Rh4DG051200
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
8129313 .. 8132434
3122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG051200.1

Sequence Viewer

Length: 1908 bp
ATGATCACAGTTGATGTAGTACATGGAGATTCGCTAGACACAGACATGGAGGTCCTGCTAAGTCTTAAGGAATTTATGCAACAACATAATAGAATAAACCAAGGCCAATACTTAAAATGGAACCAGAGCAACAACCCATGTGAATGGCCTAGAATTTCATGCAATGATGACAATAGAGTCAGTGCAATTGATCTCTCCAATAGCAAAATCTCCGGTGAGGTTTTCGGAAACTTCTCTGCCCTGACAGCACTGTCTCACCTTGACCTATCCATGAACACTTTGGGTGGAGCTATTCCAGAGGACCTGAGTCAATGCCAGAGCCTCAAACACCTCAACCTGTCACATAACATTCTTGAAGGTGAGATGAAATTGCAAGGGTTTAGTCAATTAGAGGTTCTTGATTTGGCTGTCAACAGGTTTTATGGGGACATGAATATTAGATTCCCTGGAATTTGCAAAAACTTAGTAGTTGCCAATGTTTCAACGAACGGCTTTACTGGTAGGATTGATCAGTGCTTTGATGAATGCTTGAATTTGCAGTACTTGGATTTGAGCTCAAACAGTTTTAGTGGTGATTTGTGGGTCGGGTTTACAAGGCTTAGGGAGTTTTCAGTGTCCGAAAATTATCTCAGTGGGGCTATTTTGCCTTCTATTTTCAATGGTAGTTGTAGCTTGGTGAATTTGGAACTGTCAGAAAATGAATTTTCTGGTGAACTTGCAAAAGGGATTTCAAATTGCCAGAATTTGGTTACATTGAATCTCTGGGGAAACAAATTTACAGGGCCAATTCCATCTGAGATTGGAAACATTTCGAGTCTCAAATCATTGTTCTTGGGAAATAATAGTTTTTCTAGAGTGATCCCAGAATCCCTTCTGGATTTGAGCAGCTTGGTGTCCTTGGATTTAAGCAGAAACAATTTTGGAGGGGATATACAAGATATATTTGGAAGATTCACGCAGGTGAAGTTTCTTGTGCTGCACTCAAATTCATACACTGGCGGTGTATATTCATCTGGAATTCTTAAGCTACCAAATGTTTCTCTATTAGACCTCAGCTACAACAATTTTACAGGTTCTTTACCAGTTGAAATTGCTCAAATGCCAAGCTTGAAGTATTTGTTCCTTGCTTATAATCACTTCAATGGAACAATACCACCAGAGTATGGAAATTTGTCACACCTCCAAGCACTAGACCTTTCCTTCAACAGTCTATCTGGGTCAATCCCCACCATAGGAAACTTGAAACCTCTTATGTTTTTTATGCTTGCAAATAATTTGCTAACTGGTCCTATTCCCAAGGAGTTGGGGAATTGTACTAGCTTGTTGTGGCTGAACCTTTCAAACATCAAGCTTAGTGGGACAATCCCAACTGAATTGAAGAATATAGGGTCAGATGTTGGTCCAACATTTGAATCAAACAGTCGGGACAAGGATCAGATCATAGCTGGATCCAGGGAGTGCTTAGTAATGAAGAGATGGATTCCAGCAGACTACCCCCCATTCAATTTTGTGTATAGAATCCTCACTGGGAAGAGTTGTCAAAACATATGGGATCAGCTCCTCAAGGGAAATGGCCTTTTTCCCATATGTGTTTCTGGTTCTGCAATAAGGACATTACAAATCTCCGGTTACATTCAACTGAGTGGGAATCAACTTTCAGGTCAAGTCCCTCCAGAGATTGGTAAGATGCACAATTTTAGTATGTTGCACTTGGCTTTTAATAAATTAAAGGGACAACTCCCTGAAGAGATTGGACAAATGCCACTTATAGTGTTTAACCTCACTAAGAACAGTTTTTTCGGGCCAAATCCCGATGGAAATCGGAAACATCAAGTGCATGCAGAATTTGGATTTGTCCTACAACAACTTTTCTGGTACCTTCCCTCGCAGCTTAAACCGATTGACTGA

Protein Analysis

635

Amino Acids

70.33

Weight (kDa)

