Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003103

Physical Location & Seq

Genomic Coordinates Reverse (-)

15805228 .. 15816746

Gene Structure 11519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37105

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3255 bp

ATGAGTCATTCAACGGGCTCGCCGAACCAGAAAAACTATGATGAGGAAGCCGGAATCAACCGTTCCGGCGACGACGAGGACTGCTCGAGTGTTTTTGATATTACCAGAACTAAGAATGCTTCCGTCGAGCGTCTCCGCCGTTGGAGGCAAGCGGCACTTGTGCTAAATGCTTCTCGTCGATTCCGGTATACCTTAGACTTGAAAAAGGAGGAAGAAAAAAAGAAGACGTTAAGCAAGATTAGAGCACATGCAGAAGTCATAAGAGCTGCATTTCTTTTCCAGAAATCCATAACACAGGAAAATGGAATTGTGCCACCAAAACCAAGTTCTGCTGGTGAATTTCCAATTGGACAAGAAGAACTAGCTTCAATTTCAAGGGATCATAATTTTACTACTCTGCAGCAATATGGGGGGGTCAAAGGCCTCGGAGGATTATTGAAAACAAGTTTAGAAAAGGGAATTCCTGGAAGTGATGATGATTTACTAAAACGAAAAACTGCATATGGATCCAACACATATCCCCGGAAAAAACCAAGGAGTTTCTGGAGATTTCTCTGGGAAGCTTGCCAAGATCTTACTCTTATCATTTTGATGGTAGCTGCTGTGGCTTCTTTAGCGCTGGGTATAAAAACAGAGGGTATAAAGGAGGGATGGTATGATGGGGGCAGCATTGCTTTTGCAGTTCTCCTAGTCATTGTTGTGACAGCCATTAGTGACTACAAACAATCTCTGCAGTTCCAGAATCTAAATGAGGAAAAGAGAAATATACAAATTGAGGTTGTCAGAGGTGGCAGACGTGTTGAGGTTTCAATTTATGATCTTGTTGTAGGTGATGTTATACCCCTTAACATTGGTGATCAGGTTCCTGCTGATGGGGTTTTAATCACTGGTCATTCACTTTCAATTGATGAGTCTAGCATGACTGGCGAGTCCAAGATTGTTCGCAAGGACTCCAAAGAACCATTTCTAATGTCCGGCTGCAAAGTAGCAGATGGAAATGGTATAATGCTGGTAACCAGTGTTGGGATTAATACTGAATGGGGATTACTCATGGCTAGCATCTCCGAAGACACTGGTGAAGAAACACCCTTGCAGGTGCGCTTGAATGGGGTTGCTACCTTCATTGGTATTGTGGGGCTCACAGTAGCTTTCCTCGTCTTATGTGTCCTTTTGGTCAGATACTTTACTGGCCATACAACAAATGCAGATGGAACTACTCAGTTTGTTGCCGGAAAGACAAAATTTGGGAAAGCCATAGATGGAGCCATCAAAATTGTCACTATTGCAGTCACCATTGTAGTGGTTGCTGTTCCTGAAGGCCTCCCCTTGGCTGTTACCTTAACACTTGCGTACTCAATGAGAAAAATGATGGCAGATAAGGCCTTGGTACGTAGGCTTTCTGCATGTGAAACAATGGGCTCGGCCACTACTATATGCAGTGATAAGACTGGTACCTTAACTTTGAACCAGATGGCTGTGGTCGAGTCTTGTGCATGTTTGAAGAAAGTCAATAACTCTGATGGCAAGCCAGACTTGTCGCCAAAAATATCATCTTTGATTATTGAAGGCATAGCTCAGAATACAACTGGCAATGTTTATGTGCCTGAGACTGGTGGTGACGTAGAGGTTACTGGATCACCAACAGAGAAGGCAATTCTGCAGTGGGCACTCAAGCTTGGGATGAATTTTGAAGCCACCAGATCGCAATCTTCAATTCTTCATGTGTTCCCATTCAACTCTGAGAAAAAACGAGGCGGTGTAGCAGTTAAATTGCCAAACAATAAAGTTCATATACACTGGAAAGGGGCTGCTGAAATAATCTTGGCCTCATGCACAAGATACATTGACAACAATGATCAGGTGGCTGCAATGGACGACGACAAGCTTATGTTTTTCAGGAAATCTATTGAGGATATGGCTGGTCGTAGTTTGCGTTGTGTTGCTATAGCATATTTACCATATGAATTGGAAAATGTTCCAGCTGGTGAACAACAATTAGCTGATTGGGCAATGCCTGCAGATGACCTTGTTTTACTTGCTATTGTTGGTATAAAGGATCCTTGTCGACCAGGAGTCGCAGATGCAGTGAGACTATGCCAAAAGGCTGGCGTTAAGGTACGCATGGTTACTGGAGACAATGTTCAGACTGCAAAGGCAATAGCATTGGAATGTGGTATACTGCGTACTGATTCAGATCTTAGTGAGCATCTAATTGAAGGGAAAGACTTCCGTGAGCTATCAGATGATAGGCTGAGAGAAGAGGTTGCTGAGAAAATCTCGGTAATGGGACGATCCTCTCCTAATGATAAGCTTCTGCTTGTGCAAGCGCTGAGGAGAAGGGGACATGTTGTTGCTGTTACTGGAGATGGCACTAATGATGCTCCTGCACTACATGAGGCCGACATTGGTCTTGCTATGGGTATTCAAGGTACTGAGGTTGCCAAAGAGAGTTCTGATATCATTATCTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGACGTTCTGTATATGCAAATATTCAGAAATTCATCCAATTCCAACTCACTGTCAATGTTGCCGCACTTGTTATCAATGTTGTGGCAGCAATTTCCTCTGGTGAAGTACCACTAAATGCTGTTCAGCTTCTGTGGGTGAATCTTATAATGGATACTCTTGGAGCACTAGCATTGGCTACTGAGCCTCCTACGAATCATCTGATGGACAGACCTCCTGTTGGTCGAAGGGAACCGCTGATAACTAATATTATGTGGAGGAACTTATTGATTCAGGCTATCTACCAAATTACGGTCCTCCTTATCTTTAATTTCCGAGGGAAAAGTATTCTCAATCTGAAACATGATTCTACTGACCATGCGGACAAAGTGAAGAACACACTTATATTCAATACCTTTGTCCTCTGTCAAATTTTCAATGAATTCAATGCCAGGAAGCCGGATGAATTCAACATATTCAAAGGAATTACCAAAAATTATCTCTTTATGGGAATAATTGCAGTGACACTTGTACTTCAGATTCTCATTGTCGAGTTTCTGGGGAAGTTTACTACAACAGTCCGGCTTAACTGGAAGCATTGGTTGATTTCTGTTGTCATCGCTTTTATCAGTTGGCCTCTTGCTGTTGTAGGGAAGTTTATTCCGGTACCCGAAACTCCTTTCCACAGATATTTCACTAGGAGTCCTCTCTTTAAGTTTATAACTCGAATATTCCGTCGGCGAAAAGAGAGAACAGAGGCCTGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1084

Amino Acids

119.32

Weight (kDa)

8.57

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	31 - 72	1.7e-17	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	136 - 204	1.7e-13	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	258 - 353	1.6e-20	P-type ATPase actuator domain
Cation_ATPase	PF13246	519 - 690	9e-32	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	677 - 801	3.5e-14	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	872 - 1048	8.2e-45	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29900 AT4G29900 AT5G57110 AT5G57110 AT5G57110
fragaria_vesca	FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940
malus_domestica	MD13G1241000.v1.1 MD16G1245600.v1.1 MD16G1246100.v1.1
prunus_persica	Prupe.1G072600_v2.0.a1 Prupe.8G012900_v2.0.a1
pyrus_communis	pycom13g21220
rosa_chinensis	RchiOBHm_Chr4g0398891 RchiOBHm_Chr4g0398951
rosa_laevigata	RLG00000009307 RLG00000009309 RLG00000009365
rosa_multiflora	Rmu_sc0004094.1_g000033 Rmu_ssc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343340 Rroxscaffold_5G00343930 Rroxscaffold_5G00344000
