Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004694

Physical Location & Seq

Genomic Coordinates Forward (+)

9359259 .. 9359708

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG052600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAGAGATGGATTCCAGCAGACTACCCTCCATTCAGTTTTGTGTATAGAATCCTCACTGGGAAGAGTTGTCAAAACATATGGGATCAGCTCCTCAAGGGAAATGGCCTTTTTCCCATATGTGTTTCTAGTTCTGCAATAAGGACATTACAAATCTCCGGTTACATTCAACTGAGTGGGAATCAAATTTCAGGTCAAGTTCCTCCAGAGATTGGTAAGATGCACAATTTTAGTATGTTGCACTTGGTTTTTAATAAATTACAGGGACAACTCCCTGAAGAGATTGGACAAATGCCACTTGTAGTGTTTAACCTCACTAAGAACAGTTTTTCAGGCCAAATCCCAATGAAAATCGAAAACATCAAGTGCATGCAGAATTTGGATTTGTCCTACAACAACTTTTTTGGTACCTTCCCTCGTAGCTTAAACCGATTGACTGAGCTAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009845 GO:0009987 GO:0016020 GO:0016049 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0071944 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

149

Amino Acids

16.92

Weight (kDa)

9.3

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	55 - 148	3e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74360
fragaria_vesca	FvH4_4g04300 FvH4_4g04300 FvH4_5g14410
malus_domestica	MD06G1198600.v1.1 MD14G1206100.v1.1
prunus_persica	Prupe.5G199400_v2.0.a1 Prupe.5G199400_v2.0.a1
pyrus_communis	pycom06g17560
rosa_chinensis	RchiOBHm_Chr4g0394751 RchiOBHm_Chr7g0182251
rosa_laevigata	RLG00000005136 RLG00000009666
rosa_multiflora	Rmu_co8099376.1_g000001 Rmu_sc0000003.1_g000010 Rmu_sc0005356.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271380 Rroxscaffold_5G00339760 Rroxscaffold_5G00339770 Rroxscaffold_5G00339780
rosa_rugosa	Rorug03G0362000.1 Rorug05G0089900 Rorug06G0446400
rosa_samantha	Rh4BG052600 Rh4CG059400 Rh4DG051200 Rh7AG049500 Rh7BG049600 Rh7CG050900 Rh7DG048800
rosa_wichuraiana	Rw7G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	407
AccB1I	GGYRCC	1 cut(s)	407
AccB7I	CCANNNNNTGG	1 cut(s)	212
AclWI	GGATC	1 cut(s)	93
AcsI	RAATTY	2 cut(s)	186, 376
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	3 cut(s)	91, 423, 442
AluI	AGCT	3 cut(s)	91, 423, 442
AlwI	GGATC	1 cut(s)	93
AoxI	GGCC	2 cut(s)	106, 334
ApoI	RAATTY	2 cut(s)	186, 376
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
Asp718I	GGTACC	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	407
BccI	CCATC	1 cut(s)	3
BfaI	CTAG	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	409
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	210
BmuI	ACTGGG	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	80
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	2 cut(s)	164, 429
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	83
BshFI	GGCC	2 cut(s)	108, 336
BshNI	GGYRCC	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	108, 336
Bsp143I	GATC	1 cut(s)	85
BspANI	GGCC	2 cut(s)	108, 336
BspCNI	CTCAG	2 cut(s)	165, 430
BspLI	GGNNCC	1 cut(s)	409
BspPI	GGATC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	407
BsrI	ACTGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	2 cut(s)	59, 273
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	4 cut(s)	173, 318, 438, 443
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstNSI	RCATGY	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	108, 336
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	5 cut(s)	91, 108, 336, 423, 442
CviKI_1	RGCY	5 cut(s)	91, 108, 336, 423, 442
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	4 cut(s)	173, 318, 438, 443
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eam1104I	CTCTTC	2 cut(s)	59, 273
EarI	CTCTTC	2 cut(s)	59, 273
Eco57I	CTGAAG	1 cut(s)	297
FaeI	CATG	1 cut(s)	373
FaiI	YATR	7 cut(s)	48, 80, 82, 119, 121, 236, 371
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	1 cut(s)	369
FauNDI	CATATG	2 cut(s)	80, 119
FspBI	CTAG	1 cut(s)	129
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	108, 336
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	1 cut(s)	373
HinfI	GANTC	3 cut(s)	13, 51, 181
HpaII	CCGG	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	421
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4V	TGCA	5 cut(s)	137, 223, 241, 369, 373
HpyF3I	CTNAG	4 cut(s)	173, 318, 438, 443
Hsp92II	CATG	1 cut(s)	373
KpnI	GGTACC	1 cut(s)	411
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	8 cut(s)	30, 45, 172, 177, 219, 248, 288, 318
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	3 cut(s)	16, 76, 290
MluCI	AATT	4 cut(s)	186, 226, 257, 376
MnlI	CCTC	6 cut(s)	39, 65, 104, 213, 323, 426
MseI	TTAA	3 cut(s)	252, 309, 425
MspI	CCGG	1 cut(s)	159
NdeI	CATATG	2 cut(s)	80, 119
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	1 cut(s)	409
NspI	RCATGY	1 cut(s)	373
PaeI	GCATGC	1 cut(s)	373
PfeI	GAWTC	3 cut(s)	13, 51, 181
PflMI	CCANNNNNTGG	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	409
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	3 cut(s)	252, 309, 425
Sau3AI	GATC	1 cut(s)	85
SetI	ASST	6 cut(s)	93, 196, 315, 413, 425, 444
SfaNI	GCATC	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SphI	GCATGC	1 cut(s)	373
Sse9I	AATT	4 cut(s)	186, 226, 257, 376
SspMI	CTAG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	326
TaqI	TCGA	1 cut(s)	354
TasI	AATT	4 cut(s)	186, 226, 257, 376
TfiI	GAWTC	3 cut(s)	13, 51, 181
Tru1I	TTAA	3 cut(s)	252, 309, 425
Tru9I	TTAA	3 cut(s)	252, 309, 425
TscAI	CASTG	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	17, 362
TspRI	CASTG	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	212
XapI	RAATTY	2 cut(s)	186, 376
XceI	RCATGY	1 cut(s)	373
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.