5.52

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 61 - 116 2e-06 Leucine rich repeat
LRR_8 PF13855 248 - 307 6.5e-08 Leucine rich repeat
LRR_8 PF13855 322 - 380 4.8e-07 Leucine rich repeat
LRR_14 PF23598 349 - 461 9e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1131
AarI CACCTGC 1 cut(s) 949
AasI GACNNNNNNGTC 3 cut(s) 50, 176, 250
Acc36I ACCTGC 1 cut(s) 949
Acc65I GGTACC 1 cut(s) 1875
AccB1I GGYRCC 1 cut(s) 1875
AccB7I CCANNNNNTGG 3 cut(s) 745, 1163, 1679
AciI CCGC 1 cut(s) 999
AclWI GGATC 5 cut(s) 853, 1440, 1443, 1456, 1560
AcuI CTGAAG 1 cut(s) 1764
AfaI GTAC 4 cut(s) 21, 542, 1315, 1877
AfiI CCNNNNNNNGG 4 cut(s) 745, 1163, 1232, 1679
AflII CTTAAG 2 cut(s) 65, 1022
AjnI CCWGG 2 cut(s) 445, 1451
AleI CACNNNNGTG 1 cut(s) 959
Alw21I GWGCWC 1 cut(s) 557
Alw26I GTCTC 2 cut(s) 258, 821
AlwI GGATC 5 cut(s) 853, 1440, 1443, 1456, 1560
AoxI GGCC 5 cut(s) 103, 146, 782, 1573, 1802
ApeKI GCWGC 3 cut(s) 885, 976, 1888
Asp700I GAANNNNTTC 2 cut(s) 808, 870
Asp718I GGTACC 1 cut(s) 1875
AspS9I GGNCC 6 cut(s) 52, 301, 782, 1286, 1400, 1802
AsuHPI GGTGA 7 cut(s) 227, 248, 371, 584, 688, 722, 973
AvaII GGWCC 4 cut(s) 52, 301, 1286, 1400
BamHI GGATCC 1 cut(s) 1448
BanI GGYRCC 1 cut(s) 1875
BanII GRGCYC 1 cut(s) 557
Bbv12I GWGCWC 1 cut(s) 557
BbvCI CCTCAGC 1 cut(s) 1052
BbvI GCAGC 3 cut(s) 897, 963, 1900
BccI CCATC 3 cut(s) 799, 1470, 1808
BceAI ACGGC 1 cut(s) 505
BciT130I CCWGG 2 cut(s) 447, 1453
BclI TGATCA 2 cut(s) 3, 508
BcoDI GTCTC 2 cut(s) 258, 821
BfaI CTAG 5 cut(s) 35, 150, 852, 1190, 1317
BfrI CTTAAG 2 cut(s) 65, 1022
BfuAI ACCTGC 1 cut(s) 949
BisI GCNGC 3 cut(s) 886, 977, 1889
BlsI GCNGC 3 cut(s) 887, 978, 1890
BmcAI AGTACT 1 cut(s) 542
Bme1390I CCNGG 2 cut(s) 447, 1453
Bme18I GGWCC 4 cut(s) 52, 301, 1286, 1400
BmgT120I GGNCC 6 cut(s) 52, 301, 782, 1286, 1400, 1802
BmiI GGNNCC 3 cut(s) 122, 1450, 1877
BmrFI CCNGG 2 cut(s) 447, 1453
BmrI ACTGGG 1 cut(s) 1536
BmsI GCATC 1 cut(s) 1677
BmuI ACTGGG 1 cut(s) 1536
BoxI GACNNNNGTC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 1656
Bpu10I CCTNAGC 2 cut(s) 599, 1052
BpuEI CTTGAG 1 cut(s) 1547
BsaBI GATNNNNATC 1 cut(s) 1818
BsaJI CCNNGG 5 cut(s) 100, 445, 897, 1296, 1452
BsaWI WCCGGW 2 cut(s) 212, 1625
Bsc4I CCNNNNNNNGG 4 cut(s) 745, 1163, 1232, 1679
Bse1I ACTGG 5 cut(s) 502, 1000, 1082, 1288, 1531
Bse3DI GCAATG 1 cut(s) 169
Bse8I GATNNNNATC 1 cut(s) 1818
BseBI CCWGG 2 cut(s) 447, 1453
BseDI CCNNGG 5 cut(s) 100, 445, 897, 1296, 1452
BseJI GATNNNNATC 1 cut(s) 1818
BseLI CCNNNNNNNGG 4 cut(s) 745, 1163, 1232, 1679
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 5 cut(s) 296, 643, 786, 1066, 1631