rosa_rugosa	Rorug04G0013200
rosa_samantha	Rh4AG091100 Rh4CG093100 Rh4CG099100 Rh4CG099400
rosa_wichuraiana	Rw4G007100 Rw4G007130 Rw4G007500 Rw4G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2654, 3206
AarI	CACCTGC	1 cut(s)	1084
AasI	GACNNNNNNGTC	1 cut(s)	928
Acc36I	ACCTGC	1 cut(s)	1084
Acc65I	GGTACC	2 cut(s)	1451, 3151
AccB1I	GGYRCC	2 cut(s)	1451, 3151
AccI	GTMKAC	3 cut(s)	188, 2065, 2176
AciI	CCGC	6 cut(s)	136, 152, 1755, 2571, 2741, 2867
AclWI	GGATC	7 cut(s)	387, 501, 514, 1642, 2051, 2064, 2286
AcoI	YGGCCR	2 cut(s)	1189, 1422
AcsI	RAATTY	8 cut(s)	338, 459, 1241, 1684, 2537, 2916, 2927, 2951
AcuI	CTGAAG	3 cut(s)	1335, 2469, 3005
AfaI	GTAC	9 cut(s)	1352, 1389, 1453, 2118, 2185, 2431, 2616, 3018, 3153
AfeI	AGCGCT	2 cut(s)	618, 2328
AfiI	CCNNNNNNNGG	6 cut(s)	872, 1023, 1327, 1610, 2726, 2797
AflIII	ACRYGT	2 cut(s)	796, 2344
AhdI	GACNNNNNGTC	1 cut(s)	2072
AjiI	CACGTC	1 cut(s)	797
AjnI	CCWGG	3 cut(s)	463, 2068, 2936
AjuI	GAANNNNNNNTTGG	4 cut(s)	310, 330, 342, 362
AloI	GAACNNNNNNTCC	2 cut(s)	2124, 2156
Alw21I	GWGCWC	2 cut(s)	247, 2674
Alw26I	GTCTC	4 cut(s)	137, 1601, 2083, 2127
AlwI	GGATC	7 cut(s)	387, 501, 514, 1642, 2051, 2064, 2286
AlwNI	CAGNNNCTG	1 cut(s)	2638
Ama87I	CYCGRG	1 cut(s)	85
Aor51HI	AGCGCT	2 cut(s)	618, 2328
AoxI	GGCC	9 cut(s)	421, 1189, 1318, 1380, 1422, 1824, 2397, 3119, 3243
ApeKI	GCWGC	8 cut(s)	266, 400, 599, 666, 978, 1808, 1865, 2594
ApoI	RAATTY	8 cut(s)	338, 459, 1241, 1684, 2537, 2916, 2927, 2951
ArsI	GACNNNNNNTTYG	2 cut(s)	3205, 3237
AseI	ATTAAT	1 cut(s)	1029
Asp700I	GAANNNNTTC	3 cut(s)	963, 1974, 2225
Asp718I	GGTACC	2 cut(s)	1451, 3151
AspLEI	GCGC	3 cut(s)	619, 1101, 2329
AspS9I	GGNCC	1 cut(s)	2800
AsuC2I	CCSGG	1 cut(s)	523
AsuNHI	GCTAGC	1 cut(s)	1055
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	2800
BaeGI	GKGCMC	1 cut(s)	1669
BaeI	ACNNNNGTAYC	2 cut(s)	2421, 2454
BalI	TGGCCA	1 cut(s)	1191
BamHI	GGATCC	2 cut(s)	506, 2056
BanI	GGYRCC	2 cut(s)	1451, 3151
BanII	GRGCYC	3 cut(s)	20, 1140, 1421
BbsI	GAAGAC	2 cut(s)	230, 1074
Bbv12I	GWGCWC	2 cut(s)	247, 2674
BbvCI	CCTCAGC	1 cut(s)	2330
BbvI	GCAGC	8 cut(s)	253, 412, 586, 678, 965, 1795, 1852, 2606
BceAI	ACGGC	1 cut(s)	123
BcgI	CGANNNNNNTGC	2 cut(s)	1472, 1506
BciT130I	CCWGG	3 cut(s)	465, 2070, 2938
BciVI	GTATCC	1 cut(s)	2653
BclI	TGATCA	2 cut(s)	856, 1855
