Rh7AG285000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0010620
Physical Location & Seq
Forward (+)
30514019 .. 30515039
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG285000.1

Sequence Viewer

Length: 702 bp
ATGTCGACCGGCCGCTGGCTAAACTTGATCACCAAACACATTTTCCGAGAGATAGTGCTAGATTTCCCGTACCACGGCAGGTCTAAAAAGTACAGATTTCCTCCTACTAGTTTTGATGTTGGGTCGTTAATGGTTTTGAAGTTATATTACTGTGTTTTGGACGAAACCCTAATTCAGAAGGACGGATTTAATCGGCTCAAAGAGCTCACGTTGTTTGAGACTGATTTTGATGGAGTAGTCGTGGTGCTGCTTTCTAGATCCCCTAATCTTGAGATATTGATACTCAAGCCATCTCGTGGAAGTATAGATAAATATATTGAACTTTCTGATCTTCCCAAGCTCAAGAAGGTTGAATTTTGGCCTCAAGGTTATAGCTACAAGATTGAAGCAGCCAATCTTCAAACTCTTATACACAACGATTGTATGGCCTTTAGCCCGCTGCCGGACATCGGAGCACTCAACTGCGGTAACATAAAGGAGATCAAAATGTACCTTGGCCATTCTATCGTTACCAAAGAATATATTGTGAAACTTATTTCTAAGTTTCCATTTCTTGAGGAGTTGATCTTGCGCGCCTCCCTCGCATCAAAGGAGCAGAAAGGCTCTTGTCGTGTGGACGAGTTACAAGATTACTTTACTTCTAAGTTTCCAAATCTTCGAGCTTGCCGCTTAAGGGGCTGTTATGAGCATTATGGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

233

Amino Acids

26.95

Weight (kDa)

