Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010620

Physical Location & Seq

Genomic Coordinates Reverse (-)

37735470 .. 37736326

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCCGCAATGATAATCAACGGCGAGGACGTGGATCGAATATCGGAGTTACCTGAAGCCATGAAGCTAGAAATCCTCTCACGGTTGCCTGCAAACGTTGGAGTCGATATGAGCACTGTATCCAAGACATGGAAAACCCGCCCCACATGTGGAGAAAAGAAAAAAGGAAGCTCAAGCAAGCCCTCTCCCGGCCGAACACCTCCGGCTCTCCAACAGTGTGTTCCGGTCCGGGAGGGGATGGTGGATCGCCTTGCGGCGTGGTCCCATGGTGGTGCTGCTGTCCTGGTTTTGGTGTACGGGTGCTTGAGCTCGGTGGGGGTAGATCGATCGAGATCTACTCGGTTTTACGGGTGCTATAGCGGAGGACCGGATCGAGAGATGGAGGATAGCGGTTGCATCTCGGACGAGAATGAGCGATCCGGATCTCTTCTTCTACGATCGTGGGTGAGACCGAACATAGAGCAGCGGAGGAGGCTGCGAGCATCACTTGTAGGTTCGAGTGCTTGGCGGTGGGCGGGTCTTCGATCTCGTTGTAGAGATGAGCCCACGGTGGGTGCGTCTTTACGAGATGCGGGTTCGACGTCGGCCAAGTTTTGGGACAGTCGGCTTTGTGGGGTGGGCTGTGTTGTGGCCTTCGGATGCGTTGCGGCGGCGATCCGGTGCAAGGCGACGAGGACGATGGTGCTCGGCGGCCCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.1

Weight (kDa)

