Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003103

Physical Location & Seq

Genomic Coordinates Forward (+)

14936752 .. 14961711

Gene Structure 24960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G007130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3234 bp

ATGAGTCACCCAATAAGCAGCTCGCTTGACCGACCAAACCACGATTTAGAGGCCGGAAGCAGTCGCTCAGGCAACGTGAACGACGATGAGTCGTGGACCGATCCTTTTGATATGAACAGTACCAAGTATGCTTCTGTTGAACGCCTCAAGCGTTGGAGGAAAGCAGCACTTGTACTGAATTCTTCTCGCCGATTCCGATACACCCTCAACTTGAAAAAGGAAGAAGAGAAGAAACAGACACTGAGGAAGATAAGAGCACATGCACAAGCCATACGAGCTGCATCTTTATACGCAGAAGTTGCAGGGGATTTCCAAGGAACTTTACAACCGATAGCATCCGCTGCTAGCGATTTTCAGATTGCCCATGAGCAACTTGTTTCAGTGATCAGGGACCGTGACTTACATGCTATGCAACAATATGGGGGAGTCAGTGGCTTAGCAGATTTATTGAAAACCAATCTACACAAGGGAATTCTTGGTGATAGTGCTGATTGTCTAAACCGGAAAAATGCATTTGGATCCAACACATATCCTCCTGGAAGAGCAAGGAGTTTCTGGACTATTCTTTGGGAAGCCTGGCAAGACCTTACTCTGATCATTTTGATGATAGCAGCAGTGGCTACCTTAGGGCTACATATAAATATGAAGGATATGAAGGAGGAATGGTATGGTGGTGGCAGCATTGCTTTAGCAGTTATTCTTGTCATTGTTGTCATAGCCATTAGTGATTACAATGAATCCCTGCGCTTCCAGAGTTTGATTGCAGAGAGGAGAAATATACATTTAGAGGTCATCAGAGGTGGTAGACGAGTTGAGGTTTCTATTTATGATATTGTCGTTGGTGATGTTGTACCGCTTAGCATTGGTGATCAGGTCCCTGCTGATGGTATTTTAATCACTGGCTACTCACTTGCTACAGAGGAGACCCAAATCATTGGGGATAGCAAGATTGTTCACAAGGACTGCAAGGACCCATTTCTGATGTCTGGCTGCAAAATTGCAAATGGGAGTGGTACAATGCTGGTAACTAGTGTAGGCATGAATACTGAATGGGGTTTGCTCATGGCTAGTATTTCAGAAGATATTGGTGAAGAAACACCTTTGCAGGTGGGTTTAAATGGAGTTGCTACTGTCATTGGACTTTTTGGGATCGTAATAGCTCTTTTCGTCTTCAATGTCGATTTAGTTAGATTATTTACCGGCCATTCAAGGAATCCAGATGGAACTAGTCAGTTTGTACCCGGCAAGACTGGATTTGAAAAAGCCATTCAATTTACTATCATTGTGACCAATGTAATGGTTGCTGTACCTGAAGGGCTCCCTATTGCTGTCACGTTAATCCTTGTCTATTCCATGACCAAAATGATGGCAGATAAGATCTTGGTGCGGAGGCAATCTGCATGCGAGGCTATAGGCTCTGCCACAACTATTTGCATTGATAAGACTGGACTTTTAACTTCGAACCAGATGACTGTTGTTAAGGCTTATGTTGGTGGGAAGAAAATCTATCCTTCAGACAATAAGTCGCGATTGTCTCCAATGCTATGGTCGTTAATTATTGAAAGCATTGCACAGAACACAAATGGCAGTGTCTACATGGCTGAGAATGGCGGTGATGTAGAGGTTTATGGATCACCAACTGAAAAAGCAATTCTGCGCTGGGGGATTAAGATTGGAATGAATTTTGAAGCCACGAAGTCTGAATCTACAGTTCTTCATGCGCTCGCATTTAACTCAGTGAAGAAACGAAGTGCTGTTGCACTTAAATTGGCCAATTCTCAAGTTCATATACACTGGAAAGGGGCTGCTGAAACAATCTTGGCCTCATGCACAAAGTACATTGATGCTAATGATCACTTGGTAGCAATGGATGAAGATAAGTTAATGTTTTTCAATGAAGCTATTGAGGGTATGGCTTCTGGAAGTCTGCGGTGTGTTGCTATTGCATATAGGTTATACGAGTTTGAAAATGTTCCGACTGATGAACAACTAGTTCAGTGGGCATTACCTGAGGATGACCTTATTTTACTTGCTATTGTTGGTATAGAGGATCCTTGTCAGCCAGGAGTCAGAGATGCAGTGCGACAATGCCAAAATGCTGGTGTTAAGGTATGCATGGTTACGGGTGACAATCTTCAAACAGCAAAAGCAATTGCTTTGGAGTGTGGCATACTTGGTTCCGAGGCAGATGCTACTGAACAAAATATCATTGAAGGAAGAGTATTTCGTGCCTTTTCTGATAAGCAAAGAGAAGATTTAGCTGAGAGGATATCAGTGATGGGACGATCTTCACCCAATGACAAGCTTCTTCTTGTGCAAGCACTGAAGAAAAGGGGACATGTTGTTGCTGTCACTGGTGATGGTTGTAATGATGCTCCGGCATTATATGAGGCCGATATTGGTCTTGCTATGGGTATTCAAGGGGCTGAAGTAGCTAAAGAGAGTTCAGATATAATCATCTTGGATAATAACTTTTCTACAATTGTGAAGGCTATCAAATGGGGTCGATCTGTATATTCAAATATTCAGAAATTTACCCAGTTCCATCTTACAGTTGGACTTGCAGCATTAATCATAAATGTCATGGCAGAAGTTTCCTCTGGTTCAGCTCCATTAAATGCTGTGCAGATTCTCTGGGTAAGCATTATCATGGACACTCAAGGAGCACTAGTATTGCGTACTGAGCCACCATCTGATAACCTGATGCGGAAGCCTCCTGTTGATCGAAAGGCACCTCTTATTACAAATATAGTTTGGAGGAACTTGTTGGTTCAGTCTTTCTACCAAGTCACTATCTTGCTTATTCTAAATTTCCACGGAAGGAATTTGCTGAATTTGGAACTTGCTGATTGCAATGTGATGAATACAATGATATTCAATGCTTTTGTCCTTTGTCAAATTTTCAATGAATTCAATGCTCGAAAGCCTGAGGAATATAACATTTTCAAAGGAATTACTTCAAACTATCTCTTTGTGGGAACAGTGGGAATAACTCTTGTGCTTCAGATTGTTGCCATTGAGTTTCTTGGCAAATTTACTTCAACTGTGAGGCTTAACTTGAAGCAGTGGCTGATTTCCATCATCATTGGTTTTATCTGTTGGCCCCTTGATGCTATCGGGAAACTCATACCAGTTCCAAAAACTCCCTTCATCAAGTTTGCCTTGAAGCTTTGGACACTGTGCAGCTGCCTTAGCCAAGCATGTCCCGAATGCTCGCTCAGCCTTTGCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1077

Amino Acids

118.18

Weight (kDa)

6.25

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	34 - 76	1.7e-15	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	140 - 206	4.3e-12	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	263 - 357	4.6e-16	P-type ATPase actuator domain
Cation_ATPase	PF13246	528 - 688	4.4e-28	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	665 - 798	1.9e-14	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	870 - 1043	3.8e-41	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29900 AT4G29900 AT5G57110 AT5G57110 AT5G57110
fragaria_vesca	FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940
malus_domestica	MD13G1241000.v1.1 MD16G1245600.v1.1 MD16G1246100.v1.1
