Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004694

Physical Location & Seq

Genomic Coordinates Forward (+)

8173163 .. 8174035

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00339770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCCGAGCCTCAAACACCTCAACCTGTCACATAACATTCTTGAAGGTGAGATGAAATTGCAAGGGTTTAGTCAATTAGAGGTTCTTGATTTGGCTGTCAACAGGTTTTATGGAGACATGAATATTAGATTCCCTAGAATGTGCAAAAACTTAGTAGTTGCCAATGTTTCAACGAACAGCTTTATTGGTAGGATTGAGCAGTGCTTTGATGAATGCTTGAATTTGCAGTACTTGGATTTGAGCTCAAACAGTTTTAGTGGTAATTTGTGGGTCGGGTTTACAAGGAGGGAGTTTTCGGTGTCCAAAAATTATGTCGGTGGGGCTATTTTGCCTTCTATTTTCAATGGTAGTTGTAGCTTGGTGAATTTGGAACTGTCGAAAAATGAATTTTCTGGTGAACTTGCAAAAGGGATTTCAAATTGCCAGAATTTGGTTACGTTGAATCTGCGGGAAACAAATTTACGGGGCCAATTCCATCCGAGATTGGAAACATTTCGAGTGAAGTTTCTTGTGCTGCACTCAAATTCATACACCGGCGGTGTATATTCATCCGGAATTCTTAAGCTACCAAATGTTTCTCTATTAGACCTCGGCTACAACAATTTTACAGGTTCTTTACCAGTTGAAATTGCTCAAATGCCAAGCTTGAAGTATTTGTTCCTTGCTTATAATCACTTCAATGGAACAATACCACCGAGTATGGAAATTTGTCACACCTCCAAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009845 GO:0009987 GO:0016020 GO:0016049 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0071944 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

242

Amino Acids

27.16

Weight (kDa)