9.37

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010620)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0477771 RchiOBHm_Chr3g0492151 RchiOBHm_Chr4g0410721 RchiOBHm_Chr6g0246591
rosa_laevigata	RLG00000002711
rosa_multiflora	Rmu_ssc0000134.1_g000010
rosa_roxburghii	Rroxscaffold_3G00221140 Rroxscaffold_3G00244930 Rroxscaffold_4G00301550 Rroxscaffold_4G00309800 Rroxscaffold_4G00330610 Rroxscaffold_5G00348660 Rroxscaffold_6G00402690
rosa_rugosa	Rorug04G0074400 Rorug07G0148500
rosa_samantha	Rh7AG285000 Rh7CG237300 Rh7CG304200 Rh7DG081600 Rh7DG288600
rosa_wichuraiana	Rw7G024330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	584
AccB7I	CCANNNNNTGG	2 cut(s)	129, 594
AccIII	TCCGGA	1 cut(s)	419
AclI	AACGTT	1 cut(s)	96
AclWI	GGATC	6 cut(s)	42, 252, 378, 411, 430, 649
AcoI	YGGCCR	3 cut(s)	3, 190, 585
AcuI	CTGAAG	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	581
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	7 cut(s)	129, 149, 188, 289, 551, 594, 664
AflIII	ACRYGT	1 cut(s)	146
AjiI	CACGTC	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	282
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AluBI	AGCT	3 cut(s)	67, 171, 309
AluI	AGCT	3 cut(s)	67, 171, 309
Alw21I	GWGCWC	3 cut(s)	116, 311, 687
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	6 cut(s)	42, 252, 378, 411, 430, 649
Aor13HI	TCCGGA	1 cut(s)	419
AoxI	GGCC	5 cut(s)	3, 190, 585, 630, 691
ApeKI	GCWGC	3 cut(s)	275, 463, 475
AspS9I	GGNCC	4 cut(s)	226, 261, 365, 692
AsuC2I	CCSGG	2 cut(s)	189, 230
AsuHPI	GGTGA	1 cut(s)	457
AvaII	GGWCC	3 cut(s)	226, 261, 365
BanII	GRGCYC	2 cut(s)	311, 546
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	3 cut(s)	116, 311, 687
BbvI	GCAGC	3 cut(s)	262, 462, 475
BccI	CCATC	3 cut(s)	232, 373, 673
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	284
BciVI	GTATCC	1 cut(s)	130
BcnI	CCSGG	2 cut(s)	189, 230
BcoDI	GTCTC	1 cut(s)	442
BfaI	CTAG	2 cut(s)	68, 700
BfmI	CTRYAG	1 cut(s)	355
BfuI	GTATCC	1 cut(s)	130
BglII	AGATCT	1 cut(s)	332
BisI	GCNGC	8 cut(s)	6, 255, 276, 464, 476, 648, 651, 691
BlsI	GCNGC	8 cut(s)	7, 256, 277, 465, 477, 649, 652, 692
Bme1390I	CCNGG	3 cut(s)	189, 230, 284
Bme18I	GGWCC	3 cut(s)	226, 261, 365
BmgBI	CACGTC	1 cut(s)	31
BmgT120I	GGNCC	4 cut(s)	226, 261, 365, 692
BmiI	GGNNCC	1 cut(s)	263
BmrFI	CCNGG	3 cut(s)	189, 230, 284
BmsI	GCATC	4 cut(s)	405, 491, 559, 629
BpiI	GAAGAC	1 cut(s)	512
BplI	GAGNNNNNCTC	2 cut(s)	322, 354
BpuEI	CTTGAG	2 cut(s)	157, 325
BpuMI	CCSGG	2 cut(s)	189, 230
Bsa29I	ATCGAT	1 cut(s)	325
BsaBI	GATNNNNATC	2 cut(s)	331, 421
BsaHI	GRCGYC	1 cut(s)	581
BsaI	GGTCTC	1 cut(s)	442
BsaJI	CCNNGG	2 cut(s)	265, 546
BsaWI	WCCGGW	4 cut(s)	223, 367, 419, 657
Bsc4I	CCNNNNNNNGG	7 cut(s)	129, 149, 188, 289, 551, 594, 664
Bse3DI	GCAATG	1 cut(s)	15
Bse8I	GATNNNNATC	2 cut(s)	331, 421
BseAI	TCCGGA	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	284
BseCI	ATCGAT	1 cut(s)	325
BseDI	CCNNGG	2 cut(s)	265, 546
BseGI	GGATG	2 cut(s)	243, 644
BseJI	GATNNNNATC	2 cut(s)	331, 421
BseLI	CCNNNNNNNGG	7 cut(s)	129, 149, 188, 289, 551, 594, 664
BseMI	GCAATG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	484
BseX3I	CGGCCG	1 cut(s)	190
