Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003103

Physical Location & Seq

Genomic Coordinates Reverse (-)

51631479 .. 51654688

Gene Structure 23210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009365

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3324 bp

ATGGCGCCGGCCGGTGGAGACTCTTCGCTCTCCAACAGCGAAATCTCAGAGAAAGCGTTGGAAGCAGACAAGCAGTTTGACTTTACGGTCGCGTGGATCCTGAAGTGGACCTCAATAGTCAATATAGCACTGTGCTGTTCGGACCAACATATGAGTCACCCAATAAGCAGCTCGCCTGACCGACCAAGCCACGATTTAGAGGCCGGAAGCAGTCGCTCAGGCAACGTGAACGACGATGAGTCGTGGACCAATCCTTTTGATGTGAACAGTACCAAGTATGCTTCTGTTGAACGCCTCAAGCGTTGGAGGAAAGCAGCACTTGTACTGAATTCTTCTCGCCGATTCCGATACACTCTCAACTTGAAAAAGGAAGAAGAGAAGAAACAGACACTGAGGAAGATAAGAGCACATGCACAAGCCATACGAGCTGCATCTTTATACGCAGAAGTTGGAAATCCCCTGCAAGGAACTTTACAACCGATACCATCCGCTGCTGGCGATTTTCAGATTGCCCATGAGCAACTTGTTTCAGTGATCAGGGACCGTGACTTACATGCTATGCAGCAATATGGGGGAGTCAGTGGCTTAGCAGATTTATTGAAAACCAATCTACACAAGGGAATTCTTGGTGATAGTGCTGATTGTCTAAACCGGAAAAATGCATTTGGATCCAACACATATCCTCCTGGAAGAGCAAGGAGTTTCTGGACTATTCTTTGGGAAGCCTGGCAAGACCTTACTCTGATCATTTTGATGATAGCAGCAGTGGCTACCTTAGGGCTACATATAAATATGAAGGATATGAAGGAGGAATGGTATGGTGGTGGCAGCATTGCTTTAGCAGTTATTCTTGTCATTGTTGTCATAGCCATTAGTGATTACAATGAATCCCTGCGCTTCCAGAGTTTGATTGCAGAGAGGAGAAATATACATTTAGAGGTCATCAGAGGTGGTAGACGAGTTGAGGTTTCTATTTATGATATTGTCGTTGGTGATGTTGTACCGCTTAGCATTGGTGATCAGGTCCCTGCTGATGGTATTTTAATCACTGGCTACTCACTTGCTACAGAGGAGACCCAAATCATTGGGGATAGCAAGATTGTTCACAAGGACTGCAAGGACCCATTTCTGATGTCTGGCAGCAAAATTGCATATGGGAGTGGTACAATGCTGGTAACTAGTGTGGGGATGAATACTGAATGGGGTTTGCTCATGGCTAGTATTTCAGAAGATATTGGTGAAGAAACACCTGTGCAGGTGGGTTTAAATGGAGTTGCTACTGTCATTGGCCTTGTTGGGGTTGCAATAGCTTTTTTCGTCCTCAATGTCGATATAGTTAGATTATATACTGGCCATTCAAGCAATCCAGATGGAACTATTCAGTTTGTAGCCGGCAAGACTAAATTTGGAAGAGCCATTCAATTTAGTATCATTGTAGTTACCAATGTAATGGTTGCTGTACCTGAAGGGCTCCCTATTGCTGTCACGTTAATCCTTGCCTATTCCATGACCAAAATGATGGCAGATAAGGTCTTGGTGCGGAGGCAATCTGCATGCGAGGCTATAGGCTCTGCCACAACTATTTGCATTGATAAGACCGGACTTTTAACTTCGAACCAGATGACTATTGTTGAGGCTTATGTTGGTGGGAAGAAAATCTATCCTTCAGACAATAAGTCGCGATTGTCTCCAATGCTATGGTCCTTAATTATTGAAAGCATTGCACAGAACACAAATGGCAGTGTCTACATGCCTGAGAATGGTGGTGATGTAGAGGTTTATGGATCACCAACTGAAAAAGCAATTCTGCGCTGGGGGATTAAGATTGGAATGAATTTTGGAGCCACGAAGTCTGAATCTACAGTTCTTCATGCGCTCGCATTTAACTCGGTGAAGAAACGAAGTGCTGTTGCACTTAAATTGGCCAATTCTCAAGTTCATATACACTGGAAAGGGGCTGCTGAAACAATCTTGGCCTCATGCACAAAGTACATTGATGCTAATGATCACTTGGTAGCAATGGATGAAGATAAGTTAATGTTTTTCAATGAAGCTATTGAGGGTATGGCTTCTGGAAGTCTGCGGTGTGTTGCTATTGCATATAGGTTATACGAGTTTGAAAATGTTCCGACTGACGAACTAGTTCAGTGGGCATTACCTGAGGATGACCTTATTTTACTTGCTATTGTTGGTATAGAGGATCCTTGTCAGCCAGGAGTCAGAGATGCTGTGCGACAATGCCAAAATGCTGGTGTTAAGGTATGCATGGTTACGGGTGACAATCTTCAAACAGCAAAAGCAATTGCTTTGGAGTGTGGCATACTTGGTTCCGAAGCAGATGCTACTGAACAAACTATCATTGAAGGAAGAGTATTTCGTGCCTTTTCTGATAAGCAAAGAGAAGATTTAGCTGAGATGATATCAGTGATGGGACGATCTTCGCCCAATGACAAGCTTCTTCTTGTGCAAGCACTGAGGAAAAGGGGACATGTTGTTGCTGTCACTGGTGATGGTTGTAATGATGCTCCTGCATTATATGAGGCCGATATTGGTCTTGCTATGGGTATTCAAGGGGCTGAAGTAGCTAAAGAGAGTTCAGATATAATCATCTTGGATGATAACTTTTCTACAATTGTGAAGGCTATCAAATGGGGTCGATCTGTATATTCAAATATTCAGAAATTTACCCAGTTCCATCTTACAGTTGGACTTGCAGCATTAATCATAAATGTCATTGCAGAAGTTTCCTCTGGTTCAGCTCCATTAAATGCTGTGCAGATTCTCTGGGTAAGCATTATCATGGACACTCAAGGAGCACTAGTATTGCGTACTGAGCCACCATCTGATAACCTGATGCGGAAGCCTCCTGTTGATCGAAAGGCACCTCTTATTACAAATATAGTGTGGAGGAACTTGTTGGTTCAGTCTTTCTACCAAGTCACTATCTTGCTTATTCTAAATTTCCACGGAAGGAAATTGCTGAATTTGGAACTTGCTGATTACAATGTGATGAATACAATGATATTCAATGCTTTTGTCCTTTGTCAAATTTTCAATGAATTCAATGCTCGAAAGCCCGAGGAATATAACATTTTCAAAGGAATTACTTCAAACTATCTCTTTGTGGGAATAGTGGGAATAACTCTTGTGCTTCAGATTGTTGCCATTGAGTTTCTTGGGAAATTTACTTCAACTGTGAGACTTAACTTGAAGCAGTGGCTGATTTCCATCATCATTGGTTTTATCAGTTGGCCCCTTGATGCTATCGGGAAACTCGTACCAGTTCCAAAAACTCCCTTCATCAAGTTTGCCTTGAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1108

Amino Acids

121.17

Weight (kDa)

6.13

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	84 - 126	4.5e-16	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	190 - 256	4.5e-12	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	313 - 407	2.3e-15	P-type ATPase actuator domain
Cation_ATPase	PF13246	581 - 738	1.8e-27	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	716 - 848	3.7e-14	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	920 - 1093	8.7e-42	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29900 AT4G29900 AT5G57110 AT5G57110 AT5G57110
fragaria_vesca	FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940
malus_domestica	MD13G1241000.v1.1 MD16G1245600.v1.1 MD16G1246100.v1.1
prunus_persica	Prupe.1G072600_v2.0.a1 Prupe.8G012900_v2.0.a1
pyrus_communis	pycom13g21220