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	4 cut(s)	137, 1601, 2083, 2127
BfaI	CTAG	6 cut(s)	362, 689, 915, 1056, 2675, 3183
BfmI	CTRYAG	5 cut(s)	398, 731, 1658, 1944, 2016
BfoI	RGCGCY	2 cut(s)	620, 2330
BfuAI	ACCTGC	1 cut(s)	1084
BfuI	GTATCC	1 cut(s)	2653
BglII	AGATCT	2 cut(s)	571, 2194
Bme1390I	CCNGG	4 cut(s)	465, 523, 2070, 2938
Bme18I	GGWCC	1 cut(s)	2800
BmeRI	GACNNNNNGTC	1 cut(s)	2072
BmeT110I	CYCGRG	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	797
BmgT120I	GGNCC	1 cut(s)	2800
BmiI	GGNNCC	7 cut(s)	508, 864, 1264, 1453, 2058, 2739, 3153
BmrFI	CCNGG	4 cut(s)	465, 523, 2070, 2938
BmsI	GCATC	4 cut(s)	1068, 2071, 2215, 2368
BmtI	GCTAGC	1 cut(s)	1059
BoxI	GACNNNNGTC	1 cut(s)	2406
BpiI	GAAGAC	2 cut(s)	230, 1074
BplI	GAGNNNNNCTC	4 cut(s)	68, 100, 2261, 2293
BpmI	CTGGAG	3 cut(s)	565, 2151, 2382
Bpu10I	CCTNAGC	1 cut(s)	2330
BpuEI	CTTGAG	1 cut(s)	1655
BpuMI	CCSGG	1 cut(s)	523
BsaAI	YACGTR	1 cut(s)	1391
BsaBI	GATNNNNATC	2 cut(s)	1705, 2193
BsaJI	CCNNGG	6 cut(s)	424, 521, 533, 1326, 1383, 2821
BsaWI	WCCGGW	2 cut(s)	183, 3148
BsaXI	ACNNNNNCTCC	6 cut(s)	638, 668, 2124, 2154, 2677, 2707
Bsc4I	CCNNNNNNNGG	6 cut(s)	872, 1023, 1327, 1610, 2726, 2797
Bse3DI	GCAATG	4 cut(s)	669, 1597, 1875, 2016
Bse8I	GATNNNNATC	2 cut(s)	1705, 2193
BseBI	CCWGG	3 cut(s)	465, 2070, 2938
BseDI	CCNNGG	6 cut(s)	424, 521, 533, 1326, 1383, 2821
BseGI	GGATG	5 cut(s)	656, 1686, 2476, 2541, 2953
BseJI	GATNNNNATC	2 cut(s)	1705, 2193
BseLI	CCNNNNNNNGG	6 cut(s)	872, 1023, 1327, 1610, 2726, 2797
BseMI	GCAATG	4 cut(s)	669, 1597, 1875, 2016
BseMII	CTCAG	9 cut(s)	1232, 1589, 1596, 1731, 2243, 2259, 2321, 2424, 2679
BseRI	GAGGAG	1 cut(s)	2347
BseSI	GKGCMC	1 cut(s)	1669
BseXI	GCAGC	8 cut(s)	253, 412, 586, 678, 965, 1795, 1852, 2606
BseYI	CCCAGC	1 cut(s)	619
BsgI	GTGCAG	1 cut(s)	2370
BshFI	GGCC	9 cut(s)	423, 1191, 1320, 1382, 1424, 1826, 2399, 3121, 3245
BshNI	GGYRCC	2 cut(s)	1451, 3151
BsiHKAI	GWGCWC	2 cut(s)	247, 2674
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	9 cut(s)	51, 66, 184, 523, 975, 1230, 2945, 3067, 3149
BslFI	GGGAC	3 cut(s)	2301, 2355, 2523
BslI	CCNNNNNNNGG	6 cut(s)	872, 1023, 1327, 1610, 2726, 2797
BsmAI	GTCTC	4 cut(s)	137, 1601, 2083, 2127
BsmBI	CGTCTC	1 cut(s)	137
BsmFI	GGGAC	3 cut(s)	2301, 2355, 2523
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	9 cut(s)	423, 1191, 1320, 1382, 1424, 1826, 2399, 3121, 3245
