTGA 1 cut(s) 115
Hpy188I TCNGA 3 cut(s) 24, 36, 168
Hpy188III TCNNGA 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 112
LpnPI CCDG 3 cut(s) 66, 74, 76
MboII GAAGA 2 cut(s) 35, 167
MluCI AATT 2 cut(s) 48, 161
MnlI CCTC 2 cut(s) 69, 145
MspI CCGG 2 cut(s) 53, 63
MwoI GCNNNNNNNGC 1 cut(s) 99
NlaIII CATG 1 cut(s) 112
PfeI GAWTC 2 cut(s) 4, 142
SetI ASST 1 cut(s) 22
SgeI CNNG 9 cut(s) 65, 75, 101, 116, 121, 139, 151, 161, 163
Sse9I AATT 2 cut(s) 48, 161
TaqI TCGA 2 cut(s) 7, 140
TasI AATT 2 cut(s) 48, 161
TfiI GAWTC 2 cut(s) 4, 142
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 48, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.