Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003103

Physical Location & Seq

Genomic Coordinates Reverse (-)

16104697 .. 16116315

Gene Structure 11619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G007540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3252 bp

ATGAGTCATTCAACGGGCTCGCCAAACGATGTGGAAGCCGGAAGCAACCGTTCCGGCGACGACGAGGAGTCGTCGAATGTTTTTGATATTACCAGAACTAAGCATGCTTCCATCGACCGTCTCCGCCGTTGGAGGCAAACGGCACTTGTGCTAAATGCTTCTCGTCGATTCCGGTATACCTTAGACTTGAAAAAGGAGGAAGAAAAAAAGCAGACGTTAAGGAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATTTCTTTTCAAGGAATCCGTAACACAGGAAAATGGAATTGTTCCACCAAAACCAAGTTCTGCTGGTGAATTTCCAATTGGACAAGAAGAACTAGCTTCAATTTCAAGAAATCATAATTTTACTACTCTGCAGCAATATGGGGGGGTCAAAGGCCTCGGAGAATTATTGAAAACAAGTTTAGAAAAGGGAATTCCTGGAAGTGATGATGATTTACTAAAACGAAAAACTGCATATGGATCCAACACATATCCCCGGAAAAAACCAAGGAGTTTCTGGAGATTTCTCTGGGAAGCTTGCCAAGATCTTACTCTTATCATTTTGATGGTAGCTGCTGTGGCCTCTTTAGCGCTGGGTATAAAAACAGAGGGTATAAAGGAGGGATGGTATGATGGGGGCAGCATTGCTTTTGCAGTTCTTCTGGTCATTGTCGTGACAGCCATTAGTGACTACAAACAATCTCTGCAGTTCCAGAATCTAAATGAGGAAAAGAGAAATATACAAATTGAGGTTATCAGAGGTGGTAGACGTGTTGAGGTTTCAATTTATGATCTTGTTGTAGGTGATGTTATACCCCTTAACATTGGTGATCAGGTTCCTGCTGATGGGGTTTTAATCATTGGTCATTCACTTTCAATTGATGAGTCTAGCATGACTGGCGAGTCCAAGATTGTTCGCAAGGACTCCAAAGAACCATTTCTAATGTCCGGCTGCAAAGTAGCAGATGGAAATGGTATAATGCTGGTAACCAGTGTTGGGATTAATACTGAATGGGGATTACTCATGGCTAGCATCTCGGAAGACACTGGTGAAGAAACACCCTTGCAGGTGCGCTTGAATGGGGTTGCTACCTTCATTGGTGTTGTGGGACTCACAGTAGCTCTCCTCGTCTTATGTGTCCTTTTGGTCAGATACTTTACTGGCCATACAACAAATGCAGATGGAACTCGTCAGTTTGTTGCCGGAAAGACAAAATTTGGGAAAGCCATAGATGGAGCCATCAAAATTGTCACTATTGCAGTCACCATTGTAGTGGTTGCTGTTCCGGAAGGCCTCCCCTTAGCTGTTACCTTAACACTTGCGTACTCAATGAGAAAAATGATGGCAGATAAGGCCTTGGTACGTAGGCTTTCTGCATGTGAAACAATGGGCTCGGCCACTACTATATGCAGTGATAAGACTGGTACCTTAACTTTGAACCAGATGACTGTGGTCAAGTCTTGTGCATGTTTGAAGAAAGTCAATGACTCTGATGGGAAGCCAGACTTGTCGCCAAAGATATCGTCTTTGATTATTGAAGGCATTGCTCAGAATACAACTGGCAATGTTTATGTTCCTGAGACTGGTGGTGATGTAGAGGTTACTGGATCACCAACGGAGAAGGCAATTATGCAGTGGGCACTCAAGCTTGGGATGAATTTTGAAGCCACCAGGTCTCAATCTTCAATTCTTCATGTGTTCCCATTCAACTCCGAGAAAAAACGAGGCGGTGTAGCAGTTAAATTGCCAAACAATGAAGTTCATATACACTGGAAAGGGGCTGCTGAAATAATCTTGGCCTCATGCACAAGATACATTGACGACAATGATCAGGTGGCAGCAATGGACGACGACAAGCTTATGCTTTTCAGGAAATCTATTGAGGATATGGCTGTTGGTAGTTTGCGTTGTGTTGCTATAGCATATTTACCATATGAATTGGAAAATGTTCCAACTGGTGAACAACAATTAGTTGTTTGGGCCATGCCTGCAGATGACCTTGTTTTACTTGCTATTGTTGGTATAAAGGATCCTTGTCGACCAGGTGTTGGAGATGCAGTGAGACTATGCCAAAAGGCTGGTGTTAAGGTTCGCATGGTTACTGGAGACAATGTTCAGACTGCAAAGGCAATAGCATTGGAATGTGGCATACTGCGTTCTGATTCAGATCTTAGTGAGCCAACTCTAATTGAAGGGAAAGTCTTCCGTGAGCTTTCTGATAGGCGGAGAGAAGAGGTTGCTGAGAAAATCTCGGTAATGGGACGATCCTCTCCTAATGATAAGCTTCTGCTTGTGCAAGCCCTAAGGAGAAGGGGACATGTTGTTGCTGTTACTGGAGATGGCACTAATGATGCTCCTGCACTACATGAGGCCGACATTGGTCTTGCTATGGGTATTCAAGGTACTGAGGTTGCCAAAGAGAGTTCTGATATCATTATCTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGACGCTCTGTATATGCAAATATTCAGAAATTCATCCAATTCCAACTCACTGTCAATGTTGCCGCACTTGTTATTAATGTTGTGGCAGCGATTTCCTCTGGTGAAGTACCACTAAATGCTGTTCAGCTTCTGTGGGTGAATCTTATAATGGATACTCTTGGAGCACTAGCATTGGCCACTGAGCCTCCTACTAATCATCTGATGGACAGACCTCCTGTTGGTCGAAGGGAACCACTGATAACTAATATAATGTGGAGGAACTTATTGATTCAGGCTATCTACCAAATTACGGTCCTCCTTATCTTCAATTTCCGAGGGAAAAGTATTCTCAATCTGGAACATGATTCTAGTCATTCTACTGACCATGCGGGCAAAGTGAAGAACACACTTATATTCAATACCTTTGTCCTCTGTCAAATTTTCAATGAATTCAATGCCAGGAAGCCGGATGAATTCAACATATTCAAAGGAATTACCAAAAATTATCTCTTTATGGGAATAATTGCAGTGACACTTGTACTTCAGATTCTCATTGTCGAGTTTCTGGGGAAGTTTACTACAACAGTCCGGCTTAACTGGAAGCATTGGTTGATTTCTGTTGTCATCGCTTTTATCAGTTGGCCTCTTGCTGTTGTTGGGAAGTTTATTCCGGTACCCGAAACTCCTTTCCACAGATATTTCACTAGGAGTCCTCTCTTTAAGTTTATAACCCGAATATTCCGTCGGCGAAGAGAGAGAACAGAGGTCAGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1083

Amino Acids

119.18

Weight (kDa)

8.69

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	26 - 68	3.1e-16	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	132 - 200	4.4e-14	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	254 - 349	5.5e-20	P-type ATPase actuator domain
Hydrolase	PF00702	474 - 797	8.2e-14	haloacid dehalogenase-like hydrolase
Cation_ATPase	PF13246	515 - 686	2.3e-29	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	868 - 1047	5.3e-45	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29900 AT4G29900 AT5G57110 AT5G57110 AT5G57110
fragaria_vesca	FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940
malus_domestica	MD13G1241000.v1.1 MD16G1245600.v1.1 MD16G1246100.v1.1
prunus_persica	Prupe.1G072600_v2.0.a1 Prupe.8G012900_v2.0.a1
pyrus_communis	pycom13g21220
rosa_chinensis	RchiOBHm_Chr4g0398891 RchiOBHm_Chr4g0398951
rosa_laevigata	RLG00000009307 RLG00000009309 RLG00000009365
rosa_multiflora	Rmu_sc0004094.1_g000033 Rmu_ssc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343340 Rroxscaffold_5G00343930 Rroxscaffold_5G00344000
rosa_rugosa	Rorug04G0013200