BseXI	GCAGC	3 cut(s)	262, 462, 475
Bsh1285I	CGRYCG	3 cut(s)	193, 329, 440
BshFI	GGCC	5 cut(s)	5, 192, 587, 632, 693
BshVI	ATCGAT	1 cut(s)	325
BsiEI	CGRYCG	3 cut(s)	193, 329, 440
BsiHKAI	GWGCWC	3 cut(s)	116, 311, 687
BsiSI	CCGG	7 cut(s)	189, 203, 224, 229, 368, 420, 658
BslFI	GGGAC	2 cut(s)	247, 611
BslI	CCNNNNNNNGG	7 cut(s)	129, 149, 188, 289, 551, 594, 664
BsmAI	GTCTC	1 cut(s)	442
BsmFI	GGGAC	2 cut(s)	247, 611
BsnI	GGCC	5 cut(s)	5, 192, 587, 632, 693
Bso31I	GGTCTC	1 cut(s)	442
Bsp1286I	GDGCHC	4 cut(s)	116, 311, 546, 687
Bsp13I	TCCGGA	1 cut(s)	419
Bsp19I	CCATGG	1 cut(s)	265
BspANI	GGCC	5 cut(s)	5, 192, 587, 632, 693
BspDI	ATCGAT	1 cut(s)	325
BspEI	TCCGGA	1 cut(s)	419
BspLI	GGNNCC	1 cut(s)	263
BspPI	GGATC	6 cut(s)	42, 252, 378, 411, 430, 649
BspTNI	GGTCTC	1 cut(s)	442
BsrDI	GCAATG	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	265, 546
BssNI	GRCGYC	1 cut(s)	581
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	5 cut(s)	84, 118, 216, 550, 602
Bst6I	CTCTTC	1 cut(s)	432
BstACI	GRCGYC	1 cut(s)	581
BstC8I	GCNNGC	3 cut(s)	90, 179, 480
BstDSI	CCRYGG	2 cut(s)	265, 546
BstF5I	GGATG	2 cut(s)	243, 644
BstMAI	GTCTC	1 cut(s)	442
BstMCI	CGRYCG	3 cut(s)	193, 329, 440
BstMWI	GCNNNNNNNGC	2 cut(s)	472, 696
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	150
BstSCI	CCNGG	3 cut(s)	187, 228, 282
BstSFI	CTRYAG	1 cut(s)	355
BstV1I	GCAGC	3 cut(s)	262, 462, 475
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	2 cut(s)	332, 422
BstYI	RGATCY	2 cut(s)	332, 422
BstZI	CGGCCG	1 cut(s)	190
Bsu15I	ATCGAT	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	130
BsuRI	GGCC	5 cut(s)	5, 192, 587, 632, 693
BsuTUI	ATCGAT	1 cut(s)	325
BtgI	CCRYGG	2 cut(s)	265, 546
BtrI	CACGTC	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	243, 644
BtsIMutI	CAGTG	2 cut(s)	114, 221
Cac8I	GCNNGC	3 cut(s)	90, 179, 480
Cfr13I	GGNCC	4 cut(s)	226, 261, 365, 692
ClaI	ATCGAT	1 cut(s)	325
CpoI	CGGWCCG	1 cut(s)	226
CseI	GACGC	1 cut(s)	546
Csp6I	GTAC	1 cut(s)	295
CspI	CGGWCCG	1 cut(s)	226
CviAII	CATG	4 cut(s)	61, 129, 147, 266
CviQI	GTAC	1 cut(s)	295
EaeI	YGGCCR	3 cut(s)	3, 190, 585
EagI	CGGCCG	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Ecl136II	GAGCTC	1 cut(s)	309
EclXI	CGGCCG	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	265
Eco24I	GRGCYC	2 cut(s)	311, 546
Eco31I	GGTCTC	1 cut(s)	442
Eco47I	GGWCC	3 cut(s)	226, 261, 365
Eco52I	CGGCCG	1 cut(s)	190
Eco53kI	GAGCTC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	265
EcoT38I	GRGCYC	2 cut(s)	311, 546
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	4 cut(s)	64, 132, 150, 269
FaiI	YATR	7 cut(s)	62, 110, 130, 148, 267, 357, 458
FaqI	GGGAC	2 cut(s)	247, 611
FatI	CATG	4 cut(s)	60, 128, 146, 265
FauI	CCCGC	3 cut(s)	146, 508, 565
Fnu4HI	GCNGC	8 cut(s)	6, 255, 276, 464, 476, 648, 651, 691
FokI	GGATG	2 cut(s)	250, 651
FriOI	GRGCYC	2 cut(s)	311, 546
Fsp4HI	GCNGC	8 cut(s)	6, 255, 276, 464, 476, 648, 651, 691
FspBI	CTAG	2 cut(s)	68, 700
GluI	GCNGC	8 cut(s)	6, 255, 276, 464, 476, 648, 651, 691
HaeIII	GGCC	5 cut(s)	5, 192, 587, 632, 693
HapII	CCGG	7 cut(s)	189, 203, 224, 229, 368, 420, 658
HgaI	GACGC	1 cut(s)	546
Hin1I	GRCGYC	1 cut(s)	581
Hin1II	CATG	4 cut(s)	64, 132, 150, 269