rosa_chinensis	RchiOBHm_Chr4g0398891 RchiOBHm_Chr4g0398951
rosa_laevigata	RLG00000009307 RLG00000009309 RLG00000009365
rosa_multiflora	Rmu_sc0004094.1_g000033 Rmu_ssc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343340 Rroxscaffold_5G00343930 Rroxscaffold_5G00344000
rosa_rugosa	Rorug04G0013200
rosa_samantha	Rh4AG091100 Rh4CG093100 Rh4CG099100 Rh4CG099400
rosa_wichuraiana	Rw4G007100 Rw4G007130 Rw4G007500 Rw4G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1246
AasI	GACNNNNNNGTC	1 cut(s)	86
Acc36I	ACCTGC	1 cut(s)	1246
AccB1I	GGYRCC	2 cut(s)	4, 2881
AccI	GTMKAC	2 cut(s)	955, 1746
AccII	CGCG	2 cut(s)	92, 1681
AciI	CCGC	5 cut(s)	489, 1004, 1540, 2083, 2857
AclWI	GGATC	7 cut(s)	91, 104, 663, 676, 1792, 2195, 2208
AcoI	YGGCCR	3 cut(s)	9, 1351, 1923
AcuI	CTGAAG	5 cut(s)	122, 1485, 1650, 2598, 3137
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	8 cut(s)	271, 324, 1002, 1165, 1461, 1991, 2830, 3279
AfiI	CCNNNNNNNGG	5 cut(s)	14, 464, 1034, 1297, 1760
AflIII	ACRYGT	1 cut(s)	2488
AhdI	GACNNNNNGTC	2 cut(s)	238, 1675
AhlI	ACTAGT	3 cut(s)	1178, 2140, 2818
AjnI	CCWGG	3 cut(s)	685, 725, 2212
AluBI	AGCT	8 cut(s)	171, 428, 1310, 2054, 2411, 2455, 2585, 2759
AluI	AGCT	8 cut(s)	171, 428, 1310, 2054, 2411, 2455, 2585, 2759
Alw21I	GWGCWC	2 cut(s)	409, 2818
Alw26I	GTCTC	4 cut(s)	12, 1067, 1692, 3193
AlwI	GGATC	7 cut(s)	91, 104, 663, 676, 1792, 2195, 2208
AlwNI	CAGNNNCTG	2 cut(s)	391, 3220
Ama87I	CYCGRG	1 cut(s)	3077
AoxI	GGCC	8 cut(s)	9, 201, 1288, 1351, 1923, 1974, 2541, 3251
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AseI	ATTAAT	1 cut(s)	2720
Asp700I	GAANNNNTTC	3 cut(s)	2124, 2142, 3106
AspLEI	GCGC	4 cut(s)	7, 897, 1812, 1876
AspS9I	GGNCC	8 cut(s)	108, 142, 246, 541, 1024, 1120, 1701, 3252
AsuII	TTCGAA	1 cut(s)	1613
AvaI	CYCGRG	1 cut(s)	3077
AvaII	GGWCC	7 cut(s)	108, 142, 246, 541, 1024, 1120, 1701
AxyI	CCTNAGG	2 cut(s)	775, 2160
BalI	TGGCCA	2 cut(s)	1353, 1925
BamHI	GGATCC	3 cut(s)	96, 668, 2200
BanI	GGYRCC	2 cut(s)	4, 2881
BanII	GRGCYC	1 cut(s)	1473
Bbv12I	GWGCWC	2 cut(s)	409, 2818
BccI	CCATC	9 cut(s)	493, 1028, 1364, 1513, 2422, 2504, 2703, 2848, 3236
BcgI	CGANNNNNNTGC	4 cut(s)	1869, 1903, 2321, 2355
BciT130I	CCWGG	3 cut(s)	687, 727, 2214
BclI	TGATCA	4 cut(s)	534, 744, 1018, 2005