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	6 cut(s)	20, 247, 1140, 1421, 1669, 2674
BspACI	CCGC	6 cut(s)	136, 152, 1755, 2571, 2741, 2867
BspANI	GGCC	9 cut(s)	423, 1191, 1320, 1382, 1424, 1826, 2399, 3121, 3245
BspCNI	CTCAG	9 cut(s)	1231, 1588, 1597, 1732, 2244, 2260, 2322, 2425, 2680
BspLI	GGNNCC	7 cut(s)	508, 864, 1264, 1453, 2058, 2739, 3153
BspMAI	CTGCAG	4 cut(s)	402, 735, 1662, 2020
BspMI	ACCTGC	1 cut(s)	1084
BspOI	GCTAGC	1 cut(s)	1059
BspPI	GGATC	7 cut(s)	387, 501, 514, 1642, 2051, 2064, 2286
BspT107I	GGYRCC	2 cut(s)	1451, 3151
BsrDI	GCAATG	4 cut(s)	669, 1597, 1875, 2016
BssECI	CCNNGG	6 cut(s)	424, 521, 533, 1326, 1383, 2821
BssNAI	GTATAC	2 cut(s)	189, 2177
BssT1I	CCWWGG	3 cut(s)	533, 1326, 1383
Bst1107I	GTATAC	2 cut(s)	189, 2177
Bst2UI	CCWGG	3 cut(s)	465, 2070, 2938
Bst4CI	ACNGT	5 cut(s)	62, 1144, 2560, 2800, 3064
Bst6I	CTCTTC	1 cut(s)	2253
BstAPI	GCANNNNNTGC	1 cut(s)	2015
BstBAI	YACGTR	1 cut(s)	1391
BstC8I	GCNNGC	8 cut(s)	20, 150, 565, 1057, 1526, 2016, 2107, 2325
BstEII	GGTNACC	1 cut(s)	1012
BstF5I	GGATG	5 cut(s)	656, 1686, 2476, 2541, 2953
BstH2I	RGCGCY	2 cut(s)	620, 2330
BstHHI	GCGC	3 cut(s)	619, 1101, 2329
BstMAI	GTCTC	4 cut(s)	137, 1601, 2083, 2127
BstMWI	GCNNNNNNNGC	6 cut(s)	605, 614, 924, 1379, 2006, 2015
BstNI	CCWGG	3 cut(s)	465, 2070, 2938
BstNSI	RCATGY	4 cut(s)	251, 1407, 1497, 2348
BstPAI	GACNNNNGTC	1 cut(s)	2406
BstPI	GGTNACC	1 cut(s)	1012
BstSCI	CCNGG	4 cut(s)	463, 521, 2068, 2936
BstSFI	CTRYAG	5 cut(s)	398, 731, 1658, 1944, 2016
BstSLI	GKGCMC	1 cut(s)	1669
BstSNI	TACGTA	1 cut(s)	1391
BstV1I	GCAGC	8 cut(s)	253, 412, 586, 678, 965, 1795, 1852, 2606
BstV2I	GAAGAC	2 cut(s)	230, 1074
BstX2I	RGATCY	4 cut(s)	506, 571, 2056, 2194
BstXI	CCANNNNNNTGG	2 cut(s)	1300, 2105
BstYI	RGATCY	4 cut(s)	506, 571, 2056, 2194
BstZ17I	GTATAC	2 cut(s)	189, 2177
BsuI	GTATCC	1 cut(s)	2653
BsuRI	GGCC	9 cut(s)	423, 1191, 1320, 1382, 1424, 1826, 2399, 3121, 3245
BtgZI	GCGATG	1 cut(s)	3088
BtrI	CACGTC	1 cut(s)	797
BtsCI	GGATG	5 cut(s)	656, 1686, 2476, 2541, 2953
BtsI	GCAGTG	4 cut(s)	1444, 1667, 2091, 3012
BtsIMutI	CAGTG	9 cut(s)	885, 1024, 1071, 1444, 1667, 1795, 2091, 2556, 3012
BveI	ACCTGC	1 cut(s)	1084
Cac8I	GCNNGC	8 cut(s)	20, 150, 565, 1057, 1526, 2016, 2107, 2325
CaiI	CAGNNNCTG	1 cut(s)	2638
CfoI	GCGC	3 cut(s)	619, 1101, 2329
