Rroxscaffold_5G00339780
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
8174766 .. 8175080
315 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00339780.1

Sequence Viewer

Length: 315 bp
ATGTCATACAATCCTCTCATCACCGGGATAATTCTTTCCGGTGGGCAATTGGCAACATTTGAGAAGCAGTCCTACCTTGGTGACCACCTCCTCATCCTTCCAAATTTTATTGACAACTCCACAGATAATGAGGGTATCCTTCCGAGATTTATTGACAACTCCACAGAGCATGAGGATGAGGTTATAAGACATGGATTGTACATCAGCATGGGACTTGGATTTGTGGTTGGATTTTGGGGAGTTTGTGGCCGGGAGCTTGATTTCCATCGAGTTATGGAGATACTCATACTATGGTTTCTTGAATCTTCTACATGA

Protein Analysis

104

Amino Acids

11.78

Weight (kDa)

4.54

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 1 cut(s) 103
AfaI GTAC 1 cut(s) 200
AgsI TTSAA 1 cut(s) 302
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
AoxI GGCC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 103
AsuC2I CCSGG 2 cut(s) 25, 251
AsuHPI GGTGA 2 cut(s) 13, 92
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BccI CCATC 1 cut(s) 273
BciVI GTATCC 1 cut(s) 146
BcnI CCSGG 2 cut(s) 25, 251
BfuI GTATCC 1 cut(s) 146
Bme1390I CCNGG 2 cut(s) 25, 251
BmrFI CCNGG 2 cut(s) 25, 251
BpuMI CCSGG 2 cut(s) 25, 251
BsaBI GATNNNNATC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 76
BsaWI WCCGGW 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 2 cut(s) 93, 181
BseJI GATNNNNATC 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 80
BshFI GGCC 1 cut(s) 249
BsiSI CCGG 3 cut(s) 24, 39, 250
BslFI GGGAC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 225
BsnI GGCC 1 cut(s) 249
Bsp1407I TGTACA 1 cut(s) 198
BspANI GGCC 1 cut(s) 249
BsrGI TGTACA 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 76
BssT1I CCWWGG 1 cut(s) 76
BstAUI TGTACA 1 cut(s) 198
BstEII GGTNACC 1 cut(s) 80
BstF5I GGATG 2 cut(s) 93, 181
BstPI GGTNACC 1 cut(s) 80
BstSCI CCNGG 2 cut(s) 23, 249
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 2 cut(s) 93, 181
Csp6I GTAC 1 cut(s) 199
CviAII CATG 4 cut(s) 170, 191, 208, 312
CviJI RGCY 2 cut(s) 249, 256
CviKI_1 RGCY 2 cut(s) 249, 256
CviQI GTAC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 76
Eco91I GGTNACC 1 cut(s) 80
EcoO65I GGTNACC 1 cut(s) 80
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 4 cut(s) 173, 194, 211, 315
FaiI YATR 9 cut(s) 7, 171, 185, 192, 209, 275, 287, 292, 313
FaqI GGGAC 1 cut(s) 225
FatI CATG 4 cut(s) 169, 190, 207, 311
FokI GGATG 2 cut(s) 80, 188
HaeIII GGCC 1 cut(s) 249
HapII CCGG 3 cut(s) 24, 39, 250
Hin1II CATG 4 cut(s) 173, 194, 211, 315
HinfI GANTC 1 cut(s) 302
HpaII CCGG 3 cut(s) 24, 39, 250
HphI GGTGA 2 cut(s) 13, 92
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 299
HpyAV CCTTC 2 cut(s) 107, 149
Hsp92II CATG 4 cut(s) 173, 194, 211, 315
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 3 cut(s) 37, 52, 263
MaeIII GTNAC 1 cut(s) 80
MboII GAAGA 1 cut(s) 297
MfeI CAATTG 1 cut(s) 47
MluCI AATT 3 cut(s) 30, 47, 103
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 6 cut(s) 24, 98, 101, 124, 166, 172
MslI CAYNNNNRTG 2 cut(s) 174, 206
MspI CCGG 3 cut(s) 24, 39, 250
MspR9I CCNGG 2 cut(s) 25, 251
MunI CAATTG 1 cut(s) 47
NciI CCSGG 2 cut(s) 25, 251
NlaIII CATG 4 cut(s) 173, 194, 211, 315
NmuCI GTSAC 1 cut(s) 80
PfeI GAWTC 1 cut(s) 302
PsiI TTATAA 1 cut(s) 185
PspEI GGTNACC 1 cut(s) 80
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 2 cut(s) 174, 206
ScrFI CCNGG 2 cut(s) 25, 251
SetI ASST 4 cut(s) 78, 90, 183, 258
SmiMI CAYNNNNRTG 2 cut(s) 174, 206
Sse9I AATT 3 cut(s) 30, 47, 103
StyD4I CCNGG 2 cut(s) 23, 249
StyI CCWWGG 1 cut(s) 76
TaqI TCGA 1 cut(s) 268
TasI AATT 3 cut(s) 30, 47, 103
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 1 cut(s) 302
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
XapI RAATTY 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.