rosa_samantha	Rh4AG091100 Rh4CG093100 Rh4CG099100 Rh4CG099400
rosa_wichuraiana	Rw4G007100 Rw4G007130 Rw4G007500 Rw4G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2642, 3203
AarI	CACCTGC	1 cut(s)	1072
AasI	GACNNNNNNGTC	1 cut(s)	916
Acc36I	ACCTGC	1 cut(s)	1072
Acc65I	GGTACC	2 cut(s)	1439, 3148
AccB1I	GGYRCC	2 cut(s)	1439, 3148
AccB7I	CCANNNNNTGG	1 cut(s)	2063
AccI	GTMKAC	3 cut(s)	176, 781, 2053
AccIII	TCCGGA	1 cut(s)	1300
AciI	CCGC	5 cut(s)	124, 1743, 2239, 2559, 2864
AclWI	GGATC	6 cut(s)	489, 502, 1630, 2039, 2052, 2274
AcoI	YGGCCR	3 cut(s)	1177, 1410, 2670
AcsI	RAATTY	8 cut(s)	326, 447, 1229, 1672, 2525, 2913, 2924, 2948
AcuI	CTGAAG	2 cut(s)	2457, 3002
AfaI	GTAC	7 cut(s)	1340, 1377, 1441, 2419, 2604, 3015, 3150
AfeI	AGCGCT	1 cut(s)	606
AfiI	CCNNNNNNNGG	6 cut(s)	860, 1011, 1598, 2063, 2714, 2785
AflIII	ACRYGT	2 cut(s)	784, 2332
AhdI	GACNNNNNGTC	1 cut(s)	67
AjiI	CACGTC	1 cut(s)	785
AjnI	CCWGG	4 cut(s)	451, 1685, 2056, 2933
AjuI	GAANNNNNNNTTGG	4 cut(s)	298, 318, 330, 350
AloI	GAACNNNNNNTCC	2 cut(s)	2112, 2144
Alw21I	GWGCWC	2 cut(s)	235, 2662
Alw26I	GTCTC	5 cut(s)	125, 1589, 1695, 2071, 2115
AlwI	GGATC	6 cut(s)	489, 502, 1630, 2039, 2052, 2274
AlwNI	CAGNNNCTG	1 cut(s)	2626
Aor13HI	TCCGGA	1 cut(s)	1300
Aor51HI	AGCGCT	1 cut(s)	606
ApeKI	GCWGC	8 cut(s)	254, 388, 587, 654, 966, 1796, 1853, 2582
ApoI	RAATTY	8 cut(s)	326, 447, 1229, 1672, 2525, 2913, 2924, 2948
ArsI	GACNNNNNNTTYG	4 cut(s)	1523, 1555, 3202, 3234
AseI	ATTAAT	2 cut(s)	1017, 2571
Asp700I	GAANNNNTTC	3 cut(s)	951, 1962, 2216
Asp718I	GGTACC	2 cut(s)	1439, 3148
AspLEI	GCGC	2 cut(s)	607, 1089
AspS9I	GGNCC	2 cut(s)	1995, 2788
AsuC2I	CCSGG	1 cut(s)	511
AsuNHI	GCTAGC	1 cut(s)	1043
AvaII	GGWCC	1 cut(s)	2788
AxyI	CCTNAGG	1 cut(s)	2318
BaeGI	GKGCMC	1 cut(s)	1657
BaeI	ACNNNNGTAYC	2 cut(s)	2409, 2442
BalI	TGGCCA	2 cut(s)	1179, 2672
BamHI	GGATCC	2 cut(s)	494, 2044
BanI	GGYRCC	2 cut(s)	1439, 3148
BanII	GRGCYC	2 cut(s)	20, 1409
BarI	GAAGNNNNNNTAC	2 cut(s)	1764, 1796
BbsI	GAAGAC	2 cut(s)	1062, 2209
Bbv12I	GWGCWC	2 cut(s)	235, 2662
BbvI	GCAGC	8 cut(s)	241, 400, 574, 666, 953, 1783, 1865, 2594
BceAI	ACGGC	2 cut(s)	111, 156
BciT130I	CCWGG	4 cut(s)	453, 1687, 2058, 2935
BciVI	GTATCC	1 cut(s)	2641
BclI	TGATCA	2 cut(s)	844, 1843
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	5 cut(s)	125, 1589, 1695, 2071, 2115
BfaI	CTAG	6 cut(s)	350, 903, 1044, 2663, 2844, 3180