Cfr13I	GGNCC	1 cut(s)	2800
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	9 cut(s)	1351, 1388, 1452, 2117, 2184, 2430, 2615, 3017, 3152
CviQI	GTAC	9 cut(s)	1351, 1388, 1452, 2117, 2184, 2430, 2615, 3017, 3152
DrdI	GACNNNNNNGTC	1 cut(s)	928
DriI	GACNNNNNGTC	1 cut(s)	2072
DseDI	GACNNNNNNGTC	1 cut(s)	928
EaeI	YGGCCR	2 cut(s)	1189, 1422
Eam1104I	CTCTTC	1 cut(s)	2253
Eam1105I	GACNNNNNGTC	1 cut(s)	2072
EarI	CTCTTC	1 cut(s)	2253
EciI	GGCGGA	1 cut(s)	125
Eco105I	TACGTA	1 cut(s)	1391
Eco130I	CCWWGG	3 cut(s)	533, 1326, 1383
Eco147I	AGGCCT	4 cut(s)	423, 1320, 1382, 3245
Eco24I	GRGCYC	3 cut(s)	20, 1140, 1421
Eco32I	GATATC	1 cut(s)	2458
Eco47I	GGWCC	1 cut(s)	2800
Eco47III	AGCGCT	2 cut(s)	618, 2328
Eco57I	CTGAAG	3 cut(s)	1335, 2469, 3005
Eco88I	CYCGRG	1 cut(s)	85
Eco91I	GGTNACC	1 cut(s)	1012
EcoO65I	GGTNACC	1 cut(s)	1012
EcoRI	GAATTC	3 cut(s)	459, 2927, 2951
EcoRII	CCWGG	3 cut(s)	463, 2068, 2936
EcoRV	GATATC	1 cut(s)	2458
EcoT14I	CCWWGG	3 cut(s)	533, 1326, 1383
EcoT38I	GRGCYC	3 cut(s)	20, 1140, 1421
ErhI	CCWWGG	3 cut(s)	533, 1326, 1383
Esp3I	CGTCTC	1 cut(s)	137
FalI	AAGNNNNNCTT	4 cut(s)	141, 173, 1517, 1549
FaqI	GGGAC	3 cut(s)	2301, 2355, 2523
FauNDI	CATATG	2 cut(s)	502, 1960
FbaI	TGATCA	2 cut(s)	856, 1855
FblI	GTMKAC	3 cut(s)	188, 2065, 2176
FokI	GGATG	5 cut(s)	663, 1693, 2483, 2528, 2960
FriOI	GRGCYC	3 cut(s)	20, 1140, 1421
FspBI	CTAG	6 cut(s)	362, 689, 915, 1056, 2675, 3183
GlaI	GCGC	3 cut(s)	618, 1100, 2328
GsaI	CCCAGC	1 cut(s)	623
GsuI	CTGGAG	3 cut(s)	565, 2151, 2382
HaeII	RGCGCY	2 cut(s)	620, 2330
HaeIII	GGCC	9 cut(s)	423, 1191, 1320, 1382, 1424, 1826, 2399, 3121, 3245
HapII	CCGG	9 cut(s)	51, 66, 184, 523, 975, 1230, 2945, 3067, 3149
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	3 cut(s)	619, 1101, 2329
Hin6I	GCGC	3 cut(s)	617, 1099, 2327
HinP1I	GCGC	3 cut(s)	617, 1099, 2327
HincII	GTYRAC	1 cut(s)	2066
HindII	GTYRAC	1 cut(s)	2066
HindIII	AAGCTT	4 cut(s)	561, 1673, 1883, 2309
HpaII	CCGG	9 cut(s)	51, 66, 184, 523, 975, 1230, 2945, 3067, 3149
Hpy166II	GTNNAC	5 cut(s)	189, 1988, 2066, 2177, 3054
Hpy188III	TCNNGA	5 cut(s)	280, 544, 739, 1313, 1897
Hpy8I	GTNNAC	5 cut(s)	189, 1988, 2066, 2177, 3054
Hpy99I	CGWCG	6 cut(s)	74, 77, 128, 180, 1880, 3225
HpyAV	CCTTC	8 cut(s)	1129, 1310, 1559, 1642, 2210, 2331, 2488, 2727
HpyCH4III	ACNGT	5 cut(s)	62, 1144, 2560, 2800, 3064
