Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004694

Physical Location & Seq

Genomic Coordinates Forward (+)

8170024 .. 8170698

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00339760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTACTCAAATTCGAAAGCTGATTCATGGCGCTTAAGGTTGTGCTCGTCACTCGTAGTCATCACTATGATCACAGTTGATGTAGGACATGGAGATTCGCTAGACAGAGACATGGAGGTCCTGCTGAGTCTTAAGGCATTTATGCAAGAACATAATAGAATAAACCAAGGCCAATACTTAAAATGGAACCAGAGCCACAACCCATTTGAATGGCCTAGAATTTCATGCAATGATGACAATAGAGTCAGTGCAGTTGATCTCTCCGATAGCAAAATCTCCAGTGAGGTTTCCGGAAACTTCTCTGCCCCGACAGCACTGTCTCACCTTGATCTATCCATGAACACTTTGGGTGGAGATATTCGTAATACCCGCAAAATTTCATTTTCGTCTAGTGAAATTGTGCGGAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009845 GO:0009987 GO:0016020 GO:0016049 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0071944 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

137

Amino Acids

15.45

Weight (kDa)

6.06

Isoelectric Point (pI)

27.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74360
fragaria_vesca	FvH4_4g04300 FvH4_4g04300 FvH4_5g14410
malus_domestica	MD06G1198600.v1.1 MD14G1206100.v1.1
prunus_persica	Prupe.5G199400_v2.0.a1 Prupe.5G199400_v2.0.a1
pyrus_communis	pycom06g17560
rosa_chinensis	RchiOBHm_Chr4g0394751 RchiOBHm_Chr7g0182251
rosa_laevigata	RLG00000005136 RLG00000009666
rosa_multiflora	Rmu_co8099376.1_g000001 Rmu_sc0000003.1_g000010 Rmu_sc0005356.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271380 Rroxscaffold_5G00339760 Rroxscaffold_5G00339770 Rroxscaffold_5G00339780
rosa_rugosa	Rorug03G0362000.1 Rorug05G0089900 Rorug06G0446400
rosa_samantha	Rh4BG052600 Rh4CG059400 Rh4DG051200 Rh7AG049500 Rh7BG049600 Rh7CG050900 Rh7DG048800
rosa_wichuraiana	Rw7G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	116, 242, 316
AccIII	TCCGGA	1 cut(s)	290
AciI	CCGC	2 cut(s)	370, 403
AcsI	RAATTY	3 cut(s)	10, 219, 375
AfaI	GTAC	1 cut(s)	5
AflII	CTTAAG	2 cut(s)	34, 131
AgsI	TTSAA	1 cut(s)	209
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	2 cut(s)	102, 324
Aor13HI	TCCGGA	1 cut(s)	290
AoxI	GGCC	2 cut(s)	169, 212
ApoI	RAATTY	3 cut(s)	10, 219, 375
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	314
AsuII	TTCGAA	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	47
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	102, 324
BfaI	CTAG	3 cut(s)	101, 216, 390
BfoI	RGCGCY	1 cut(s)	34
BfrI	CTTAAG	2 cut(s)	34, 131
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	188
BpmI	CTGGAG	1 cut(s)	262
Bpu14I	TTCGAA	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	235
BseAI	TCCGGA	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	279
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	2 cut(s)	171, 214
BsiHKAI	GWGCWC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	291
BsmAI	GTCTC	2 cut(s)	102, 324
BsnI	GGCC	2 cut(s)	171, 214
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp13I	TCCGGA	1 cut(s)	290
Bsp143I	GATC	3 cut(s)	69, 256, 328
BspACI	CCGC	2 cut(s)	370, 403
BspANI	GGCC	2 cut(s)	171, 214
BspCNI	CTCAG	1 cut(s)	117
BspEI	TCCGGA	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	188
BspT104I	TTCGAA	1 cut(s)	14
BspTI	CTTAAG	2 cut(s)	34, 131
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	3 cut(s)	69, 256, 328
BssT1I	CCWWGG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	76, 318
BstAFI	CTTAAG	2 cut(s)	34, 131
BstBI	TTCGAA	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	3 cut(s)	72, 259, 331
BstMAI	GTCTC	2 cut(s)	102, 324