BcoDI	GTCTC	4 cut(s)	12, 1067, 1692, 3193
BcuI	ACTAGT	3 cut(s)	1178, 2140, 2818
BfaI	CTAG	4 cut(s)	1179, 1218, 2141, 2819
BfmI	CTRYAG	3 cut(s)	1065, 1563, 1860
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	1246
BlpI	GCTNAGC	2 cut(s)	586, 1007
Bme1390I	CCNGG	3 cut(s)	687, 727, 2214
Bme18I	GGWCC	7 cut(s)	108, 142, 246, 541, 1024, 1120, 1701
BmeRI	GACNNNNNGTC	2 cut(s)	238, 1675
BmeT110I	CYCGRG	1 cut(s)	3077
BmgT120I	GGNCC	8 cut(s)	108, 142, 246, 541, 1024, 1120, 1701, 3252
BmrFI	CCNGG	3 cut(s)	687, 727, 2214
BmrI	ACTGGG	1 cut(s)	2683
BmsI	GCATC	7 cut(s)	440, 1987, 2215, 2329, 2512, 2844, 3250
BmuI	ACTGGG	1 cut(s)	2683
Bpu10I	CCTNAGC	1 cut(s)	217
Bpu1102I	GCTNAGC	2 cut(s)	586, 1007
Bpu14I	TTCGAA	1 cut(s)	1613
BpuEI	CTTGAG	3 cut(s)	281, 1917, 2793
BsaBI	GATNNNNATC	1 cut(s)	3227
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	1067
BsaJI	CCNNGG	2 cut(s)	2965, 3078
BsaWI	WCCGGW	2 cut(s)	651, 1598
BsaXI	ACNNNNNCTCC	6 cut(s)	667, 697, 800, 830, 2805, 2835
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 464, 1034, 1297, 1760
Bse118I	RCCGGY	3 cut(s)	7, 11, 1391
Bse1I	ACTGG	6 cut(s)	1054, 1354, 1952, 2509, 2689, 3281
Bse21I	CCTNAGG	2 cut(s)	775, 2160
Bse3DI	GCAATG	4 cut(s)	831, 1719, 2025, 2733
Bse8I	GATNNNNATC	1 cut(s)	3227
BseBI	CCWGG	3 cut(s)	687, 727, 2214
BseDI	CCNNGG	2 cut(s)	2965, 3078
BseGI	GGATG	5 cut(s)	485, 1194, 2029, 2170, 2620
BseJI	GATNNNNATC	1 cut(s)	3227
BseLI	CCNNNNNNNGG	5 cut(s)	14, 464, 1034, 1297, 1760
BseMI	GCAATG	4 cut(s)	831, 1719, 2025, 2733
BseMII	CTCAG	8 cut(s)	60, 231, 383, 1746, 2151, 2403, 2465, 2823
BseNI	ACTGG	6 cut(s)	1054, 1354, 1952, 2509, 2689, 3281
BseRI	GAGGAG	2 cut(s)	934, 1085
BseX3I	CGGCCG	1 cut(s)	9
BseYI	CCCAGC	1 cut(s)	1812
BsgI	GTGCAG	2 cut(s)	1274, 2795
Bsh1236I	CGCG	2 cut(s)	92, 1681
Bsh1285I	CGRYCG	2 cut(s)	12, 90
BshFI	GGCC	8 cut(s)	11, 203, 1290, 1353, 1925, 1976, 2543, 3253
BshNI	GGYRCC	2 cut(s)	4, 2881
BsiEI	CGRYCG	2 cut(s)	12, 90
BsiHKAI	GWGCWC	2 cut(s)	409, 2818
BsiHKCI	CYCGRG	1 cut(s)	3077
BsiSI	CCGG	6 cut(s)	8, 12, 204, 652, 1392, 1599
BslFI	GGGAC	4 cut(s)	554, 1010, 2445, 2499
BslI	CCNNNNNNNGG	5 cut(s)	14, 464, 1034, 1297, 1760
BsmAI	GTCTC	4 cut(s)	12, 1067, 1692, 3193
BsmFI	GGGAC	4 cut(s)	554, 1010, 2445, 2499
BsnI	GGCC	8 cut(s)	11, 203, 1290, 1353, 1925, 1976, 2543, 3253