prunus_persica	Prupe.1G072600_v2.0.a1 Prupe.8G012900_v2.0.a1
pyrus_communis	pycom13g21220
rosa_chinensis	RchiOBHm_Chr4g0398891 RchiOBHm_Chr4g0398951
rosa_laevigata	RLG00000009307 RLG00000009309 RLG00000009365
rosa_multiflora	Rmu_sc0004094.1_g000033 Rmu_ssc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343340 Rroxscaffold_5G00343930 Rroxscaffold_5G00344000
rosa_rugosa	Rorug04G0013200
rosa_samantha	Rh4AG091100 Rh4CG093100 Rh4CG099100 Rh4CG099400
rosa_wichuraiana	Rw4G007100 Rw4G007130 Rw4G007500 Rw4G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1096
Acc36I	ACCTGC	2 cut(s)	1096, 3219
AccB1I	GGYRCC	1 cut(s)	2731
AccI	GTMKAC	2 cut(s)	805, 1593
AccII	CGCG	1 cut(s)	1528
AciI	CCGC	6 cut(s)	339, 854, 1387, 1611, 1930, 2707
AclWI	GGATC	7 cut(s)	95, 513, 526, 1157, 1639, 2045, 2058
AcoI	YGGCCR	2 cut(s)	1201, 1770
AcuI	CTGAAG	5 cut(s)	1332, 1497, 2345, 2448, 2987
AfaI	GTAC	8 cut(s)	121, 174, 852, 1015, 1239, 1308, 1838, 2680
AfiI	CCNNNNNNNGG	1 cut(s)	884
AflIII	ACRYGT	1 cut(s)	2338
AhdI	GACNNNNNGTC	2 cut(s)	88, 1522
AhlI	ACTAGT	4 cut(s)	1028, 1226, 1990, 2668
AjnI	CCWGG	3 cut(s)	535, 575, 2062
Alw21I	GWGCWC	2 cut(s)	259, 2668
Alw26I	GTCTC	2 cut(s)	917, 1539
AlwI	GGATC	7 cut(s)	95, 513, 526, 1157, 1639, 2045, 2058
AlwNI	CAGNNNCTG	2 cut(s)	241, 3070
AoxI	GGCC	6 cut(s)	51, 1201, 1770, 1821, 2391, 3101
AseI	ATTAAT	1 cut(s)	2570
Asp700I	GAANNNNTTC	2 cut(s)	1971, 2956
AspLEI	GCGC	3 cut(s)	747, 1659, 1723
AspS9I	GGNCC	5 cut(s)	96, 391, 874, 970, 3102
AsuC2I	CCSGG	1 cut(s)	1242
AsuHPI	GGTGA	9 cut(s)	491, 854, 878, 1100, 1625, 1626, 2138, 2283, 2369
AsuII	TTCGAA	1 cut(s)	1460
AsuNHI	GCTAGC	1 cut(s)	344
AvaII	GGWCC	4 cut(s)	96, 391, 874, 970
AxyI	CCTNAGG	3 cut(s)	625, 2010, 2928
BalI	TGGCCA	1 cut(s)	1772
BamHI	GGATCC	2 cut(s)	518, 2050
BanI	GGYRCC	1 cut(s)	2731
BanII	GRGCYC	1 cut(s)	1320
BbsI	GAAGAC	1 cut(s)	1162
Bbv12I	GWGCWC	2 cut(s)	259, 2668
BccI	CCATC	8 cut(s)	878, 1214, 1360, 2272, 2354, 2553, 2698, 3086
BcgI	CGANNNNNNTGC	2 cut(s)	2171, 2205
BciT130I	CCWGG	3 cut(s)	537, 577, 2064
BclI	TGATCA	4 cut(s)	384, 594, 868, 1852
BcnI	CCSGG	1 cut(s)	1242
BcoDI	GTCTC	2 cut(s)	917, 1539
BcuI	ACTAGT	4 cut(s)	1028, 1226, 1990, 2668
