Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004694

Physical Location & Seq

Genomic Coordinates Forward (+)

10479626 .. 10480351

Gene Structure 726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36722

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAAGAGCTGGATTCCAACAGACTACCCTCCATTCAGTTTTGTGTATAGAATCCTCACTGGGAAGAGTTGTCAAAACATATGGGATCAGCTCCTCAAGGGAAATGGCCTTTTTCCCATATGTGTTTCTGGTTCTGCAATAAGGACATTACAAATCTCCGGTTACATTCAACTGAGTGGGAATCAAATTTCAGGTCAAGTCCCTCCAAAGATTGGTAAGATGCACAATTTTAGTATGTTGCACTTGGCTTTTAATAAATTACAGGGACAACTCCCTGAAGAGATTGGACAAATGCCACTTATAGTGTTTAACCTCACTAAGAACAGTTTTTCAGGCCAAATCCCAATGGAAATCAGAAACATCAAGTGCATGCAGAATTTGGATTTATCCTGCAACAACTTTTCTGGTACCTTCCCTCGTAGCTTAAACCGATTGACTAAGCTAAGTAAGTTCAACATGTCATACAATCCTCTCATCACTGGGGTAATTCCTTCCAGTGGGCAATTGGCAACATTTGAGAAGCAGTCCTACCTTGGTGACCCCCTCCTCATCCTTCCAAAATTTATTGACAACTCCACAGATAATGAGGGTATCCTTCAGGGATTTATTGACAACTCCACAAAGCATGTTGGAAAAGTGTGGCTTAGATTAGAGCCATTTGGAATCCCACATCAGAAAAGTGAAGAGTCATCCTTGGTTTATAAGGAATGGTACCACACACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009845 GO:0009987 GO:0016020 GO:0016049 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0071944 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

241

Amino Acids

27.21

Weight (kDa)