Bso31I	GGTCTC	1 cut(s)	1067
BsoBI	CYCGRG	1 cut(s)	3077
Bsp119I	TTCGAA	1 cut(s)	1613
Bsp1286I	GDGCHC	3 cut(s)	409, 1473, 2818
Bsp1720I	GCTNAGC	2 cut(s)	586, 1007
Bsp68I	TCGCGA	1 cut(s)	1681
BspACI	CCGC	5 cut(s)	489, 1004, 1540, 2083, 2857
BspANI	GGCC	8 cut(s)	11, 203, 1290, 1353, 1925, 1976, 2543, 3253
BspCNI	CTCAG	8 cut(s)	59, 230, 384, 1747, 2152, 2404, 2466, 2824
BspFNI	CGCG	2 cut(s)	92, 1681
BspMI	ACCTGC	1 cut(s)	1246
BspPI	GGATC	7 cut(s)	91, 104, 663, 676, 1792, 2195, 2208
BspQI	GCTCTTC	2 cut(s)	685, 1405
BspT104I	TTCGAA	1 cut(s)	1613
BspT107I	GGYRCC	2 cut(s)	4, 2881
BspTNI	GGTCTC	1 cut(s)	1067
BsrDI	GCAATG	4 cut(s)	831, 1719, 2025, 2733
BsrFI	RCCGGY	3 cut(s)	7, 11, 1391
BsrI	ACTGG	6 cut(s)	1054, 1354, 1952, 2509, 2689, 3281
BssAI	RCCGGY	3 cut(s)	7, 11, 1391
BssECI	CCNNGG	2 cut(s)	2965, 3078
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	3 cut(s)	687, 727, 2214
Bst4CI	ACNGT	8 cut(s)	88, 132, 269, 545, 1282, 1864, 2704, 3196
Bst6I	CTCTTC	5 cut(s)	28, 369, 685, 1405, 2362
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	1613
BstC8I	GCNNGC	7 cut(s)	9, 173, 496, 1393, 1555, 1878, 2469
BstDSI	CCRYGG	1 cut(s)	2965
BstF5I	GGATG	5 cut(s)	485, 1194, 2029, 2170, 2620
BstFNI	CGCG	2 cut(s)	92, 1681
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	4 cut(s)	7, 897, 1812, 1876
BstMAI	GTCTC	4 cut(s)	12, 1067, 1692, 3193
BstMCI	CGRYCG	2 cut(s)	12, 90
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 425, 767, 1359, 1559, 2582, 2833
BstNI	CCWGG	3 cut(s)	687, 727, 2214
BstNSI	RCATGY	5 cut(s)	413, 557, 1557, 1753, 2492
BstSCI	CCNGG	3 cut(s)	685, 725, 2212
BstSFI	CTRYAG	3 cut(s)	1065, 1563, 1860
BstUI	CGCG	2 cut(s)	92, 1681
BstX2I	RGATCY	3 cut(s)	96, 668, 2200
BstXI	CCANNNNNNTGG	5 cut(s)	1085, 1450, 1519, 1698, 2249
BstYI	RGATCY	3 cut(s)	96, 668, 2200
BstZI	CGGCCG	1 cut(s)	9
Bsu36I	CCTNAGG	2 cut(s)	775, 2160
BsuRI	GGCC	8 cut(s)	11, 203, 1290, 1353, 1925, 1976, 2543, 3253
BtgI	CCRYGG	1 cut(s)	2965
BtsCI	GGATG	5 cut(s)	485, 1194, 2029, 2170, 2620
BtsI	GCAGTG	3 cut(s)	771, 1747, 3221
BtuMI	TCGCGA	1 cut(s)	1681
BveI	ACCTGC	1 cut(s)	1246
Cac8I	GCNNGC	7 cut(s)	9, 173, 496, 1393, 1555, 1878, 2469
CaiI	CAGNNNCTG	2 cut(s)	391, 3220
CfoI	GCGC	4 cut(s)	7, 897, 1812, 1876