HpyCH4IV	ACGT	5 cut(s)	227, 796, 1390, 1620, 2512
HpyF10VI	GCNNNNNNNGC	6 cut(s)	605, 614, 924, 1379, 2006, 2015
HpySE526I	ACGT	5 cut(s)	227, 796, 1390, 1620, 2512
HspAI	GCGC	3 cut(s)	617, 1099, 2327
KpnI	GGTACC	2 cut(s)	1455, 3155
Ksp22I	TGATCA	2 cut(s)	856, 1855
LmnI	GCTCC	3 cut(s)	1262, 2386, 2669
Lsp1109I	GCAGC	8 cut(s)	253, 412, 586, 678, 965, 1795, 1852, 2606
LweI	GCATC	4 cut(s)	1068, 2071, 2215, 2368
MaeI	CTAG	6 cut(s)	362, 689, 915, 1056, 2675, 3183
MaeII	ACGT	5 cut(s)	227, 796, 1390, 1620, 2512
MfeI	CAATTG	2 cut(s)	345, 903
MflI	RGATCY	4 cut(s)	506, 571, 2056, 2194
MhlI	GDGCHC	6 cut(s)	20, 247, 1140, 1421, 1669, 2674
MlsI	TGGCCA	1 cut(s)	1191
MluNI	TGGCCA	1 cut(s)	1191
MlyI	GAGTC	7 cut(s)	13, 920, 938, 944, 1493, 2082, 3196
MmeI	TCCRAC	3 cut(s)	122, 534, 2575
Mox20I	TGGCCA	1 cut(s)	1191
MroXI	GAANNNNTTC	3 cut(s)	963, 1974, 2225
MscI	TGGCCA	1 cut(s)	1191
MslI	CAYNNNNRTG	4 cut(s)	590, 698, 1298, 2167
Msp20I	TGGCCA	1 cut(s)	1191
MspA1I	CMGCKG	2 cut(s)	1982, 2743
MspI	CCGG	9 cut(s)	51, 66, 184, 523, 975, 1230, 2945, 3067, 3149
MspR9I	CCNGG	4 cut(s)	465, 523, 2070, 2938
MunI	CAATTG	2 cut(s)	345, 903
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	3 cut(s)	465, 2070, 2938
MwoI	GCNNNNNNNGC	6 cut(s)	605, 614, 924, 1379, 2006, 2015
NciI	CCSGG	1 cut(s)	523
NdeI	CATATG	2 cut(s)	502, 1960
NheI	GCTAGC	1 cut(s)	1055
NlaIV	GGNNCC	7 cut(s)	508, 864, 1264, 1453, 2058, 2739, 3153
NmeAIII	GCCGAG	1 cut(s)	1400
NmuCI	GTSAC	6 cut(s)	700, 713, 1276, 1288, 1616, 3007
NspI	RCATGY	4 cut(s)	251, 1407, 1497, 2348
PaeR7I	CTCGAG	1 cut(s)	85
PaqCI	CACCTGC	1 cut(s)	1084
PceI	AGGCCT	4 cut(s)	423, 1320, 1382, 3245
PciI	ACATGT	1 cut(s)	2344
PcsI	WCGNNNNNNNCGW	3 cut(s)	20, 1930, 3217
PctI	GAATGC	1 cut(s)	121
PdmI	GAANNNNTTC	3 cut(s)	963, 1974, 2225
PfeI	GAWTC	9 cut(s)	54, 180, 742, 2189, 2647, 2701, 2776, 2852, 3025
PfoI	TCCNGGA	1 cut(s)	463
PleI	GAGTC	7 cut(s)	12, 919, 937, 944, 1492, 2081, 3195
PpsI	GAGTC	7 cut(s)	12, 919, 937, 944, 1492, 2081, 3195
Ppu21I	YACGTR	1 cut(s)	1391
PscI	ACATGT	1 cut(s)	2344
PshAI	GACNNNNGTC	1 cut(s)	2406
PshBI	ATTAAT	1 cut(s)	1029
PsiI	TTATAA	2 cut(s)	2654, 3206
Psp6I	CCWGG	3 cut(s)	463, 2068, 2936
PspEI	GGTNACC	1 cut(s)	1012
PspFI	CCCAGC	1 cut(s)	619
PspGI	CCWGG	3 cut(s)	463, 2068, 2936
PspN4I	GGNNCC	7 cut(s)	508, 864, 1264, 1453, 2058, 2739, 3153
PspPI	GGNCC	1 cut(s)	2800