BfaI	CTAG	6 cut(s)	345, 1029, 1068, 1227, 1991, 2669
BfmI	CTRYAG	3 cut(s)	915, 1410, 1707
BfuAI	ACCTGC	2 cut(s)	1096, 3219
BglII	AGATCT	1 cut(s)	1377
BlpI	GCTNAGC	3 cut(s)	436, 857, 3218
Bme1390I	CCNGG	4 cut(s)	537, 577, 1242, 2064
Bme18I	GGWCC	4 cut(s)	96, 391, 874, 970
BmeRI	GACNNNNNGTC	2 cut(s)	88, 1522
BmgT120I	GGNCC	5 cut(s)	96, 391, 874, 970, 3102
BmiI	GGNNCC	9 cut(s)	392, 520, 876, 972, 1319, 2052, 2179, 2733, 3104
BmrFI	CCNGG	4 cut(s)	537, 577, 1242, 2064
BmrI	ACTGGG	1 cut(s)	2533
BmsI	GCATC	8 cut(s)	290, 344, 1834, 2065, 2179, 2362, 2694, 3100
BmtI	GCTAGC	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	2533
BpiI	GAAGAC	1 cut(s)	1162
Bpu10I	CCTNAGC	2 cut(s)	67, 3191
Bpu1102I	GCTNAGC	3 cut(s)	436, 857, 3218
Bpu14I	TTCGAA	1 cut(s)	1460
BpuEI	CTTGAG	3 cut(s)	131, 1764, 2643
BpuMI	CCSGG	1 cut(s)	1242
BsaBI	GATNNNNATC	1 cut(s)	3077
BsaI	GGTCTC	1 cut(s)	917
BsaJI	CCNNGG	3 cut(s)	313, 2181, 2815
BsaWI	WCCGGW	1 cut(s)	501
BsaXI	ACNNNNNCTCC	6 cut(s)	517, 547, 650, 680, 2655, 2685
Bsc4I	CCNNNNNNNGG	1 cut(s)	884
Bse118I	RCCGGY	1 cut(s)	1199
Bse1I	ACTGG	7 cut(s)	904, 1255, 1450, 1799, 2359, 2539, 3131
Bse21I	CCTNAGG	3 cut(s)	625, 2010, 2928
Bse3DI	GCAATG	4 cut(s)	681, 1566, 1872, 2860
Bse8I	GATNNNNATC	1 cut(s)	3077
BseBI	CCWGG	3 cut(s)	537, 577, 2064
BseDI	CCNNGG	3 cut(s)	313, 2181, 2815
BseGI	GGATG	3 cut(s)	335, 1876, 2020
BseJI	GATNNNNATC	1 cut(s)	3077
BseLI	CCNNNNNNNGG	1 cut(s)	884
BseMI	GCAATG	4 cut(s)	681, 1566, 1872, 2860
BseMII	CTCAG	9 cut(s)	81, 233, 1593, 1749, 2001, 2253, 2673, 2919, 3232
BseNI	ACTGG	7 cut(s)	904, 1255, 1450, 1799, 2359, 2539, 3131
BseRI	GAGGAG	2 cut(s)	784, 935
BseYI	CCCAGC	1 cut(s)	1659
BsgI	GTGCAG	2 cut(s)	2645, 3202
Bsh1236I	CGCG	1 cut(s)	1528
BshFI	GGCC	6 cut(s)	53, 1203, 1772, 1823, 2393, 3103
BshNI	GGYRCC	1 cut(s)	2731
BsiHKAI	GWGCWC	2 cut(s)	259, 2668
BsiSI	CCGG	5 cut(s)	54, 502, 1200, 1242, 2378
BslFI	GGGAC	5 cut(s)	404, 860, 2295, 2349, 3189
BslI	CCNNNNNNNGG	1 cut(s)	884
BsmAI	GTCTC	2 cut(s)	917, 1539
BsmFI	GGGAC	5 cut(s)	404, 860, 2295, 2349, 3189
BsmI	GAATGC	1 cut(s)	3215
BsnI	GGCC	6 cut(s)	53, 1203, 1772, 1823, 2393, 3103
Bso31I	GGTCTC	1 cut(s)	917
Bsp119I	TTCGAA	1 cut(s)	1460