BfmI	CTRYAG	4 cut(s)	386, 719, 1932, 2004
BfoI	RGCGCY	1 cut(s)	608
BfuAI	ACCTGC	1 cut(s)	1072
BfuI	GTATCC	1 cut(s)	2641
BglII	AGATCT	2 cut(s)	559, 2182
BisI	GCNGC	9 cut(s)	255, 389, 588, 655, 967, 1797, 1854, 2559, 2583
BlsI	GCNGC	9 cut(s)	256, 390, 589, 656, 968, 1798, 1855, 2560, 2584
Bme1390I	CCNGG	5 cut(s)	453, 511, 1687, 2058, 2935
Bme18I	GGWCC	1 cut(s)	2788
BmeRI	GACNNNNNGTC	1 cut(s)	67
BmgBI	CACGTC	1 cut(s)	785
BmgT120I	GGNCC	2 cut(s)	1995, 2788
BmiI	GGNNCC	7 cut(s)	496, 852, 1252, 1441, 2046, 2727, 3150
BmrFI	CCNGG	5 cut(s)	453, 511, 1687, 2058, 2935
BmsI	GCATC	3 cut(s)	1056, 2059, 2356
BmtI	GCTAGC	1 cut(s)	1047
BoxI	GACNNNNGTC	2 cut(s)	1466, 2394
BpiI	GAAGAC	2 cut(s)	1062, 2209
BplI	GAGNNNNNCTC	2 cut(s)	2249, 2281
BpmI	CTGGAG	3 cut(s)	553, 2139, 2370
Bpu10I	CCTNAGC	1 cut(s)	1315
BpuEI	CTTGAG	1 cut(s)	1643
BpuMI	CCSGG	1 cut(s)	511
BsaAI	YACGTR	1 cut(s)	1379
BsaBI	GATNNNNATC	1 cut(s)	2181
BsaI	GGTCTC	1 cut(s)	1695
BsaJI	CCNNGG	5 cut(s)	412, 509, 521, 1371, 2809
BsaWI	WCCGGW	3 cut(s)	171, 1300, 3145
BsaXI	ACNNNNNCTCC	8 cut(s)	626, 656, 2058, 2088, 2112, 2142, 2665, 2695
Bsc4I	CCNNNNNNNGG	6 cut(s)	860, 1011, 1598, 2063, 2714, 2785
Bse21I	CCTNAGG	1 cut(s)	2318
Bse3DI	GCAATG	4 cut(s)	657, 1557, 1585, 1863
Bse8I	GATNNNNATC	1 cut(s)	2181
BseAI	TCCGGA	1 cut(s)	1300
BseBI	CCWGG	4 cut(s)	453, 1687, 2058, 2935
BseDI	CCNNGG	5 cut(s)	412, 509, 521, 1371, 2809
BseGI	GGATG	5 cut(s)	644, 1674, 2464, 2529, 2950
BseJI	GATNNNNATC	1 cut(s)	2181
BseLI	CCNNNNNNNGG	6 cut(s)	860, 1011, 1598, 2063, 2714, 2785
BseMI	GCAATG	4 cut(s)	657, 1557, 1585, 1863
BseMII	CTCAG	5 cut(s)	1577, 1584, 2247, 2412, 2667
BseRI	GAGGAG	2 cut(s)	80, 1130
BseSI	GKGCMC	1 cut(s)	1657
BseXI	GCAGC	8 cut(s)	241, 400, 574, 666, 953, 1783, 1865, 2594
BseYI	CCCAGC	1 cut(s)	607
BsgI	GTGCAG	1 cut(s)	2358
Bsh1285I	CGRYCG	1 cut(s)	118
BshNI	GGYRCC	2 cut(s)	1439, 3148
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	2 cut(s)	235, 2662
BslFI	GGGAC	4 cut(s)	1137, 2289, 2343, 2511
BslI	CCNNNNNNNGG	6 cut(s)	860, 1011, 1598, 2063, 2714, 2785
BsmAI	GTCTC	5 cut(s)	125, 1589, 1695, 2071, 2115
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	4 cut(s)	1137, 2289, 2343, 2511
Bso31I	GGTCTC	1 cut(s)	1695
Bsp1286I	GDGCHC	5 cut(s)	20, 235, 1409, 1657, 2662
Bsp13I	TCCGGA	1 cut(s)	1300
Bsp143I	GATC	9 cut(s)	494, 559, 805, 844, 1622, 1843, 2044, 2182, 2279
BspACI	CCGC	5 cut(s)	124, 1743, 2239, 2559, 2864