PspXI	VCTCGAGB	1 cut(s)	85
PstI	CTGCAG	4 cut(s)	402, 735, 1662, 2020
PstNI	CAGNNNCTG	1 cut(s)	2638
PsuI	RGATCY	4 cut(s)	506, 571, 2056, 2194
PvuII	CAGCTG	1 cut(s)	1982
RsaI	GTAC	9 cut(s)	1352, 1389, 1453, 2118, 2185, 2431, 2616, 3018, 3153
RsaNI	GTAC	9 cut(s)	1351, 1388, 1452, 2117, 2184, 2430, 2615, 3017, 3152
RseI	CAYNNNNRTG	4 cut(s)	590, 698, 1298, 2167
SalI	GTCGAC	1 cut(s)	2064
Sau96I	GGNCC	1 cut(s)	2800
SchI	GAGTC	7 cut(s)	13, 920, 938, 944, 1493, 2082, 3196
ScrFI	CCNGG	4 cut(s)	465, 523, 2070, 2938
SduI	GDGCHC	6 cut(s)	20, 247, 1140, 1421, 1669, 2674
SfaNI	GCATC	4 cut(s)	1068, 2071, 2215, 2368
SfcI	CTRYAG	5 cut(s)	398, 731, 1658, 1944, 2016
Sfr274I	CTCGAG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	2800
SlaI	CTCGAG	1 cut(s)	85
SmiMI	CAYNNNNRTG	4 cut(s)	590, 698, 1298, 2167
SmlI	CTYRAG	2 cut(s)	85, 1670
SmoI	CTYRAG	2 cut(s)	85, 1670
SnaBI	TACGTA	1 cut(s)	1391
SseBI	AGGCCT	4 cut(s)	423, 1320, 1382, 3245
SsiI	CCGC	6 cut(s)	136, 152, 1755, 2571, 2741, 2867
SspI	AATATT	3 cut(s)	2530, 2755, 3216
SspMI	CTAG	6 cut(s)	362, 689, 915, 1056, 2675, 3183
StuI	AGGCCT	4 cut(s)	423, 1320, 1382, 3245
StyD4I	CCNGG	4 cut(s)	463, 521, 2068, 2936
StyI	CCWWGG	3 cut(s)	533, 1326, 1383
TaaI	ACNGT	5 cut(s)	62, 1144, 2560, 2800, 3064
TaiI	ACGT	5 cut(s)	230, 799, 1393, 1623, 2515
TaqI	TCGA	8 cut(s)	86, 126, 178, 1482, 2065, 2731, 3036, 3211
TatI	WGTACW	1 cut(s)	3016
TauI	GCSGC	2 cut(s)	155, 2573
TfiI	GAWTC	9 cut(s)	54, 180, 742, 2189, 2647, 2701, 2776, 2852, 3025
TscAI	CASTG	9 cut(s)	892, 1024, 1078, 1444, 1667, 1802, 2091, 2563, 3012
TseFI	GTSAC	6 cut(s)	700, 713, 1276, 1288, 1616, 3007
TseI	GCWGC	8 cut(s)	266, 400, 599, 666, 978, 1808, 1865, 2594
Tsp45I	GTSAC	6 cut(s)	700, 713, 1276, 1288, 1616, 3007
TspDTI	ATGAA	8 cut(s)	1111, 1697, 1709, 1778, 1977, 2530, 2940, 2964
TspGWI	ACGGA	3 cut(s)	112, 2219, 3209
TspRI	CASTG	9 cut(s)	892, 1024, 1078, 1444, 1667, 1802, 2091, 2563, 3012
VpaK11BI	GGWCC	1 cut(s)	2800
VspI	ATTAAT	1 cut(s)	1029
XapI	RAATTY	8 cut(s)	338, 459, 1241, 1684, 2537, 2916, 2927, 2951
XceI	RCATGY	4 cut(s)	251, 1407, 1497, 2348
XcmI	CCANNNNNNNNNTGG	1 cut(s)	540
XhoI	CTCGAG	1 cut(s)	85
XmiI	GTMKAC	3 cut(s)	188, 2065, 2176
XmnI	GAANNNNTTC	3 cut(s)	963, 1974, 2225
XspI	CTAG	6 cut(s)	362, 689, 915, 1056, 2675, 3183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.