Bsp1286I	GDGCHC	3 cut(s)	259, 1320, 2668
Bsp1720I	GCTNAGC	3 cut(s)	436, 857, 3218
Bsp68I	TCGCGA	1 cut(s)	1528
BspACI	CCGC	6 cut(s)	339, 854, 1387, 1611, 1930, 2707
BspANI	GGCC	6 cut(s)	53, 1203, 1772, 1823, 2393, 3103
BspCNI	CTCAG	9 cut(s)	80, 234, 1594, 1748, 2002, 2254, 2674, 2920, 3231
BspFNI	CGCG	1 cut(s)	1528
BspLI	GGNNCC	9 cut(s)	392, 520, 876, 972, 1319, 2052, 2179, 2733, 3104
BspMI	ACCTGC	2 cut(s)	1096, 3219
BspOI	GCTAGC	1 cut(s)	348
BspPI	GGATC	7 cut(s)	95, 513, 526, 1157, 1639, 2045, 2058
BspQI	GCTCTTC	1 cut(s)	535
BspT104I	TTCGAA	1 cut(s)	1460
BspT107I	GGYRCC	1 cut(s)	2731
BspTNI	GGTCTC	1 cut(s)	917
BsrDI	GCAATG	4 cut(s)	681, 1566, 1872, 2860
BsrFI	RCCGGY	1 cut(s)	1199
BsrI	ACTGG	7 cut(s)	904, 1255, 1450, 1799, 2359, 2539, 3131
BssAI	RCCGGY	1 cut(s)	1199
BssECI	CCNNGG	3 cut(s)	313, 2181, 2815
BssT1I	CCWWGG	1 cut(s)	313
Bst2UI	CCWGG	3 cut(s)	537, 577, 2064
Bst4CI	ACNGT	9 cut(s)	119, 395, 1132, 1474, 1711, 2554, 2983, 3046, 3180
Bst6I	CTCTTC	3 cut(s)	219, 535, 2212
BstAPI	GCANNNNNTGC	2 cut(s)	299, 341
BstBI	TTCGAA	1 cut(s)	1460
BstC8I	GCNNGC	6 cut(s)	23, 346, 1402, 1725, 2319, 3215
BstDSI	CCRYGG	1 cut(s)	2815
BstF5I	GGATG	3 cut(s)	335, 1876, 2020
BstFNI	CGCG	1 cut(s)	1528
BstHHI	GCGC	3 cut(s)	747, 1659, 1723
BstMAI	GTCTC	2 cut(s)	917, 1539
BstMWI	GCNNNNNNNGC	9 cut(s)	275, 299, 341, 617, 1406, 2432, 2683, 3192, 3219
BstNI	CCWGG	3 cut(s)	537, 577, 2064
BstNSI	RCATGY	5 cut(s)	263, 407, 1404, 2342, 3204
BstSCI	CCNGG	4 cut(s)	535, 575, 1240, 2062
BstSFI	CTRYAG	3 cut(s)	915, 1410, 1707
BstUI	CGCG	1 cut(s)	1528
BstV2I	GAAGAC	1 cut(s)	1162
BstX2I	RGATCY	3 cut(s)	518, 1377, 2050
BstXI	CCANNNNNNTGG	5 cut(s)	935, 1297, 1366, 1545, 2099
BstYI	RGATCY	3 cut(s)	518, 1377, 2050
Bsu36I	CCTNAGG	3 cut(s)	625, 2010, 2928
BsuRI	GGCC	6 cut(s)	53, 1203, 1772, 1823, 2393, 3103
BtgI	CCRYGG	1 cut(s)	2815
BtsCI	GGATG	3 cut(s)	335, 1876, 2020
BtsI	GCAGTG	4 cut(s)	621, 1594, 2085, 3071
BtuMI	TCGCGA	1 cut(s)	1528
BveI	ACCTGC	2 cut(s)	1096, 3219
Cac8I	GCNNGC	6 cut(s)	23, 346, 1402, 1725, 2319, 3215
CaiI	CAGNNNCTG	2 cut(s)	241, 3070
CfoI	GCGC	3 cut(s)	747, 1659, 1723
Cfr10I	RCCGGY	1 cut(s)	1199
Cfr13I	GGNCC	5 cut(s)	96, 391, 874, 970, 3102