9.13

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	55 - 155	2.1e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74360
fragaria_vesca	FvH4_4g04300 FvH4_4g04300 FvH4_5g14410
malus_domestica	MD06G1198600.v1.1 MD14G1206100.v1.1
prunus_persica	Prupe.5G199400_v2.0.a1 Prupe.5G199400_v2.0.a1
pyrus_communis	pycom06g17560
rosa_chinensis	RchiOBHm_Chr4g0394751 RchiOBHm_Chr7g0182251
rosa_laevigata	RLG00000005136 RLG00000009666
rosa_multiflora	Rmu_co8099376.1_g000001 Rmu_sc0000003.1_g000010 Rmu_sc0005356.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271380 Rroxscaffold_5G00339760 Rroxscaffold_5G00339770 Rroxscaffold_5G00339780
rosa_rugosa	Rorug03G0362000.1 Rorug05G0089900 Rorug06G0446400
rosa_samantha	Rh4BG052600 Rh4CG059400 Rh4DG051200 Rh7AG049500 Rh7BG049600 Rh7CG050900 Rh7DG048800
rosa_wichuraiana	Rw7G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	702
Acc65I	GGTACC	2 cut(s)	407, 711
AccB1I	GGYRCC	2 cut(s)	407, 711
AccB7I	CCANNNNNTGG	1 cut(s)	212
AclWI	GGATC	1 cut(s)	93
AcsI	RAATTY	3 cut(s)	186, 376, 560
AcuI	CTGAAG	2 cut(s)	297, 581
AfaI	GTAC	2 cut(s)	409, 713
AfiI	CCNNNNNNNGG	2 cut(s)	212, 497
AflIII	ACRYGT	1 cut(s)	456
AgsI	TTSAA	2 cut(s)	170, 454
AluBI	AGCT	4 cut(s)	9, 91, 423, 442
AluI	AGCT	4 cut(s)	9, 91, 423, 442
AlwI	GGATC	1 cut(s)	93
AoxI	GGCC	2 cut(s)	106, 334
ApoI	RAATTY	3 cut(s)	186, 376, 560
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
Asp718I	GGTACC	2 cut(s)	407, 711
AsuHPI	GGTGA	1 cut(s)	548
BanI	GGYRCC	2 cut(s)	407, 711
BarI	GAAGNNNNNNTAC	2 cut(s)	512, 544
BciVI	GTATCC	1 cut(s)	602
BfuI	GTATCC	1 cut(s)	602
BmiI	GGNNCC	2 cut(s)	409, 713
BmrI	ACTGGG	2 cut(s)	69, 489
BmsI	GCATC	1 cut(s)	210
BmuI	ACTGGG	2 cut(s)	69, 489
BpuEI	CTTGAG	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	532, 693
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 497
Bse1I	ACTGG	3 cut(s)	64, 484, 495
BseDI	CCNNGG	2 cut(s)	532, 693
BseGI	GGATG	2 cut(s)	549, 689
BseLI	CCNNNNNNNGG	2 cut(s)	212, 497
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	3 cut(s)	64, 484, 495
BseRI	GAGGAG	2 cut(s)	83, 536
BshFI	GGCC	2 cut(s)	108, 336
BshNI	GGYRCC	2 cut(s)	407, 711
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	2 cut(s)	185, 279
BslI	CCNNNNNNNGG	2 cut(s)	212, 497
BsmFI	GGGAC	2 cut(s)	185, 279
BsnI	GGCC	2 cut(s)	108, 336
Bsp143I	GATC	1 cut(s)	85
BspANI	GGCC	2 cut(s)	108, 336
BspCNI	CTCAG	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	409, 713
BspPI	GGATC	1 cut(s)	93
BspT107I	GGYRCC	2 cut(s)	407, 711
BsrI	ACTGG	3 cut(s)	64, 484, 495
BssECI	CCNNGG	2 cut(s)	532, 693
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	2 cut(s)	532, 693
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	3 cut(s)	59, 273, 678
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	5 cut(s)	173, 318, 438, 443, 644
BstEII	GGTNACC	1 cut(s)	536
BstF5I	GGATG	2 cut(s)	549, 689
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstNSI	RCATGY	3 cut(s)	373, 460, 629
BstPI	GGTNACC	1 cut(s)	536
BsuI	GTATCC	1 cut(s)	602
BsuRI	GGCC	2 cut(s)	108, 336
BtsCI	GGATG	2 cut(s)	549, 689
BtsIMutI	CAGTG	3 cut(s)	57, 477, 502
Cac8I	GCNNGC	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	408, 712
CviAII	CATG	3 cut(s)	370, 457, 626
CviJI	RGCY	9 cut(s)	9, 91, 108, 248, 336, 423, 442, 643, 655
CviKI_1	RGCY	9 cut(s)	9, 91, 108, 248, 336, 423, 442, 643, 655
CviQI	GTAC	2 cut(s)	408, 712
DdeI	CTNAG	5 cut(s)	173, 318, 438, 443, 644
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eam1104I	CTCTTC	3 cut(s)	59, 273, 678
EarI	CTCTTC	3 cut(s)	59, 273, 678
Eco130I	CCWWGG	2 cut(s)	532, 693
Eco57I	CTGAAG	2 cut(s)	297, 581
Eco91I	GGTNACC	1 cut(s)	536
EcoO65I	GGTNACC	1 cut(s)	536
EcoT14I	CCWWGG	2 cut(s)	532, 693
ErhI	CCWWGG	2 cut(s)	532, 693
FaeI	CATG	3 cut(s)	373, 460, 629
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FaqI	GGGAC	2 cut(s)	185, 279
FatI	CATG	3 cut(s)	369, 456, 625
FauNDI	CATATG	2 cut(s)	80, 119
FokI	GGATG	2 cut(s)	536, 676
HaeIII	GGCC	2 cut(s)	108, 336
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	3 cut(s)	373, 460, 629
HinfI	GANTC	5 cut(s)	13, 51, 181, 663, 686
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	548
Hpy188I	TCNGA	2 cut(s)	356, 675
HpyAV	CCTTC	4 cut(s)	421, 501, 563, 605
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4V	TGCA	6 cut(s)	137, 223, 241, 369, 373, 393
HpyF3I	CTNAG	5 cut(s)	173, 318, 438, 443, 644
Hsp92II	CATG	3 cut(s)	373, 460, 629
KpnI	GGTACC	2 cut(s)	411, 715
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	96
LweI	GCATC	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	161, 536
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	4 cut(s)	16, 76, 290, 695
MfeI	CAATTG	1 cut(s)	503
MluCI	AATT	7 cut(s)	186, 226, 257, 376, 486, 503, 560
MlyI	GAGTC	1 cut(s)	695
MmeI	TCCRAC	2 cut(s)	41, 610
MseI	TTAA	3 cut(s)	252, 309, 425
MspI	CCGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	503
NdeI	CATATG	2 cut(s)	80, 119
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	3 cut(s)	373, 460, 629
NlaIV	GGNNCC	2 cut(s)	409, 713
NmuCI	GTSAC	1 cut(s)	536
NspI	RCATGY	3 cut(s)	373, 460, 629
PaeI	GCATGC	1 cut(s)	373
PciI	ACATGT	1 cut(s)	456
PfeI	GAWTC	4 cut(s)	13, 51, 181, 663
PflMI	CCANNNNNTGG	1 cut(s)	212
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
PscI	ACATGT	1 cut(s)	456
PsiI	TTATAA	1 cut(s)	702
PspEI	GGTNACC	1 cut(s)	536
PspN4I	GGNNCC	2 cut(s)	409, 713
RsaI	GTAC	2 cut(s)	409, 713
RsaNI	GTAC	2 cut(s)	408, 712
SaqAI	TTAA	3 cut(s)	252, 309, 425
Sau3AI	GATC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	695
SetI	ASST	8 cut(s)	11, 93, 196, 315, 413, 425, 444, 534
SfaNI	GCATC	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SphI	GCATGC	1 cut(s)	373
Sse9I	AATT	7 cut(s)	186, 226, 257, 376, 486, 503, 560
StyI	CCWWGG	2 cut(s)	532, 693
TaaI	ACNGT	1 cut(s)	326
TasI	AATT	7 cut(s)	186, 226, 257, 376, 486, 503, 560
TfiI	GAWTC	4 cut(s)	13, 51, 181, 663
Tru1I	TTAA	3 cut(s)	252, 309, 425
Tru9I	TTAA	3 cut(s)	252, 309, 425
TscAI	CASTG	3 cut(s)	64, 484, 502
TseFI	GTSAC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	64, 484, 502
Van91I	CCANNNNNTGG	1 cut(s)	212
XapI	RAATTY	3 cut(s)	186, 376, 560
XceI	RCATGY	3 cut(s)	373, 460, 629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.