BspCNI	CTCAG	5 cut(s)	1576, 1585, 2248, 2413, 2668
BspEI	TCCGGA	1 cut(s)	1300
BspLI	GGNNCC	7 cut(s)	496, 852, 1252, 1441, 2046, 2727, 3150
BspMAI	CTGCAG	3 cut(s)	390, 723, 2008
BspMI	ACCTGC	1 cut(s)	1072
BspOI	GCTAGC	1 cut(s)	1047
BspPI	GGATC	6 cut(s)	489, 502, 1630, 2039, 2052, 2274
BspT107I	GGYRCC	2 cut(s)	1439, 3148
BspTNI	GGTCTC	1 cut(s)	1695
BsrDI	GCAATG	4 cut(s)	657, 1557, 1585, 1863
BssECI	CCNNGG	5 cut(s)	412, 509, 521, 1371, 2809
BssMI	GATC	9 cut(s)	494, 559, 805, 844, 1622, 1843, 2044, 2182, 2279
BssNAI	GTATAC	1 cut(s)	177
BssT1I	CCWWGG	2 cut(s)	521, 1371
Bst1107I	GTATAC	1 cut(s)	177
Bst2UI	CCWGG	4 cut(s)	453, 1687, 2058, 2935
Bst4CI	ACNGT	7 cut(s)	50, 119, 1132, 1465, 2548, 2788, 3061
Bst6I	CTCTTC	2 cut(s)	2241, 3220
BstBAI	YACGTR	1 cut(s)	1379
BstC8I	GCNNGC	7 cut(s)	20, 105, 553, 1045, 2004, 2313, 2866
BstEII	GGTNACC	1 cut(s)	1000
BstF5I	GGATG	5 cut(s)	644, 1674, 2464, 2529, 2950
BstH2I	RGCGCY	1 cut(s)	608
BstHHI	GCGC	2 cut(s)	607, 1089
BstKTI	GATC	9 cut(s)	497, 562, 808, 847, 1625, 1846, 2047, 2185, 2282
BstMAI	GTCTC	5 cut(s)	125, 1589, 1695, 2071, 2115
BstMBI	GATC	9 cut(s)	494, 559, 805, 844, 1622, 1843, 2044, 2182, 2279
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	6 cut(s)	251, 593, 602, 912, 1367, 2003
BstNI	CCWGG	4 cut(s)	453, 1687, 2058, 2935
BstNSI	RCATGY	5 cut(s)	107, 239, 1395, 1485, 2336
BstPAI	GACNNNNGTC	2 cut(s)	1466, 2394
BstPI	GGTNACC	1 cut(s)	1000
BstSCI	CCNGG	5 cut(s)	451, 509, 1685, 2056, 2933
BstSFI	CTRYAG	4 cut(s)	386, 719, 1932, 2004
BstSLI	GKGCMC	1 cut(s)	1657
BstSNI	TACGTA	1 cut(s)	1379
BstV1I	GCAGC	8 cut(s)	241, 400, 574, 666, 953, 1783, 1865, 2594
BstV2I	GAAGAC	2 cut(s)	1062, 2209
BstX2I	RGATCY	4 cut(s)	494, 559, 2044, 2182
BstXI	CCANNNNNNTGG	2 cut(s)	1288, 2093
BstYI	RGATCY	4 cut(s)	494, 559, 2044, 2182
BstZ17I	GTATAC	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	2318
BsuI	GTATCC	1 cut(s)	2641
BtgZI	GCGATG	1 cut(s)	3085
BtrI	CACGTC	1 cut(s)	785
BtsCI	GGATG	5 cut(s)	644, 1674, 2464, 2529, 2950
BtsI	GCAGTG	4 cut(s)	1432, 1655, 2079, 3009
BveI	ACCTGC	1 cut(s)	1072
Cac8I	GCNNGC	7 cut(s)	20, 105, 553, 1045, 2004, 2313, 2866
CaiI	CAGNNNCTG	1 cut(s)	2626
CfoI	GCGC	2 cut(s)	607, 1089
Cfr13I	GGNCC	2 cut(s)	1995, 2788
CseI	GACGC	1 cut(s)	2508
CsiI	ACCWGGT	2 cut(s)	1685, 2056
Csp6I	GTAC	7 cut(s)	1339, 1376, 1440, 2418, 2603, 3014, 3149