8.2

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	170 - 226	4.3e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74360
fragaria_vesca	FvH4_4g04300 FvH4_4g04300 FvH4_5g14410
malus_domestica	MD06G1198600.v1.1 MD14G1206100.v1.1
prunus_persica	Prupe.5G199400_v2.0.a1 Prupe.5G199400_v2.0.a1
pyrus_communis	pycom06g17560
rosa_chinensis	RchiOBHm_Chr4g0394751 RchiOBHm_Chr7g0182251
rosa_laevigata	RLG00000005136 RLG00000009666
rosa_multiflora	Rmu_co8099376.1_g000001 Rmu_sc0000003.1_g000010 Rmu_sc0005356.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271380 Rroxscaffold_5G00339760 Rroxscaffold_5G00339770 Rroxscaffold_5G00339780
rosa_rugosa	Rorug03G0362000.1 Rorug05G0089900 Rorug06G0446400
rosa_samantha	Rh4BG052600 Rh4CG059400 Rh4DG051200 Rh7AG049500 Rh7BG049600 Rh7CG050900 Rh7DG048800
rosa_wichuraiana	Rw7G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
AccB7I	CCANNNNNTGG	1 cut(s)	430
AccIII	TCCGGA	1 cut(s)	551
AciI	CCGC	2 cut(s)	448, 537
AcsI	RAATTY	8 cut(s)	220, 364, 386, 427, 457, 523, 555, 705
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	430
AflII	CTTAAG	1 cut(s)	560
AgsI	TTSAA	9 cut(s)	44, 171, 220, 343, 417, 442, 626, 649, 679
AluBI	AGCT	5 cut(s)	180, 243, 357, 565, 645
AluI	AGCT	5 cut(s)	180, 243, 357, 565, 645
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	1 cut(s)	108
Aor13HI	TCCGGA	1 cut(s)	551
AoxI	GGCC	1 cut(s)	466
ApeKI	GCWGC	1 cut(s)	514
ApoI	RAATTY	8 cut(s)	220, 364, 386, 427, 457, 523, 555, 705
ArsI	GACNNNNNNTTYG	2 cut(s)	297, 329
Asp700I	GAANNNNTTC	1 cut(s)	492
AspS9I	GGNCC	1 cut(s)	466
AsuHPI	GGTGA	3 cut(s)	59, 373, 407
BanII	GRGCYC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	2 cut(s)	135, 727
BfrI	CTTAAG	1 cut(s)	560
BisI	GCNGC	1 cut(s)	515
BlsI	GCNGC	1 cut(s)	516
BmcAI	AGTACT	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	589
BsaWI	WCCGGW	1 cut(s)	551
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	1 cut(s)	620
BseAI	TCCGGA	1 cut(s)	551
BseDI	CCNNGG	1 cut(s)	589
BseGI	GGATG	2 cut(s)	475, 548
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseNI	ACTGG	1 cut(s)	620
BseXI	GCAGC	1 cut(s)	501
BsgI	GTGCAG	1 cut(s)	500
BshFI	GGCC	1 cut(s)	468
BsiHKAI	GWGCWC	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	534, 552
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmAI	GTCTC	1 cut(s)	108
BsmI	GAATGC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	468
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp13I	TCCGGA	1 cut(s)	551
BspACI	CCGC	2 cut(s)	448, 537
BspANI	GGCC	1 cut(s)	468
BspEI	TCCGGA	1 cut(s)	551
BspLI	GGNNCC	1 cut(s)	467
BspTI	CTTAAG	1 cut(s)	560
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	620
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	1 cut(s)	589
Bst4CI	ACNGT	2 cut(s)	251, 375
BstAFI	CTTAAG	1 cut(s)	560
BstDEI	CTNAG	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	475, 548
BstMAI	GTCTC	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	475, 548
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	1 cut(s)	118
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	245
Eco53kI	GAGCTC	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	555
EcoT38I	GRGCYC	1 cut(s)	245
FaeI	CATG	1 cut(s)	121
FaiI	YATR	8 cut(s)	33, 111, 119, 312, 529, 544, 669, 701
FatI	CATG	1 cut(s)	117
FauI	CCCGC	1 cut(s)	441
Fnu4HI	GCNGC	1 cut(s)	515
FokI	GGATG	2 cut(s)	462, 535
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	515
FspBI	CTAG	2 cut(s)	135, 727
GluI	GCNGC	1 cut(s)	515
HaeIII	GGCC	1 cut(s)	468
HapII	CCGG	2 cut(s)	534, 552
Hin1II	CATG	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	643
HinfI	GANTC	2 cut(s)	129, 442
HpaII	CCGG	2 cut(s)	534, 552
HphI	GGTGA	3 cut(s)	59, 373, 407
Hpy166II	GTNNAC	3 cut(s)	100, 279, 398
Hpy188I	TCNGA	1 cut(s)	480
Hpy188III	TCNNGA	3 cut(s)	41, 86, 552
Hpy8I	GTNNAC	3 cut(s)	100, 279, 398
HpyAV	CCTTC	2 cut(s)	38, 342
HpyCH4III	ACNGT	2 cut(s)	251, 375
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	5 cut(s)	61, 144, 226, 404, 517
HpyF3I	CTNAG	1 cut(s)	151
HpySE526I	ACGT	1 cut(s)	437
Hsp92II	CATG	1 cut(s)	121
Kpn2I	TCCGGA	1 cut(s)	551
LpnPI	CCDG	8 cut(s)	38, 88, 378, 437, 547, 565, 594, 633
Lsp1109I	GCAGC	1 cut(s)	501
MaeI	CTAG	2 cut(s)	135, 727
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	3 cut(s)	27, 433, 710
MhlI	GDGCHC	1 cut(s)	245
MnlI	CCTC	6 cut(s)	20, 29, 73, 279, 599, 727
MroI	TCCGGA	1 cut(s)	551
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	1 cut(s)	678
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	2 cut(s)	534, 552
Mva1269I	GAATGC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	467
NmeAIII	GCCGAG	2 cut(s)	30, 570
NmuCI	GTSAC	2 cut(s)	27, 710
PctI	GAATGC	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	129, 442
PflMI	CCANNNNNTGG	1 cut(s)	430
PkrI	GCNGC	1 cut(s)	516
PsiI	TTATAA	1 cut(s)	669
Psp124BI	GAGCTC	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	467
PspPI	GGNCC	1 cut(s)	466
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	678
SacI	GAGCTC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	1 cut(s)	515
Sau96I	GGNCC	1 cut(s)	466
ScaI	AGTACT	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	245
SgrAI	CRCCGGYG	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	678
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SsiI	CCGC	2 cut(s)	448, 537
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	2 cut(s)	135, 727
SstI	GAGCTC	1 cut(s)	245
TaaI	ACNGT	2 cut(s)	251, 375
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	2 cut(s)	377, 496
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	129, 442
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	1 cut(s)	206
TseFI	GTSAC	2 cut(s)	27, 710
TseI	GCWGC	1 cut(s)	514
Tsp45I	GTSAC	2 cut(s)	27, 710
TspDTI	ATGAA	6 cut(s)	68, 134, 225, 399, 516, 537
TspRI	CASTG	1 cut(s)	206
Van91I	CCANNNNNTGG	1 cut(s)	430
Vha464I	CTTAAG	1 cut(s)	560
XapI	RAATTY	8 cut(s)	220, 364, 386, 427, 457, 523, 555, 705
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	2 cut(s)	135, 727
ZrmI	AGTACT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.