Cfr10I	RCCGGY	3 cut(s)	7, 11, 1391
Cfr13I	GGNCC	8 cut(s)	108, 142, 246, 541, 1024, 1120, 1701, 3252
Csp6I	GTAC	8 cut(s)	270, 323, 1001, 1164, 1460, 1990, 2829, 3278
CviQI	GTAC	8 cut(s)	270, 323, 1001, 1164, 1460, 1990, 2829, 3278
DinI	GGCGCC	1 cut(s)	6
DraI	TTTAAA	1 cut(s)	1266
DrdI	GACNNNNNNGTC	1 cut(s)	86
DriI	GACNNNNNGTC	2 cut(s)	238, 1675
DseDI	GACNNNNNNGTC	1 cut(s)	86
EaeI	YGGCCR	3 cut(s)	9, 1351, 1923
EagI	CGGCCG	1 cut(s)	9
Eam1104I	CTCTTC	5 cut(s)	28, 369, 685, 1405, 2362
Eam1105I	GACNNNNNGTC	2 cut(s)	238, 1675
EarI	CTCTTC	5 cut(s)	28, 369, 685, 1405, 2362
EclXI	CGGCCG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	1473
Eco31I	GGTCTC	1 cut(s)	1067
Eco32I	GATATC	1 cut(s)	2421
Eco47I	GGWCC	7 cut(s)	108, 142, 246, 541, 1024, 1120, 1701
Eco52I	CGGCCG	1 cut(s)	9
Eco57I	CTGAAG	5 cut(s)	122, 1485, 1650, 2598, 3137
Eco81I	CCTNAGG	2 cut(s)	775, 2160
Eco88I	CYCGRG	1 cut(s)	3077
EcoO109I	RGGNCCY	2 cut(s)	1024, 1120
EcoRI	GAATTC	3 cut(s)	328, 621, 3059
EcoRII	CCWGG	3 cut(s)	685, 725, 2212
EcoRV	GATATC	1 cut(s)	2421
EcoT22I	ATGCAT	2 cut(s)	664, 2267
EcoT38I	GRGCYC	1 cut(s)	1473
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FalI	AAGNNNNNCTT	3 cut(s)	303, 335, 3296
FaqI	GGGAC	4 cut(s)	554, 1010, 2445, 2499
FauNDI	CATATG	2 cut(s)	150, 1153
FbaI	TGATCA	4 cut(s)	534, 744, 1018, 2005
FblI	GTMKAC	2 cut(s)	955, 1746
FokI	GGATG	5 cut(s)	472, 1201, 2036, 2177, 2627
FriOI	GRGCYC	1 cut(s)	1473
FspBI	CTAG	4 cut(s)	1179, 1218, 2141, 2819
GlaI	GCGC	4 cut(s)	6, 896, 1811, 1875
GsaI	CCCAGC	1 cut(s)	1816
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	8 cut(s)	11, 203, 1290, 1353, 1925, 1976, 2543, 3253
HapII	CCGG	6 cut(s)	8, 12, 204, 652, 1392, 1599
HhaI	GCGC	4 cut(s)	7, 897, 1812, 1876
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	4 cut(s)	5, 895, 1810, 1874
HinP1I	GCGC	4 cut(s)	5, 895, 1810, 1874
HindIII	AAGCTT	1 cut(s)	2453
HinfI	GANTC	9 cut(s)	20, 154, 239, 342, 576, 887, 1856, 2217, 2779
HpaII	CCGG	6 cut(s)	8, 12, 204, 652, 1392, 1599
Hpy166II	GTNNAC	7 cut(s)	108, 229, 246, 265, 956, 1105, 1747
Hpy188III	TCNNGA	7 cut(s)	100, 706, 901, 1367, 1680, 2073, 3268
Hpy8I	GTNNAC	7 cut(s)	108, 229, 246, 265, 956, 1105, 1747
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	8 cut(s)	790, 799, 1460, 1674, 2357, 2632, 2964, 3307
