Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8099376.1

Orthogroup ID

OG0004694

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 336

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8099376.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

agtgggcaattggcaacatttgagaagcagtcctaccttggtgaccccctcctcatccttccaaaatttattgacaattccacagataatgagggtatccttctgagatttattgacaactccacagagcatgaggatgaggttataagacatggattgtacatcagcatgggacttggatttgtggttggattttggggagtttgtgggagcttgattttcatcaggtcatggagatactcatactatggtttcttgaatcttctacatgactggctttatgtgagggtggctttgatcaggcagaaactaaaggacatgcttagaagatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009845 GO:0009987 GO:0016020 GO:0016049 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0071944 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

111

Amino Acids

12.95

Weight (kDa)

6.79

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74360
fragaria_vesca	FvH4_4g04300 FvH4_4g04300 FvH4_5g14410
malus_domestica	MD06G1198600.v1.1 MD14G1206100.v1.1
prunus_persica	Prupe.5G199400_v2.0.a1 Prupe.5G199400_v2.0.a1
pyrus_communis	pycom06g17560
rosa_chinensis	RchiOBHm_Chr4g0394751 RchiOBHm_Chr7g0182251
rosa_laevigata	RLG00000005136 RLG00000009666
rosa_multiflora	Rmu_co8099376.1_g000001 Rmu_sc0000003.1_g000010 Rmu_sc0005356.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271380 Rroxscaffold_5G00339760 Rroxscaffold_5G00339770 Rroxscaffold_5G00339780
rosa_rugosa	Rorug03G0362000.1 Rorug05G0089900 Rorug06G0446400
rosa_samantha	Rh4BG052600 Rh4CG059400 Rh4DG051200 Rh7AG049500 Rh7BG049600 Rh7CG050900 Rh7DG048800
rosa_wichuraiana	Rw7G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	65
AfaI	GTAC	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
ApoI	RAATTY	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	17, 49
BciVI	GTATCC	1 cut(s)	107
BclI	TGATCA	1 cut(s)	297
BfuI	GTATCC	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	278
Bse8I	GATNNNNATC	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	2 cut(s)	54, 142
BseJI	GATNNNNATC	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	186
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	297, 329
BspCNI	CTCAG	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	2 cut(s)	297, 329
BssT1I	CCWWGG	1 cut(s)	37
BstAUI	TGTACA	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	104, 323
BstEII	GGTNACC	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	54, 142
BstKTI	GATC	2 cut(s)	300, 332
BstMBI	GATC	2 cut(s)	297, 329
BstNSI	RCATGY	1 cut(s)	322
BstPI	GGTNACC	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	54, 142
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	6 cut(s)	131, 152, 169, 231, 269, 319
CviJI	RGCY	3 cut(s)	213, 277, 293
CviKI_1	RGCY	3 cut(s)	213, 277, 293
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	2 cut(s)	104, 323
DpnI	GATC	2 cut(s)	299, 331
DpnII	GATC	2 cut(s)	297, 329
Eco130I	CCWWGG	1 cut(s)	37
Eco91I	GGTNACC	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	6 cut(s)	134, 155, 172, 234, 272, 322
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	6 cut(s)	130, 151, 168, 230, 268, 318
FbaI	TGATCA	1 cut(s)	297
FokI	GGATG	2 cut(s)	41, 149
Hin1II	CATG	6 cut(s)	134, 155, 172, 234, 272, 322
HinfI	GANTC	1 cut(s)	259
HphI	GGTGA	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	68, 110
HpyF3I	CTNAG	2 cut(s)	104, 323
Hsp92II	CATG	6 cut(s)	134, 155, 172, 234, 272, 322
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	297, 329
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	3 cut(s)	211, 259, 286
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	299, 331
MboI	GATC	2 cut(s)	297, 329
MboII	GAAGA	1 cut(s)	254
MfeI	CAATTG	1 cut(s)	8
MluCI	AATT	3 cut(s)	8, 65, 76
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	6 cut(s)	59, 62, 85, 127, 133, 279
MslI	CAYNNNNRTG	2 cut(s)	135, 167
MunI	CAATTG	1 cut(s)	8
NdeII	GATC	2 cut(s)	297, 329
NlaIII	CATG	6 cut(s)	134, 155, 172, 234, 272, 322
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	259
PsiI	TTATAA	1 cut(s)	146
PspEI	GGTNACC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	2 cut(s)	135, 167
Sau3AI	GATC	2 cut(s)	297, 329
SetI	ASST	4 cut(s)	39, 144, 215, 230
SmiMI	CAYNNNNRTG	2 cut(s)	135, 167
Sse9I	AATT	3 cut(s)	8, 65, 76
StyI	CCWWGG	1 cut(s)	37
TasI	AATT	3 cut(s)	8, 65, 76
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	211
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.