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CviQI	GTAC	7 cut(s)	1339, 1376, 1440, 2418, 2603, 3014, 3149
DpnI	GATC	9 cut(s)	496, 561, 807, 846, 1624, 1845, 2046, 2184, 2281
DpnII	GATC	9 cut(s)	494, 559, 805, 844, 1622, 1843, 2044, 2182, 2279
DrdI	GACNNNNNNGTC	1 cut(s)	916
DriI	GACNNNNNGTC	1 cut(s)	67
DseDI	GACNNNNNNGTC	1 cut(s)	916
EaeI	YGGCCR	3 cut(s)	1177, 1410, 2670
Eam1104I	CTCTTC	2 cut(s)	2241, 3220
Eam1105I	GACNNNNNGTC	1 cut(s)	67
EarI	CTCTTC	2 cut(s)	2241, 3220
EciI	GGCGGA	2 cut(s)	113, 2254
Eco105I	TACGTA	1 cut(s)	1379
Eco130I	CCWWGG	2 cut(s)	521, 1371
Eco147I	AGGCCT	3 cut(s)	411, 1308, 1370
Eco24I	GRGCYC	2 cut(s)	20, 1409
Eco31I	GGTCTC	1 cut(s)	1695
Eco32I	GATATC	2 cut(s)	1536, 2446
Eco47I	GGWCC	1 cut(s)	2788
Eco47III	AGCGCT	1 cut(s)	606
Eco57I	CTGAAG	2 cut(s)	2457, 3002
Eco81I	CCTNAGG	1 cut(s)	2318
Eco91I	GGTNACC	1 cut(s)	1000
EcoO65I	GGTNACC	1 cut(s)	1000
EcoRI	GAATTC	3 cut(s)	447, 2924, 2948
EcoRII	CCWGG	4 cut(s)	451, 1685, 2056, 2933
EcoRV	GATATC	2 cut(s)	1536, 2446
EcoT14I	CCWWGG	2 cut(s)	521, 1371
EcoT38I	GRGCYC	2 cut(s)	20, 1409
ErhI	CCWWGG	2 cut(s)	521, 1371
Esp3I	CGTCTC	1 cut(s)	125
FalI	AAGNNNNNCTT	2 cut(s)	1505, 1537
FaqI	GGGAC	4 cut(s)	1137, 2289, 2343, 2511
FauI	CCCGC	1 cut(s)	2857
FauNDI	CATATG	2 cut(s)	490, 1948
FbaI	TGATCA	2 cut(s)	844, 1843
FblI	GTMKAC	3 cut(s)	176, 781, 2053
Fnu4HI	GCNGC	9 cut(s)	255, 389, 588, 655, 967, 1797, 1854, 2559, 2583
FokI	GGATG	5 cut(s)	651, 1681, 2471, 2516, 2957
FriOI	GRGCYC	2 cut(s)	20, 1409
Fsp4HI	GCNGC	9 cut(s)	255, 389, 588, 655, 967, 1797, 1854, 2559, 2583
FspBI	CTAG	6 cut(s)	350, 903, 1044, 2663, 2844, 3180
GlaI	GCGC	2 cut(s)	606, 1088
GluI	GCNGC	9 cut(s)	255, 389, 588, 655, 967, 1797, 1854, 2559, 2583
GsaI	CCCAGC	1 cut(s)	611
GsuI	CTGGAG	3 cut(s)	553, 2139, 2370
HaeII	RGCGCY	1 cut(s)	608
HgaI	GACGC	1 cut(s)	2508
HhaI	GCGC	2 cut(s)	607, 1089
Hin6I	GCGC	2 cut(s)	605, 1087
HinP1I	GCGC	2 cut(s)	605, 1087
HincII	GTYRAC	1 cut(s)	2054
HindII	GTYRAC	1 cut(s)	2054
HindIII	AAGCTT	4 cut(s)	549, 1661, 1871, 2297
Hpy166II	GTNNAC	5 cut(s)	177, 782, 1976, 2054, 3051
Hpy188III	TCNNGA	8 cut(s)	363, 532, 688, 727, 1301, 1592, 1885, 2831
Hpy8I	GTNNAC	5 cut(s)	177, 782, 1976, 2054, 3051
Hpy99I	CGWCG	6 cut(s)	62, 65, 76, 168, 1868, 3222
HpyAV	CCTTC	8 cut(s)	1117, 1298, 1547, 1630, 2201, 2319, 2476, 2715
HpyCH4III	ACNGT	7 cut(s)	50, 119, 1132, 1465, 2548, 2788, 3061
HpyCH4IV	ACGT	3 cut(s)	215, 784, 1378