BseNI ACTGG 5 cut(s) 502, 1000, 1082, 1288, 1531
BseRI GAGGAG 1 cut(s) 1550
BseXI GCAGC 3 cut(s) 897, 963, 1900
BsgI GTGCAG 1 cut(s) 962
BshFI GGCC 5 cut(s) 105, 148, 784, 1575, 1804
BshNI GGYRCC 1 cut(s) 1875
BsiHKAI GWGCWC 1 cut(s) 557
BsiSI CCGG 2 cut(s) 213, 1626
BslFI GGGAC 5 cut(s) 440, 1372, 1439, 1652, 1746
BslI CCNNNNNNNGG 4 cut(s) 745, 1163, 1232, 1679
BsmAI GTCTC 2 cut(s) 258, 821
BsmFI GGGAC 5 cut(s) 440, 1372, 1439, 1652, 1746
BsmI GAATGC 1 cut(s) 530
BsnI GGCC 5 cut(s) 105, 148, 784, 1575, 1804
Bsp1286I GDGCHC 1 cut(s) 557
Bsp143I GATC 8 cut(s) 3, 190, 508, 858, 1432, 1437, 1448, 1552
BspACI CCGC 1 cut(s) 999
BspANI GGCC 5 cut(s) 105, 148, 784, 1575, 1804
BspCNI CTCAG 5 cut(s) 297, 642, 787, 1065, 1632
BspLI GGNNCC 3 cut(s) 122, 1450, 1877
BspMI ACCTGC 1 cut(s) 949
BspPI GGATC 5 cut(s) 853, 1440, 1443, 1456, 1560
BspT107I GGYRCC 1 cut(s) 1875
BspTI CTTAAG 2 cut(s) 65, 1022
BsrDI GCAATG 1 cut(s) 169
BsrI ACTGG 5 cut(s) 502, 1000, 1082, 1288, 1531
BssECI CCNNGG 5 cut(s) 100, 445, 897, 1296, 1452
BssMI GATC 8 cut(s) 3, 190, 508, 858, 1432, 1437, 1448, 1552
BssT1I CCWWGG 3 cut(s) 100, 897, 1296
Bst2UI CCWGG 2 cut(s) 447, 1453
Bst4CI ACNGT 7 cut(s) 10, 252, 563, 690, 1208, 1421, 1793
Bst6I CTCTTC 3 cut(s) 1466, 1526, 1740
BstAFI CTTAAG 2 cut(s) 65, 1022
BstC8I GCNNGC 2 cut(s) 1266, 1839
BstKTI GATC 8 cut(s) 6, 193, 511, 861, 1435, 1440, 1451, 1555
BstMAI GTCTC 2 cut(s) 258, 821
BstMBI GATC 8 cut(s) 3, 190, 508, 858, 1432, 1437, 1448, 1552
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 2 cut(s) 447, 1453
BstNSI RCATGY 1 cut(s) 1841
BstPAI GACNNNNGTC 1 cut(s) 306
BstSCI CCNGG 2 cut(s) 445, 1451
BstV1I GCAGC 3 cut(s) 897, 963, 1900
BstX2I RGATCY 1 cut(s) 1448
BstXI CCANNNNNNTGG 2 cut(s) 144, 1303
BstYI RGATCY 1 cut(s) 1448
BsuRI GGCC 5 cut(s) 105, 148, 784, 1575, 1804
BtsIMutI CAGTG 7 cut(s) 187, 248, 518, 618, 637, 993, 1524
BveI ACCTGC 1 cut(s) 949
Cac8I GCNNGC 2 cut(s) 1266, 1839
Cfr13I GGNCC 6 cut(s) 52, 301, 782, 1286, 1400, 1802
Csp6I GTAC 4 cut(s) 20, 541, 1314, 1876
CspCI CAANNNNNGTGG 2 cut(s) 1336, 1371
CviAII CATG 7 cut(s) 23, 46, 138, 159, 271, 430, 1838
CviQI GTAC 4 cut(s) 20, 541, 1314, 1876
DpnI GATC 8 cut(s) 5, 192, 510, 860, 1434, 1439, 1450, 1554
DpnII GATC 8 cut(s) 3, 190, 508, 858, 1432, 1437, 1448, 1552
DrdI GACNNNNNNGTC 3 cut(s) 50, 176, 250
DseDI GACNNNNNNGTC 3 cut(s) 50, 176, 250
Eam1104I CTCTTC 3 cut(s) 1466, 1526, 1740
EarI CTCTTC 3 cut(s) 1466, 1526, 1740
Ecl136II GAGCTC 1 cut(s) 555
Eco130I CCWWGG 3 cut(s) 100, 897, 1296
Eco24I GRGCYC 1 cut(s) 557
Eco47I GGWCC 4 cut(s) 52, 301, 1286, 1400