8.77

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 5 - 138 3.7e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 69
AccB7I CCANNNNNTGG 1 cut(s) 296
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 573
AciI CCGC 4 cut(s) 13, 437, 465, 667
AclWI GGATC 1 cut(s) 252
AcoI YGGCCR 2 cut(s) 10, 496
AcsI RAATTY 1 cut(s) 353
AfaI GTAC 3 cut(s) 71, 92, 491
AfiI CCNNNNNNNGG 6 cut(s) 15, 74, 296, 442, 449, 673
AflII CTTAAG 1 cut(s) 670
AgsI TTSAA 5 cut(s) 139, 320, 353, 386, 401
AhlI ACTAGT 1 cut(s) 107
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 4 cut(s) 205, 340, 375, 662
AluI AGCT 4 cut(s) 205, 340, 375, 662
Alw21I GWGCWC 2 cut(s) 207, 457
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 1 cut(s) 252
AoxI GGCC 4 cut(s) 10, 359, 426, 496
ApeKI GCWGC 3 cut(s) 247, 389, 439
ApoI RAATTY 1 cut(s) 353
AspLEI GCGC 2 cut(s) 573, 575
AsuHPI GGTGA 1 cut(s) 22
BalI TGGCCA 1 cut(s) 498
BanII GRGCYC 1 cut(s) 207
BarI GAAGNNNNNNTAC 2 cut(s) 131, 163
BauI CACGAG 1 cut(s) 294
Bbv12I GWGCWC 2 cut(s) 207, 457
BbvI GCAGC 3 cut(s) 234, 401, 426
BccI CCATC 2 cut(s) 224, 298
BceAI ACGGC 1 cut(s) 91
BclI TGATCA 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 212
BcuI ACTAGT 1 cut(s) 107
BfaI CTAG 3 cut(s) 59, 108, 255
BfrI CTTAAG 1 cut(s) 670
BfuAI ACCTGC 1 cut(s) 69
BisI GCNGC 5 cut(s) 13, 248, 390, 440, 667
BlsI GCNGC 5 cut(s) 14, 249, 391, 441, 668
BmsI GCATC 1 cut(s) 593
BpuEI CTTGAG 5 cut(s) 269, 290, 326, 348, 575
BsaJI CCNNGG 2 cut(s) 73, 493
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 6 cut(s) 15, 74, 296, 442, 449, 673
Bse118I RCCGGY 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 73, 493
BseLI CCNNNNNNNGG 6 cut(s) 15, 74, 296, 442, 449, 673
BsePI GCGCGC 1 cut(s) 571
BseRI GAGGAG 1 cut(s) 572
BseX3I CGGCCG 1 cut(s) 10
BseXI GCAGC 3 cut(s) 234, 401, 426
Bsh1236I CGCG 1 cut(s) 573
Bsh1285I CGRYCG 2 cut(s) 9, 13
BshFI GGCC 4 cut(s) 12, 361, 428, 498
BsiEI CGRYCG 2 cut(s) 9, 13
BsiHKAI GWGCWC 2 cut(s) 207, 457
BsiSI CCGG 2 cut(s) 9, 443
BslI CCNNNNNNNGG 6 cut(s) 15, 74, 296, 442, 449, 673
BsmAI GTCTC 1 cut(s) 212
BsnI GGCC 4 cut(s) 12, 361, 428, 498
Bsp1286I GDGCHC 2 cut(s) 207, 457
Bsp143I GATC 5 cut(s) 27, 257, 328, 480, 564
BspACI CCGC 4 cut(s) 13, 437, 465, 667
BspANI GGCC 4 cut(s) 12, 361, 428, 498
BspFNI CGCG 1 cut(s) 573
BspMI ACCTGC 1 cut(s) 69
BspPI GGATC 1 cut(s) 252
BspTI CTTAAG 1 cut(s) 670
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 2 cut(s) 73, 493
BssHII GCGCGC 1 cut(s) 571
BssMI GATC 5 cut(s) 27, 257, 328, 480, 564
BssSI CACGAG 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 493
Bst2BI CACGAG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 152
BstAFI CTTAAG 1 cut(s) 670
BstC8I GCNNGC 4 cut(s) 17, 437, 573, 664
BstDEI CTNAG 2 cut(s) 540, 642
BstDSI CCRYGG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 573
BstHHI GCGC 2 cut(s) 573, 575
BstKTI GATC 5 cut(s) 30, 260, 331, 483, 567
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 5 cut(s) 27, 257, 328, 480, 564
BstMCI CGRYCG 2 cut(s) 9, 13
BstMWI GCNNNNNNNGC 3 cut(s) 202, 581, 675
BstUI CGCG 1 cut(s) 573
BstV1I GCAGC 3 cut(s) 234, 401, 426
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BstZI CGGCCG 1 cut(s) 10
BsuRI GGCC 4 cut(s) 12, 361, 428, 498
BtgI CCRYGG 1 cut(s) 73
BveI ACCTGC 1 cut(s) 69
Cac8I GCNNGC 4 cut(s) 17, 437, 573, 664
CfoI GCGC 2 cut(s) 573, 575
Cfr10I RCCGGY 1 cut(s) 8
Csp6I GTAC 3 cut(s) 70, 91, 490
CviQI GTAC 3 cut(s) 70, 91, 490
DdeI CTNAG 2 cut(s) 540, 642
DpnI GATC 5 cut(s) 29, 259, 330, 482, 566