HpyF10VI	GCNNNNNNNGC	6 cut(s)	251, 593, 602, 912, 1367, 2003
HpySE526I	ACGT	3 cut(s)	215, 784, 1378
HspAI	GCGC	2 cut(s)	605, 1087
Kpn2I	TCCGGA	1 cut(s)	1300
KpnI	GGTACC	2 cut(s)	1443, 3152
Ksp22I	TGATCA	2 cut(s)	844, 1843
Kzo9I	GATC	9 cut(s)	494, 559, 805, 844, 1622, 1843, 2044, 2182, 2279
LmnI	GCTCC	3 cut(s)	1250, 2374, 2657
Lsp1109I	GCAGC	8 cut(s)	241, 400, 574, 666, 953, 1783, 1865, 2594
LweI	GCATC	3 cut(s)	1056, 2059, 2356
MabI	ACCWGGT	2 cut(s)	1685, 2056
MaeI	CTAG	6 cut(s)	350, 903, 1044, 2663, 2844, 3180
MaeII	ACGT	3 cut(s)	215, 784, 1378
MalI	GATC	9 cut(s)	496, 561, 807, 846, 1624, 1845, 2046, 2184, 2281
MboI	GATC	9 cut(s)	494, 559, 805, 844, 1622, 1843, 2044, 2182, 2279
MfeI	CAATTG	2 cut(s)	333, 891
MflI	RGATCY	4 cut(s)	494, 559, 2044, 2182
MhlI	GDGCHC	5 cut(s)	20, 235, 1409, 1657, 2662
MlsI	TGGCCA	2 cut(s)	1179, 2672
MluNI	TGGCCA	2 cut(s)	1179, 2672
MlyI	GAGTC	8 cut(s)	13, 77, 908, 926, 932, 1119, 1496, 3193
MmeI	TCCRAC	5 cut(s)	110, 522, 1991, 2044, 2563
Mox20I	TGGCCA	2 cut(s)	1179, 2672
MroI	TCCGGA	1 cut(s)	1300
MroXI	GAANNNNTTC	3 cut(s)	951, 1962, 2216
MscI	TGGCCA	2 cut(s)	1179, 2672
MslI	CAYNNNNRTG	4 cut(s)	578, 686, 1286, 2155
Msp20I	TGGCCA	2 cut(s)	1179, 2672
MspR9I	CCNGG	5 cut(s)	453, 511, 1687, 2058, 2935
MunI	CAATTG	2 cut(s)	333, 891
MvaI	CCWGG	4 cut(s)	453, 1687, 2058, 2935
MwoI	GCNNNNNNNGC	6 cut(s)	251, 593, 602, 912, 1367, 2003
NciI	CCSGG	1 cut(s)	511
NdeI	CATATG	2 cut(s)	490, 1948
NdeII	GATC	9 cut(s)	494, 559, 805, 844, 1622, 1843, 2044, 2182, 2279
NheI	GCTAGC	1 cut(s)	1043
NlaIV	GGNNCC	7 cut(s)	496, 852, 1252, 1441, 2046, 2727, 3150
NmeAIII	GCCGAG	1 cut(s)	1388
NmuCI	GTSAC	5 cut(s)	688, 701, 1264, 1276, 3004
NspI	RCATGY	5 cut(s)	107, 239, 1395, 1485, 2336
PaeI	GCATGC	1 cut(s)	107
PaqCI	CACCTGC	1 cut(s)	1072
PceI	AGGCCT	3 cut(s)	411, 1308, 1370
PciI	ACATGT	1 cut(s)	2332
PdmI	GAANNNNTTC	3 cut(s)	951, 1962, 2216
PfeI	GAWTC	8 cut(s)	168, 272, 730, 2177, 2635, 2764, 2840, 3022
PflMI	CCANNNNNTGG	1 cut(s)	2063
PfoI	TCCNGGA	1 cut(s)	451
PkrI	GCNGC	9 cut(s)	256, 390, 589, 656, 968, 1798, 1855, 2560, 2584
PleI	GAGTC	8 cut(s)	12, 76, 907, 925, 932, 1119, 1496, 3192
PpsI	GAGTC	8 cut(s)	12, 76, 907, 925, 932, 1119, 1496, 3192
Ppu21I	YACGTR	1 cut(s)	1379
PscI	ACATGT	1 cut(s)	2332
PshAI	GACNNNNGTC	2 cut(s)	1466, 2394
PshBI	ATTAAT	2 cut(s)	1017, 2571
PsiI	TTATAA	2 cut(s)	2642, 3203
Psp6I	CCWGG	4 cut(s)	451, 1685, 2056, 2933