Eco53kI GAGCTC 1 cut(s) 555
Eco57I CTGAAG 1 cut(s) 1764
EcoICRI GAGCTC 1 cut(s) 555
EcoO109I RGGNCCY 2 cut(s) 52, 301
EcoRI GAATTC 1 cut(s) 1017
EcoRII CCWGG 2 cut(s) 445, 1451
EcoT14I CCWWGG 3 cut(s) 100, 897, 1296
EcoT38I GRGCYC 1 cut(s) 557
ErhI CCWWGG 3 cut(s) 100, 897, 1296
FaeI CATG 7 cut(s) 26, 49, 141, 162, 274, 433, 1841
FaqI GGGAC 5 cut(s) 440, 1372, 1439, 1652, 1746
FatI CATG 7 cut(s) 22, 45, 137, 158, 270, 429, 1837
FauNDI CATATG 2 cut(s) 1547, 1586
FbaI TGATCA 2 cut(s) 3, 508
Fnu4HI GCNGC 3 cut(s) 886, 977, 1889
FriOI GRGCYC 1 cut(s) 557
Fsp4HI GCNGC 3 cut(s) 886, 977, 1889
FspBI CTAG 5 cut(s) 35, 150, 852, 1190, 1317
GluI GCNGC 3 cut(s) 886, 977, 1889
GsuI CTGGAG 1 cut(s) 1656
HaeIII GGCC 5 cut(s) 105, 148, 784, 1575, 1804
HapII CCGG 2 cut(s) 213, 1626
Hin1II CATG 7 cut(s) 26, 49, 141, 162, 274, 433, 1841
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 2 cut(s) 1105, 1349
HpaII CCGG 2 cut(s) 213, 1626
HphI GGTGA 7 cut(s) 227, 248, 371, 584, 688, 722, 973
Hpy166II GTNNAC 3 cut(s) 412, 591, 713
Hpy188I TCNGA 7 cut(s) 227, 619, 694, 796, 1393, 1437, 1824
Hpy188III TCNNGA 9 cut(s) 296, 353, 398, 852, 875, 1014, 1424, 1673, 1811
Hpy8I GTNNAC 3 cut(s) 412, 591, 713
HpyAV CCTTC 5 cut(s) 350, 657, 881, 1210, 1889
HpyCH4III ACNGT 7 cut(s) 10, 252, 563, 690, 1208, 1421, 1793
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
Hsp92II CATG 7 cut(s) 26, 49, 141, 162, 274, 433, 1841
KpnI GGTACC 1 cut(s) 1879
Ksp22I TGATCA 2 cut(s) 3, 508
Kzo9I GATC 8 cut(s) 3, 190, 508, 858, 1432, 1437, 1448, 1552
LmnI GCTCC 2 cut(s) 287, 1563
Lsp1109I GCAGC 3 cut(s) 897, 963, 1900
LweI GCATC 1 cut(s) 1677
MaeI CTAG 5 cut(s) 35, 150, 852, 1190, 1317
MaeIII GTNAC 4 cut(s) 339, 748, 1173, 1628
MalI GATC 8 cut(s) 5, 192, 510, 860, 1434, 1439, 1450, 1554
MboI GATC 8 cut(s) 3, 190, 508, 858, 1432, 1437, 1448, 1552
MboII GAAGA 5 cut(s) 960, 1390, 1483, 1543, 1757
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 1 cut(s) 1448
MhlI GDGCHC 1 cut(s) 557
MlyI GAGTC 3 cut(s) 186, 316, 823
MmeI TCCRAC 1 cut(s) 1427
MroXI GAANNNNTTC 2 cut(s) 808, 870
MseI TTAA 8 cut(s) 66, 113, 905, 1023, 1719, 1727, 1776, 1893
MslI CAYNNNNRTG 4 cut(s) 44, 142, 959, 1140
MspCI CTTAAG 2 cut(s) 65, 1022
MspI CCGG 2 cut(s) 213, 1626
MspR9I CCNGG 2 cut(s) 447, 1453
MunI CAATTG 1 cut(s) 186
Mva1269I GAATGC 1 cut(s) 530
MvaI CCWGG 2 cut(s) 447, 1453
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeI CATATG 2 cut(s) 1547, 1586
NdeII GATC 8 cut(s) 3, 190, 508, 858, 1432, 1437, 1448, 1552
NlaIII CATG 7 cut(s) 26, 49, 141, 162, 274, 433, 1841
NlaIV GGNNCC 3 cut(s) 122, 1450, 1877