DpnII GATC 5 cut(s) 27, 257, 328, 480, 564
EaeI YGGCCR 2 cut(s) 10, 496
EagI CGGCCG 1 cut(s) 10
Ecl136II GAGCTC 1 cut(s) 205
EclXI CGGCCG 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 493
Eco24I GRGCYC 1 cut(s) 207
Eco52I CGGCCG 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 493
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 493
FauI CCCGC 1 cut(s) 444
FbaI TGATCA 1 cut(s) 27
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 5 cut(s) 13, 248, 390, 440, 667
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 5 cut(s) 13, 248, 390, 440, 667
FspBI CTAG 3 cut(s) 59, 108, 255
GlaI GCGC 2 cut(s) 572, 574
GluI GCNGC 5 cut(s) 13, 248, 390, 440, 667
HaeIII GGCC 4 cut(s) 12, 361, 428, 498
HapII CCGG 2 cut(s) 9, 443
HhaI GCGC 2 cut(s) 573, 575
Hin6I GCGC 2 cut(s) 571, 573
HinP1I GCGC 2 cut(s) 571, 573
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HpaII CCGG 2 cut(s) 9, 443
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 2 cut(s) 6, 616
Hpy188I TCNGA 4 cut(s) 47, 177, 328, 452
Hpy188III TCNNGA 4 cut(s) 255, 269, 343, 554
Hpy8I GTNNAC 2 cut(s) 6, 616
HpyAV CCTTC 2 cut(s) 172, 340
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 581, 675
HpyF3I CTNAG 2 cut(s) 540, 642
HpySE526I ACGT 1 cut(s) 209
HspAI GCGC 2 cut(s) 571, 573
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 5 cut(s) 27, 257, 328, 480, 564
LmnI GCTCC 2 cut(s) 452, 592
LpnPI CCDG 3 cut(s) 22, 64, 456
Lsp1109I GCAGC 3 cut(s) 234, 401, 426
LweI GCATC 1 cut(s) 593
MaeI CTAG 3 cut(s) 59, 108, 255
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 3 cut(s) 467, 508, 621
MalI GATC 5 cut(s) 29, 259, 330, 482, 566
MboI GATC 5 cut(s) 27, 257, 328, 480, 564
MboII GAAGA 3 cut(s) 323, 389, 647
MflI RGATCY 1 cut(s) 257
MhlI GDGCHC 2 cut(s) 207, 457
MlsI TGGCCA 1 cut(s) 498
MluCI AATT 3 cut(s) 171, 353, 697
MluNI TGGCCA 1 cut(s) 498
MnlI CCTC 5 cut(s) 111, 372, 550, 586, 590
Mox20I TGGCCA 1 cut(s) 498
MscI TGGCCA 1 cut(s) 498
MseI TTAA 3 cut(s) 128, 189, 671
Msp20I TGGCCA 1 cut(s) 498
MspA1I CMGCKG 2 cut(s) 15, 439
MspCI CTTAAG 1 cut(s) 670
MspI CCGG 2 cut(s) 9, 443
MvnI CGCG 1 cut(s) 573
MwoI GCNNNNNNNGC 3 cut(s) 202, 581, 675
NdeII GATC 5 cut(s) 27, 257, 328, 480, 564
PauI GCGCGC 1 cut(s) 571
PflMI CCANNNNNTGG 1 cut(s) 296
PkrI GCNGC 5 cut(s) 14, 249, 391, 441, 668
Psp124BI GAGCTC 1 cut(s) 207
PsuI RGATCY 1 cut(s) 257
PteI GCGCGC 1 cut(s) 571
RsaI GTAC 3 cut(s) 71, 92, 491
RsaNI GTAC 3 cut(s) 70, 91, 490
SacI GAGCTC 1 cut(s) 207
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 128, 189, 671
SatI GCNGC 5 cut(s) 13, 248, 390, 440, 667
Sau3AI GATC 5 cut(s) 27, 257, 328, 480, 564
SduI GDGCHC 2 cut(s) 207, 457
SetI ASST 9 cut(s) 83, 207, 212, 342, 351, 370, 377, 495, 664
SfaNI GCATC 1 cut(s) 593
SmlI CTYRAG 6 cut(s) 269, 284, 341, 363, 554, 670
SmoI CTYRAG 6 cut(s) 269, 284, 341, 363, 554, 670
SpeI ACTAGT 1 cut(s) 107
Sse9I AATT 3 cut(s) 171, 353, 697
SsiI CCGC 4 cut(s) 13, 437, 465, 667
SspMI CTAG 3 cut(s) 59, 108, 255
SstI GAGCTC 1 cut(s) 207
StyI CCWWGG 1 cut(s) 493
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 212
TaqI TCGA 2 cut(s) 5, 658
TasI AATT 3 cut(s) 171, 353, 697
TatI WGTACW 1 cut(s) 90
TauI GCSGC 2 cut(s) 15, 669
Tru1I TTAA 3 cut(s) 128, 189, 671
Tru9I TTAA 3 cut(s) 128, 189, 671
TseI GCWGC 3 cut(s) 247, 389, 439
TspGWI ACGGA 1 cut(s) 198
Van91I CCANNNNNTGG 1 cut(s) 296
Vha464I CTTAAG 1 cut(s) 670
XapI RAATTY 1 cut(s) 353
XbaI TCTAGA 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 3 cut(s) 59, 108, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.