PspEI	GGTNACC	1 cut(s)	1000
PspFI	CCCAGC	1 cut(s)	607
PspGI	CCWGG	4 cut(s)	451, 1685, 2056, 2933
PspN4I	GGNNCC	7 cut(s)	496, 852, 1252, 1441, 2046, 2727, 3150
PspPI	GGNCC	2 cut(s)	1995, 2788
PstI	CTGCAG	3 cut(s)	390, 723, 2008
PstNI	CAGNNNCTG	1 cut(s)	2626
PsuI	RGATCY	4 cut(s)	494, 559, 2044, 2182
RsaI	GTAC	7 cut(s)	1340, 1377, 1441, 2419, 2604, 3015, 3150
RsaNI	GTAC	7 cut(s)	1339, 1376, 1440, 2418, 2603, 3014, 3149
RseI	CAYNNNNRTG	4 cut(s)	578, 686, 1286, 2155
SalI	GTCGAC	1 cut(s)	2052
SatI	GCNGC	9 cut(s)	255, 389, 588, 655, 967, 1797, 1854, 2559, 2583
Sau3AI	GATC	9 cut(s)	494, 559, 805, 844, 1622, 1843, 2044, 2182, 2279
Sau96I	GGNCC	2 cut(s)	1995, 2788
SchI	GAGTC	8 cut(s)	13, 77, 908, 926, 932, 1119, 1496, 3193
ScrFI	CCNGG	5 cut(s)	453, 511, 1687, 2058, 2935
SduI	GDGCHC	5 cut(s)	20, 235, 1409, 1657, 2662
SexAI	ACCWGGT	2 cut(s)	1685, 2056
SfaNI	GCATC	3 cut(s)	1056, 2059, 2356
SfcI	CTRYAG	4 cut(s)	386, 719, 1932, 2004
SinI	GGWCC	1 cut(s)	2788
SmiMI	CAYNNNNRTG	4 cut(s)	578, 686, 1286, 2155
SmlI	CTYRAG	1 cut(s)	1658
SmoI	CTYRAG	1 cut(s)	1658
SnaBI	TACGTA	1 cut(s)	1379
SphI	GCATGC	1 cut(s)	107
SseBI	AGGCCT	3 cut(s)	411, 1308, 1370
SsiI	CCGC	5 cut(s)	124, 1743, 2239, 2559, 2864
SspI	AATATT	2 cut(s)	2518, 3213
SspMI	CTAG	6 cut(s)	350, 903, 1044, 2663, 2844, 3180
StuI	AGGCCT	3 cut(s)	411, 1308, 1370
StyD4I	CCNGG	5 cut(s)	451, 509, 1685, 2056, 2933
StyI	CCWWGG	2 cut(s)	521, 1371
TaaI	ACNGT	7 cut(s)	50, 119, 1132, 1465, 2548, 2788, 3061
TaiI	ACGT	3 cut(s)	218, 787, 1381
TaqI	TCGA	6 cut(s)	74, 114, 166, 2053, 2719, 3033
TatI	WGTACW	1 cut(s)	3013
TauI	GCSGC	1 cut(s)	2561
TfiI	GAWTC	8 cut(s)	168, 272, 730, 2177, 2635, 2764, 2840, 3022
TseFI	GTSAC	5 cut(s)	688, 701, 1264, 1276, 3004
TseI	GCWGC	8 cut(s)	254, 388, 587, 654, 966, 1796, 1853, 2582
Tsp45I	GTSAC	5 cut(s)	688, 701, 1264, 1276, 3004
TspDTI	ATGAA	9 cut(s)	1099, 1685, 1697, 1766, 1785, 1965, 2518, 2937, 2961
TspGWI	ACGGA	4 cut(s)	265, 1646, 2210, 3206
Van91I	CCANNNNNTGG	1 cut(s)	2063
VpaK11BI	GGWCC	1 cut(s)	2788
VspI	ATTAAT	2 cut(s)	1017, 2571
XapI	RAATTY	8 cut(s)	326, 447, 1229, 1672, 2525, 2913, 2924, 2948
XceI	RCATGY	5 cut(s)	107, 239, 1395, 1485, 2336
XcmI	CCANNNNNNNNNTGG	1 cut(s)	528
XmiI	GTMKAC	3 cut(s)	176, 781, 2053
XmnI	GAANNNNTTC	3 cut(s)	951, 1962, 2216
XspI	CTAG	6 cut(s)	350, 903, 1044, 2663, 2844, 3180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.