NmuCI GTSAC 2 cut(s) 339, 1173
NspI RCATGY 1 cut(s) 1841
OliI CACNNNNGTG 1 cut(s) 959
PaeI GCATGC 1 cut(s) 1841
PaqCI CACCTGC 1 cut(s) 949
PctI GAATGC 1 cut(s) 530
PdmI GAANNNNTTC 2 cut(s) 808, 870
PfeI GAWTC 9 cut(s) 29, 441, 757, 866, 951, 1412, 1480, 1518, 1648
PflMI CCANNNNNTGG 3 cut(s) 745, 1163, 1679
PkrI GCNGC 3 cut(s) 887, 978, 1890
PleI GAGTC 3 cut(s) 185, 315, 822
PpsI GAGTC 3 cut(s) 185, 315, 822
PpuMI RGGWCCY 2 cut(s) 52, 301
PshAI GACNNNNGTC 1 cut(s) 306
PsiI TTATAA 1 cut(s) 1131
Psp124BI GAGCTC 1 cut(s) 557
Psp5II RGGWCCY 2 cut(s) 52, 301
Psp6I CCWGG 2 cut(s) 445, 1451
PspGI CCWGG 2 cut(s) 445, 1451
PspN4I GGNNCC 3 cut(s) 122, 1450, 1877
PspPI GGNCC 6 cut(s) 52, 301, 782, 1286, 1400, 1802
PspPPI RGGWCCY 2 cut(s) 52, 301
PsuI RGATCY 1 cut(s) 1448
RsaI GTAC 4 cut(s) 21, 542, 1315, 1877
RsaNI GTAC 4 cut(s) 20, 541, 1314, 1876
RseI CAYNNNNRTG 4 cut(s) 44, 142, 959, 1140
SacI GAGCTC 1 cut(s) 557
SaqAI TTAA 8 cut(s) 66, 113, 905, 1023, 1719, 1727, 1776, 1893
SatI GCNGC 3 cut(s) 886, 977, 1889
Sau3AI GATC 8 cut(s) 3, 190, 508, 858, 1432, 1437, 1448, 1552
Sau96I GGNCC 6 cut(s) 52, 301, 782, 1286, 1400, 1802
ScaI AGTACT 1 cut(s) 542
SchI GAGTC 3 cut(s) 186, 316, 823
ScrFI CCNGG 2 cut(s) 447, 1453
SduI GDGCHC 1 cut(s) 557
SfaNI GCATC 1 cut(s) 1677
SinI GGWCC 4 cut(s) 52, 301, 1286, 1400
SmiMI CAYNNNNRTG 4 cut(s) 44, 142, 959, 1140
SmlI CTYRAG 3 cut(s) 65, 1022, 1562
SmoI CTYRAG 3 cut(s) 65, 1022, 1562
SphI GCATGC 1 cut(s) 1841
SsiI CCGC 1 cut(s) 999
SspI AATATT 1 cut(s) 436
SspMI CTAG 5 cut(s) 35, 150, 852, 1190, 1317
SstI GAGCTC 1 cut(s) 557
StyD4I CCNGG 2 cut(s) 445, 1451
StyI CCWWGG 3 cut(s) 100, 897, 1296
TaaI ACNGT 7 cut(s) 10, 252, 563, 690, 1208, 1421, 1793
TaqI TCGA 1 cut(s) 812
TatI WGTACW 3 cut(s) 19, 540, 1313
TfiI GAWTC 9 cut(s) 29, 441, 757, 866, 951, 1412, 1480, 1518, 1648
Tru1I TTAA 8 cut(s) 66, 113, 905, 1023, 1719, 1727, 1776, 1893
Tru9I TTAA 8 cut(s) 66, 113, 905, 1023, 1719, 1727, 1776, 1893
TscAI CASTG 7 cut(s) 187, 255, 518, 618, 637, 1000, 1531
TseFI GTSAC 2 cut(s) 339, 1173
TseI GCWGC 3 cut(s) 885, 976, 1888
Tsp45I GTSAC 2 cut(s) 339, 1173
TspDTI ATGAA 9 cut(s) 147, 287, 380, 446, 537, 714, 978, 999, 1484
TspRI CASTG 7 cut(s) 187, 255, 518, 618, 637, 1000, 1531
Van91I CCANNNNNTGG 3 cut(s) 745, 1163, 1679
Vha464I CTTAAG 2 cut(s) 65, 1022
VpaK11BI GGWCC 4 cut(s) 52, 301, 1286, 1400
XbaI TCTAGA 1 cut(s) 851
XceI RCATGY 1 cut(s) 1841
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XmnI GAANNNNTTC 2 cut(s) 808, 870
XspI CTAG 5 cut(s) 35, 150, 852, 1190, 1317
ZrmI AGTACT 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.