Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004694

Physical Location & Seq

Genomic Coordinates Forward (+)

11417799 .. 11419149

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG059400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCCAACTGAATTGAAGAATATAGGGTCAGATGTTGGTCCAACGTTTGAATCAAACAGCCGGGACAAGGATCAGATCATAGCTGGATCCAGGGAGTGTTTAATAATGAAGAGATGGATTCCACAGACTACCCTCCATTCAGTTTTGTGTATAGAATCCTCACTGGGAAGAGTTTTCAAAACATATGGGATCAGCTCCTTAAGGGAAATGGCCTTTTCCCATATGTGTTTTTGGTTCTGCAATAAGGACATTACAAATCTCCGATTACATTCAACTGAGTGGGAATCAAATTTCAGGTCAAGTCCCTCCAGAGATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009845 GO:0009987 GO:0016020 GO:0016049 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0071944 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

106

Amino Acids

12.29

Weight (kDa)

7.71

Isoelectric Point (pI)

66.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74360
fragaria_vesca	FvH4_4g04300 FvH4_4g04300 FvH4_5g14410
malus_domestica	MD06G1198600.v1.1 MD14G1206100.v1.1
prunus_persica	Prupe.5G199400_v2.0.a1 Prupe.5G199400_v2.0.a1
pyrus_communis	pycom06g17560
rosa_chinensis	RchiOBHm_Chr4g0394751 RchiOBHm_Chr7g0182251
rosa_laevigata	RLG00000005136 RLG00000009666
rosa_multiflora	Rmu_co8099376.1_g000001 Rmu_sc0000003.1_g000010 Rmu_sc0005356.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271380 Rroxscaffold_5G00339760 Rroxscaffold_5G00339770 Rroxscaffold_5G00339780
rosa_rugosa	Rorug03G0362000.1 Rorug05G0089900 Rorug06G0446400
rosa_samantha	Rh4BG052600 Rh4CG059400 Rh4DG051200 Rh7AG049500 Rh7BG049600 Rh7CG050900 Rh7DG048800
rosa_wichuraiana	Rw7G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	315
AclI	AACGTT	1 cut(s)	44
AclWI	GGATC	4 cut(s)	78, 81, 94, 197
AcsI	RAATTY	1 cut(s)	289
AfiI	CCNNNNNNNGG	2 cut(s)	67, 315
AflII	CTTAAG	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	16, 50, 178, 273
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	2 cut(s)	83, 195
AluI	AGCT	2 cut(s)	83, 195
AlwI	GGATC	4 cut(s)	78, 81, 94, 197
AoxI	GGCC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	289
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	86
BccI	CCATC	1 cut(s)	108
BciT130I	CCWGG	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	62
BfrI	CTTAAG	1 cut(s)	199
Bme1390I	CCNGG	2 cut(s)	62, 91
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	62, 91
BmrI	ACTGGG	1 cut(s)	173
BmuI	ACTGGG	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	292
BpuMI	CCSGG	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 315
Bse1I	ACTGG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	67, 315
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	61
BslFI	GGGAC	2 cut(s)	77, 288
BslI	CCNNNNNNNGG	2 cut(s)	67, 315
BsmFI	GGGAC	2 cut(s)	77, 288
BsnI	GGCC	1 cut(s)	212
Bsp143I	GATC	4 cut(s)	70, 75, 86, 189
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	4 cut(s)	78, 81, 94, 197
BspTI	CTTAAG	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	4 cut(s)	70, 75, 86, 189
Bst2UI	CCWGG	1 cut(s)	91
Bst6I	CTCTTC	2 cut(s)	104, 163
BstAFI	CTTAAG	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	276
BstKTI	GATC	4 cut(s)	73, 78, 89, 192
BstMBI	GATC	4 cut(s)	70, 75, 86, 189
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	2 cut(s)	60, 89
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	212
BtsIMutI	CAGTG	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	38
CviJI	RGCY	4 cut(s)	60, 83, 195, 212
CviKI_1	RGCY	4 cut(s)	60, 83, 195, 212
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	4 cut(s)	72, 77, 88, 191
DpnII	GATC	4 cut(s)	70, 75, 86, 189
Eam1104I	CTCTTC	2 cut(s)	104, 163
EarI	CTCTTC	2 cut(s)	104, 163
Eco47I	GGWCC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	89
FaiI	YATR	7 cut(s)	23, 80, 152, 184, 186, 222, 224
FaqI	GGGAC	2 cut(s)	77, 288
FauNDI	CATATG	2 cut(s)	184, 222
GsuI	CTGGAG	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	1 cut(s)	61
HinfI	GANTC	4 cut(s)	50, 118, 155, 284
HpaII	CCGG	1 cut(s)	61
Hpy188I	TCNGA	3 cut(s)	31, 75, 263
Hpy188III	TCNNGA	1 cut(s)	309
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	240
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	44
Kzo9I	GATC	4 cut(s)	70, 75, 86, 189
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	6 cut(s)	69, 74, 76, 103, 149, 280
MaeII	ACGT	1 cut(s)	44
MalI	GATC	4 cut(s)	72, 77, 88, 191
MboI	GATC	4 cut(s)	70, 75, 86, 189
MboII	GAAGA	3 cut(s)	28, 121, 180
MflI	RGATCY	1 cut(s)	86
MluCI	AATT	2 cut(s)	11, 289
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	3 cut(s)	143, 169, 316
MseI	TTAA	2 cut(s)	101, 200
MspCI	CTTAAG	1 cut(s)	199
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	2 cut(s)	62, 91
MvaI	CCWGG	1 cut(s)	91
NciI	CCSGG	1 cut(s)	62
NdeI	CATATG	2 cut(s)	184, 222
NdeII	GATC	4 cut(s)	70, 75, 86, 189
NlaIV	GGNNCC	1 cut(s)	88
PfeI	GAWTC	4 cut(s)	50, 118, 155, 284
PflMI	CCANNNNNTGG	1 cut(s)	315
Psp1406I	AACGTT	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	101, 200
Sau3AI	GATC	4 cut(s)	70, 75, 86, 189
Sau96I	GGNCC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	62, 91
SetI	ASST	4 cut(s)	47, 85, 197, 299
SgeI	CNNG	9 cut(s)	73, 74, 79, 96, 102, 103, 176, 307, 312
SinI	GGWCC	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	2 cut(s)	11, 289
StyD4I	CCNGG	2 cut(s)	60, 89
TaiI	ACGT	1 cut(s)	47
TasI	AATT	2 cut(s)	11, 289
TfiI	GAWTC	4 cut(s)	50, 118, 155, 284
Tru1I	TTAA	2 cut(s)	101, 200
Tru9I	TTAA	2 cut(s)	101, 200
TscAI	CASTG	1 cut(s)	168
TspDTI	ATGAA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	168
Van91I	CCANNNNNTGG	1 cut(s)	315
Vha464I	CTTAAG	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.