HpyCH4III	ACNGT	8 cut(s)	88, 132, 269, 545, 1282, 1864, 2704, 3196
HpyCH4IV	ACGT	2 cut(s)	225, 1487
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 425, 767, 1359, 1559, 2582, 2833
HpySE526I	ACGT	2 cut(s)	225, 1487
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	4 cut(s)	5, 895, 1810, 1874
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	2 cut(s)	7, 1391
KroNI	GCCGGC	2 cut(s)	9, 1393
Ksp22I	TGATCA	4 cut(s)	534, 744, 1018, 2005
LguI	GCTCTTC	2 cut(s)	685, 1405
LmnI	GCTCC	5 cut(s)	1476, 1841, 2530, 2764, 2813
LweI	GCATC	7 cut(s)	440, 1987, 2215, 2329, 2512, 2844, 3250
MaeI	CTAG	4 cut(s)	1179, 1218, 2141, 2819
MaeII	ACGT	2 cut(s)	225, 1487
MaeIII	GTNAC	9 cut(s)	155, 545, 1174, 1438, 1483, 2269, 2276, 2500, 2938
MfeI	CAATTG	2 cut(s)	2301, 2631
MflI	RGATCY	3 cut(s)	96, 668, 2200
MhlI	GDGCHC	3 cut(s)	409, 1473, 2818
MlsI	TGGCCA	2 cut(s)	1353, 1925
MluNI	TGGCCA	2 cut(s)	1353, 1925
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	5 cut(s)	14, 163, 248, 585, 2226
MmeI	TCCRAC	7 cut(s)	39, 57, 284, 430, 696, 2153, 2686
Mox20I	TGGCCA	2 cut(s)	1353, 1925
Mph1103I	ATGCAT	2 cut(s)	664, 2267
MroNI	GCCGGC	2 cut(s)	7, 1391
MroXI	GAANNNNTTC	3 cut(s)	2124, 2142, 3106
MscI	TGGCCA	2 cut(s)	1353, 1925
MslI	CAYNNNNRTG	2 cut(s)	752, 2798
Msp20I	TGGCCA	2 cut(s)	1353, 1925
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	6 cut(s)	8, 12, 204, 652, 1392, 1599
MspR9I	CCNGG	3 cut(s)	687, 727, 2214
MunI	CAATTG	2 cut(s)	2301, 2631
MvaI	CCWGG	3 cut(s)	687, 727, 2214
MvnI	CGCG	2 cut(s)	92, 1681
MwoI	GCNNNNNNNGC	7 cut(s)	62, 425, 767, 1359, 1559, 2582, 2833
NaeI	GCCGGC	2 cut(s)	9, 1393
NarI	GGCGCC	1 cut(s)	5
NdeI	CATATG	2 cut(s)	150, 1153
NgoMIV	GCCGGC	2 cut(s)	7, 1391
NmuCI	GTSAC	6 cut(s)	155, 545, 1483, 2276, 2500, 2938
NruI	TCGCGA	1 cut(s)	1681
NsiI	ATGCAT	2 cut(s)	664, 2267
NspI	RCATGY	5 cut(s)	413, 557, 1557, 1753, 2492
NspV	TTCGAA	1 cut(s)	1613
PaeI	GCATGC	1 cut(s)	1557
PaqCI	CACCTGC	1 cut(s)	1246
PciI	ACATGT	1 cut(s)	2488
PciSI	GCTCTTC	2 cut(s)	685, 1405
PcsI	WCGNNNNNNNCGW	4 cut(s)	231, 298, 343, 3273
PdiI	GCCGGC	2 cut(s)	9, 1393
PdmI	GAANNNNTTC	3 cut(s)	2124, 2142, 3106
PfeI	GAWTC	4 cut(s)	342, 887, 1856, 2779
PfoI	TCCNGGA	1 cut(s)	685
PleI	GAGTC	5 cut(s)	14, 162, 247, 584, 2225