BstMBI	GATC	3 cut(s)	69, 256, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstXI	CCANNNNNNTGG	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	171, 214
BtsIMutI	CAGTG	3 cut(s)	253, 286, 314
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	5 cut(s)	27, 89, 112, 225, 337
CviJI	RGCY	4 cut(s)	20, 171, 195, 214
CviKI_1	RGCY	4 cut(s)	20, 171, 195, 214
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	3 cut(s)	71, 258, 330
DpnII	GATC	3 cut(s)	69, 256, 328
DrdI	GACNNNNNNGTC	3 cut(s)	116, 242, 316
DseDI	GACNNNNNNGTC	3 cut(s)	116, 242, 316
Eco130I	CCWWGG	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	5 cut(s)	30, 92, 115, 228, 340
FaiI	YATR	8 cut(s)	28, 68, 90, 113, 143, 153, 226, 338
FatI	CATG	5 cut(s)	26, 88, 111, 224, 336
FauI	CCCGC	1 cut(s)	377
FbaI	TGATCA	1 cut(s)	69
FspBI	CTAG	3 cut(s)	101, 216, 390
GlaI	GCGC	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	262
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	2 cut(s)	171, 214
HapII	CCGG	1 cut(s)	291
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	5 cut(s)	30, 92, 115, 228, 340
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	4 cut(s)	23, 95, 127, 243
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	314
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	291
HpyCH4III	ACNGT	2 cut(s)	76, 318
HpyCH4V	TGCA	3 cut(s)	145, 228, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	5 cut(s)	30, 92, 115, 228, 340
HspAI	GCGC	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	290
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	3 cut(s)	69, 256, 328
LpnPI	CCDG	4 cut(s)	134, 203, 292, 304
MaeI	CTAG	3 cut(s)	101, 216, 390
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	3 cut(s)	71, 258, 330
MboI	GATC	3 cut(s)	69, 256, 328
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	4 cut(s)	10, 219, 375, 396
MlyI	GAGTC	2 cut(s)	136, 252
MnlI	CCTC	2 cut(s)	109, 277
MroI	TCCGGA	1 cut(s)	290
MseI	TTAA	3 cut(s)	35, 132, 179
MslI	CAYNNNNRTG	2 cut(s)	65, 208
MspCI	CTTAAG	2 cut(s)	34, 131
MspI	CCGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	3 cut(s)	69, 256, 328
NlaIII	CATG	5 cut(s)	30, 92, 115, 228, 340
NlaIV	GGNNCC	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	48
NspV	TTCGAA	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	23, 95
PleI	GAGTC	2 cut(s)	135, 251
PpsI	GAGTC	2 cut(s)	135, 251
PpuMI	RGGWCCY	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	65, 208
SaqAI	TTAA	3 cut(s)	35, 132, 179
Sau3AI	GATC	3 cut(s)	69, 256, 328
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	2 cut(s)	136, 252
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	5 cut(s)	22, 41, 120, 288, 327
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	2 cut(s)	65, 208
SmlI	CTYRAG	2 cut(s)	34, 131
SmoI	CTYRAG	2 cut(s)	34, 131
Sse9I	AATT	4 cut(s)	10, 219, 375, 396
SsiI	CCGC	2 cut(s)	370, 403
SspMI	CTAG	3 cut(s)	101, 216, 390
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	2 cut(s)	76, 318
TaqI	TCGA	1 cut(s)	14
TasI	AATT	4 cut(s)	10, 219, 375, 396
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	23, 95
Tru1I	TTAA	3 cut(s)	35, 132, 179
Tru9I	TTAA	3 cut(s)	35, 132, 179
TscAI	CASTG	3 cut(s)	253, 286, 321
TseFI	GTSAC	1 cut(s)	48
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	4 cut(s)	15, 213, 353, 369
TspRI	CASTG	3 cut(s)	253, 286, 321
Vha464I	CTTAAG	2 cut(s)	34, 131
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	3 cut(s)	10, 219, 375
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XspI	CTAG	3 cut(s)	101, 216, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.