HinfI	GANTC	1 cut(s)	102
HpaII	CCGG	7 cut(s)	189, 203, 224, 229, 368, 420, 658
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	3 cut(s)	46, 403, 638
Hpy188III	TCNNGA	3 cut(s)	330, 374, 420
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	3 cut(s)	583, 586, 673
HpyAV	CCTTC	1 cut(s)	643
HpyCH4III	ACNGT	5 cut(s)	84, 118, 216, 550, 602
HpyCH4IV	ACGT	3 cut(s)	30, 96, 581
HpyCH4V	TGCA	3 cut(s)	92, 396, 663
HpyF10VI	GCNNNNNNNGC	2 cut(s)	472, 696
HpySE526I	ACGT	3 cut(s)	30, 96, 581
Hsp92I	GRCGYC	1 cut(s)	581
Hsp92II	CATG	4 cut(s)	64, 132, 150, 269
Kpn2I	TCCGGA	1 cut(s)	419
Lsp1109I	GCAGC	3 cut(s)	262, 462, 475
LweI	GCATC	4 cut(s)	405, 491, 559, 629
MaeI	CTAG	2 cut(s)	68, 700
MaeII	ACGT	3 cut(s)	30, 96, 581
MaeIII	GTNAC	1 cut(s)	48
MboII	GAAGA	3 cut(s)	419, 422, 512
MflI	RGATCY	2 cut(s)	332, 422
MhlI	GDGCHC	4 cut(s)	116, 311, 546, 687
MlyI	GAGTC	1 cut(s)	111
MmeI	TCCRAC	2 cut(s)	79, 235
MroI	TCCGGA	1 cut(s)	419
MslI	CAYNNNNRTG	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	7 cut(s)	189, 203, 224, 229, 368, 420, 658
MspR9I	CCNGG	3 cut(s)	189, 230, 284
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	2 cut(s)	472, 696
NciI	CCSGG	2 cut(s)	189, 230
NcoI	CCATGG	1 cut(s)	265
NlaIII	CATG	4 cut(s)	64, 132, 150, 269
NlaIV	GGNNCC	1 cut(s)	263
NmeAIII	GCCGAG	1 cut(s)	666
NspI	RCATGY	1 cut(s)	150
PciI	ACATGT	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 102, 554
PflMI	CCANNNNNTGG	2 cut(s)	129, 594
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	8 cut(s)	7, 256, 277, 465, 477, 649, 652, 692
Ple19I	CGATCG	2 cut(s)	329, 440
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PscI	ACATGT	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	311
Psp1406I	AACGTT	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	263
PspPI	GGNCC	4 cut(s)	226, 261, 365, 692
PsuI	RGATCY	2 cut(s)	332, 422
PvuI	CGATCG	2 cut(s)	329, 440
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	270
Rsr2I	CGGWCCG	1 cut(s)	226
RsrII	CGGWCCG	1 cut(s)	226
SacI	GAGCTC	1 cut(s)	311
SatI	GCNGC	8 cut(s)	6, 255, 276, 464, 476, 648, 651, 691
Sau96I	GGNCC	4 cut(s)	226, 261, 365, 692
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	3 cut(s)	189, 230, 284
SduI	GDGCHC	4 cut(s)	116, 311, 546, 687
SetI	ASST	9 cut(s)	33, 55, 69, 99, 173, 202, 311, 496, 584
SfaNI	GCATC	4 cut(s)	405, 491, 559, 629
SfcI	CTRYAG	1 cut(s)	355
SinI	GGWCC	3 cut(s)	226, 261, 365
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	2 cut(s)	172, 304
SmoI	CTYRAG	2 cut(s)	172, 304
SspMI	CTAG	2 cut(s)	68, 700
SstI	GAGCTC	1 cut(s)	311
StyD4I	CCNGG	3 cut(s)	187, 228, 282
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	5 cut(s)	84, 118, 216, 550, 602
TaiI	ACGT	3 cut(s)	33, 99, 584
TaqI	TCGA	8 cut(s)	37, 105, 325, 329, 373, 497, 523, 578
TaqII	GACCGA	1 cut(s)	466
TauI	GCSGC	5 cut(s)	8, 257, 650, 653, 693
TscAI	CASTG	2 cut(s)	121, 221
TseI	GCWGC	3 cut(s)	275, 463, 475
TspDTI	ATGAA	1 cut(s)	77
TspRI	CASTG	2 cut(s)	121, 221
Van91I	CCANNNNNTGG	2 cut(s)	129, 594
VpaK11BI	GGWCC	3 cut(s)	226, 261, 365
XceI	RCATGY	1 cut(s)	150
XspI	CTAG	2 cut(s)	68, 700
ZraI	GACGTC	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.