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	5 cut(s)	14, 162, 247, 584, 2225
PpuMI	RGGWCCY	2 cut(s)	1024, 1120
PscI	ACATGT	1 cut(s)	2488
PshBI	ATTAAT	1 cut(s)	2720
Psp5II	RGGWCCY	2 cut(s)	1024, 1120
Psp6I	CCWGG	3 cut(s)	685, 725, 2212
PspFI	CCCAGC	1 cut(s)	1812
PspGI	CCWGG	3 cut(s)	685, 725, 2212
PspPI	GGNCC	8 cut(s)	108, 142, 246, 541, 1024, 1120, 1701, 3252
PspPPI	RGGWCCY	2 cut(s)	1024, 1120
PstNI	CAGNNNCTG	2 cut(s)	391, 3220
PsuI	RGATCY	3 cut(s)	96, 668, 2200
RruI	TCGCGA	1 cut(s)	1681
RsaI	GTAC	8 cut(s)	271, 324, 1002, 1165, 1461, 1991, 2830, 3279
RsaNI	GTAC	8 cut(s)	270, 323, 1001, 1164, 1460, 1990, 2829, 3278
RseI	CAYNNNNRTG	2 cut(s)	752, 2798
SapI	GCTCTTC	2 cut(s)	685, 1405
Sau96I	GGNCC	8 cut(s)	108, 142, 246, 541, 1024, 1120, 1701, 3252
SchI	GAGTC	5 cut(s)	14, 163, 248, 585, 2226
ScrFI	CCNGG	3 cut(s)	687, 727, 2214
SduI	GDGCHC	3 cut(s)	409, 1473, 2818
SfaNI	GCATC	7 cut(s)	440, 1987, 2215, 2329, 2512, 2844, 3250
SfcI	CTRYAG	3 cut(s)	1065, 1563, 1860
SfoI	GGCGCC	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	1613
SinI	GGWCC	7 cut(s)	108, 142, 246, 541, 1024, 1120, 1701
SmiMI	CAYNNNNRTG	2 cut(s)	752, 2798
SmlI	CTYRAG	3 cut(s)	296, 1932, 2808
SmoI	CTYRAG	3 cut(s)	296, 1932, 2808
SpeI	ACTAGT	3 cut(s)	1178, 2140, 2818
SphI	GCATGC	1 cut(s)	1557
SsiI	CCGC	5 cut(s)	489, 1004, 1540, 2083, 2857
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	2674
SspMI	CTAG	4 cut(s)	1179, 1218, 2141, 2819
StyD4I	CCNGG	3 cut(s)	685, 725, 2212
TaaI	ACNGT	8 cut(s)	88, 132, 269, 545, 1282, 1864, 2704, 3196
TaiI	ACGT	2 cut(s)	228, 1490
TaqI	TCGA	5 cut(s)	1329, 1613, 2656, 2875, 3070
TaqII	GACCGA	1 cut(s)	195
TatI	WGTACW	2 cut(s)	322, 1989
TfiI	GAWTC	4 cut(s)	342, 887, 1856, 2779
TseFI	GTSAC	6 cut(s)	155, 545, 1483, 2276, 2500, 2938
Tsp45I	GTSAC	6 cut(s)	155, 545, 1483, 2276, 2500, 2938
TspGWI	ACGGA	1 cut(s)	2982
VpaK11BI	GGWCC	7 cut(s)	108, 142, 246, 541, 1024, 1120, 1701
VspI	ATTAAT	1 cut(s)	2720
XceI	RCATGY	5 cut(s)	413, 557, 1557, 1753, 2492
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2702
XmiI	GTMKAC	2 cut(s)	955, 1746
XmnI	GAANNNNTTC	3 cut(s)	2124, 2142, 3106
XspI	CTAG	4 cut(s)	1179, 1218, 2141, 2819
Zsp2I	ATGCAT	2 cut(s)	664, 2267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.