RchiOBHm_Chr3g0492151

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0010620
Physical Location & Seq
Reverse (-)
38890189 .. 38896611
6423 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45504

Sequence Viewer

Length: 363 bp
ATGCAGCCGAGGGGCAGTGCAAGGTGGAGAGATGGCGGTGCGCGCGGACACGGGTTGCAGCCTTGGTGGATTGTGGTTCGGCCTTGGTGGATCGCAGAGCTGGTTCCGTGTGGGAAATGGTGTTTGGGCTGGGCCTTGGTGTTAGGGCCCGGCTATTTGGGCCTTTGTTTGTTTTCTGTTTTGTTTGGTTTGAGTTTATTTATTTTTGGTTGGTTTGTGTCTTTCAGTTTTTGCAGTGTTAAGTCCATACTCTGTCGAGTTATGGTAGTCGCCGTTGATTCCGGCAAGCGATTGGAGTTGAGTAGCTGGTTTGTTGCTAAAACCCTAATTTTCTTCCCTGCCATCCAAAATCTAGAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.53

Weight (kDa)

9.5

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 43, 45
AciI CCGC 2 cut(s) 36, 45
AclWI GGATC 1 cut(s) 98
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 2 cut(s) 100, 306
AluI AGCT 2 cut(s) 100, 306
AlwI GGATC 1 cut(s) 98
AoxI GGCC 4 cut(s) 80, 132, 146, 160
ApaI GGGCCC 1 cut(s) 150
ApeKI GCWGC 2 cut(s) 4, 58
AspLEI GCGC 2 cut(s) 43, 45
AspS9I GGNCC 4 cut(s) 132, 146, 147, 160
AsuC2I CCSGG 1 cut(s) 150
BaeGI GKGCMC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 16, 70
BccI CCATC 2 cut(s) 26, 350
BceAI ACGGC 1 cut(s) 257
BcnI CCSGG 1 cut(s) 150
BfaI CTAG 1 cut(s) 353
BisI GCNGC 2 cut(s) 5, 59
BlsI GCNGC 2 cut(s) 6, 60
Bme1390I CCNGG 1 cut(s) 150
BmgT120I GGNCC 4 cut(s) 132, 146, 147, 160
BmiI GGNNCC 2 cut(s) 105, 148
BmrFI CCNGG 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 150
BsaJI CCNNGG 4 cut(s) 8, 62, 83, 135
BseDI CCNNGG 4 cut(s) 8, 62, 83, 135
BseGI GGATG 1 cut(s) 342
BsePI GCGCGC 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 150
BseXI GCAGC 2 cut(s) 16, 70
BseYI CCCAGC 1 cut(s) 129
Bsh1236I CGCG 2 cut(s) 43, 45
BshFI GGCC 4 cut(s) 82, 134, 148, 162
BsiSI CCGG 2 cut(s) 150, 282
BsnI GGCC 4 cut(s) 82, 134, 148, 162
Bsp120I GGGCCC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 2 cut(s) 36, 45
BspANI GGCC 4 cut(s) 82, 134, 148, 162
BspFNI CGCG 2 cut(s) 43, 45
BspLI GGNNCC 2 cut(s) 105, 148
BspPI GGATC 1 cut(s) 98
BssECI CCNNGG 4 cut(s) 8, 62, 83, 135
BssHII GCGCGC 1 cut(s) 41
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 3 cut(s) 62, 83, 135
BstC8I GCNNGC 2 cut(s) 43, 287
BstF5I GGATG 1 cut(s) 342
BstFNI CGCG 2 cut(s) 43, 45
BstHHI GCGC 2 cut(s) 43, 45
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 2 cut(s) 42, 159
BstSCI CCNGG 1 cut(s) 148
BstSLI GKGCMC 1 cut(s) 150
BstUI CGCG 2 cut(s) 43, 45
BstV1I GCAGC 2 cut(s) 16, 70
BsuRI GGCC 4 cut(s) 82, 134, 148, 162
BtsCI GGATG 1 cut(s) 342
BtsI GCAGTG 2 cut(s) 22, 241
BtsIMutI CAGTG 2 cut(s) 22, 241
Cac8I GCNNGC 2 cut(s) 43, 287
CfoI GCGC 2 cut(s) 43, 45
Cfr13I GGNCC 4 cut(s) 132, 146, 147, 160
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eco130I CCWWGG 3 cut(s) 62, 83, 135
Eco24I GRGCYC 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 146
EcoT14I CCWWGG 3 cut(s) 62, 83, 135
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 3 cut(s) 62, 83, 135
FaiI YATR 3 cut(s) 248, 263, 361
Fnu4HI GCNGC 2 cut(s) 5, 59
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 5, 59
FspBI CTAG 1 cut(s) 353
GlaI GCGC 2 cut(s) 42, 44
GluI GCNGC 2 cut(s) 5, 59
GsaI CCCAGC 1 cut(s) 133
HaeIII GGCC 4 cut(s) 82, 134, 148, 162
HapII CCGG 2 cut(s) 150, 282
HhaI GCGC 2 cut(s) 43, 45
Hin6I GCGC 2 cut(s) 41, 43
HinP1I GCGC 2 cut(s) 41, 43
HinfI GANTC 2 cut(s) 278, 356
HpaII CCGG 2 cut(s) 150, 282
Hpy188III TCNNGA 1 cut(s) 353
HpyCH4V TGCA 4 cut(s) 4, 20, 58, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 159
HspAI GCGC 2 cut(s) 41, 43
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 6 cut(s) 86, 115, 163, 292, 295, 351
Lsp1109I GCAGC 2 cut(s) 16, 70
MaeI CTAG 1 cut(s) 353
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 1 cut(s) 327
MnlI CCTC 1 cut(s) 3
MseI TTAA 1 cut(s) 240
MspI CCGG 2 cut(s) 150, 282
MspR9I CCNGG 1 cut(s) 150
MvnI CGCG 2 cut(s) 43, 45
MwoI GCNNNNNNNGC 2 cut(s) 42, 159
NciI CCSGG 1 cut(s) 150
NdeII GATC 1 cut(s) 90
NlaIV GGNNCC 2 cut(s) 105, 148
NmeAIII GCCGAG 1 cut(s) 33
PauI GCGCGC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 6, 60
PspFI CCCAGC 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 105, 148
PspOMI GGGCCC 1 cut(s) 146
PspPI GGNCC 4 cut(s) 132, 146, 147, 160
PteI GCGCGC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 2 cut(s) 5, 59
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 4 cut(s) 132, 146, 147, 160
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 1 cut(s) 150
SetI ASST 3 cut(s) 26, 102, 308
Sse9I AATT 1 cut(s) 327
SsiI CCGC 2 cut(s) 36, 45
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 3 cut(s) 62, 83, 135
TaqI TCGA 1 cut(s) 256
TasI AATT 1 cut(s) 327
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 2 cut(s) 22, 241
TseI GCWGC 2 cut(s) 4, 58
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 2 cut(s) 22, 241
XbaI TCTAGA 1 cut(s) 352
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.