Csp6I	GTAC	8 cut(s)	120, 173, 851, 1014, 1238, 1307, 1837, 2679
CviQI	GTAC	8 cut(s)	120, 173, 851, 1014, 1238, 1307, 1837, 2679
DraI	TTTAAA	1 cut(s)	1116
DriI	GACNNNNNGTC	2 cut(s)	88, 1522
EaeI	YGGCCR	2 cut(s)	1201, 1770
Eam1104I	CTCTTC	3 cut(s)	219, 535, 2212
Eam1105I	GACNNNNNGTC	2 cut(s)	88, 1522
EarI	CTCTTC	3 cut(s)	219, 535, 2212
Eco130I	CCWWGG	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	1320
Eco31I	GGTCTC	1 cut(s)	917
Eco32I	GATATC	1 cut(s)	2271
Eco47I	GGWCC	4 cut(s)	96, 391, 874, 970
Eco57I	CTGAAG	5 cut(s)	1332, 1497, 2345, 2448, 2987
Eco81I	CCTNAGG	3 cut(s)	625, 2010, 2928
EcoO109I	RGGNCCY	2 cut(s)	874, 970
EcoRI	GAATTC	3 cut(s)	178, 471, 2909
EcoRII	CCWGG	3 cut(s)	535, 575, 2062
EcoRV	GATATC	1 cut(s)	2271
EcoT14I	CCWWGG	1 cut(s)	313
EcoT22I	ATGCAT	2 cut(s)	514, 2117
EcoT38I	GRGCYC	1 cut(s)	1320
ErhI	CCWWGG	1 cut(s)	313
FalI	AAGNNNNNCTT	4 cut(s)	153, 185, 3146, 3178
FaqI	GGGAC	5 cut(s)	404, 860, 2295, 2349, 3189
FbaI	TGATCA	4 cut(s)	384, 594, 868, 1852
FblI	GTMKAC	2 cut(s)	805, 1593
FokI	GGATG	3 cut(s)	322, 1883, 2027
FriOI	GRGCYC	1 cut(s)	1320
FspBI	CTAG	6 cut(s)	345, 1029, 1068, 1227, 1991, 2669
GlaI	GCGC	3 cut(s)	746, 1658, 1722
GsaI	CCCAGC	1 cut(s)	1663
HaeIII	GGCC	6 cut(s)	53, 1203, 1772, 1823, 2393, 3103
HapII	CCGG	5 cut(s)	54, 502, 1200, 1242, 2378
HhaI	GCGC	3 cut(s)	747, 1659, 1723
Hin6I	GCGC	3 cut(s)	745, 1657, 1721
HinP1I	GCGC	3 cut(s)	745, 1657, 1721
HindIII	AAGCTT	2 cut(s)	2303, 3167
HinfI	GANTC	9 cut(s)	4, 89, 192, 426, 737, 1213, 1703, 2067, 2629
HpaII	CCGG	5 cut(s)	54, 502, 1200, 1242, 2378
HphI	GGTGA	9 cut(s)	491, 854, 878, 1100, 1625, 1626, 2138, 2283, 2369
Hpy166II	GTNNAC	5 cut(s)	79, 96, 806, 955, 1594
Hpy188III	TCNNGA	7 cut(s)	556, 751, 1217, 1527, 1920, 3118, 3206
Hpy8I	GTNNAC	5 cut(s)	79, 96, 806, 955, 1594
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	8 cut(s)	640, 649, 1307, 1521, 2207, 2482, 2814, 3157
HpyCH4III	ACNGT	9 cut(s)	119, 395, 1132, 1474, 1711, 2554, 2983, 3046, 3180
HpyCH4IV	ACGT	2 cut(s)	75, 1334
HpyF10VI	GCNNNNNNNGC	9 cut(s)	275, 299, 341, 617, 1406, 2432, 2683, 3192, 3219
HpySE526I	ACGT	2 cut(s)	75, 1334
HspAI	GCGC	3 cut(s)	745, 1657, 1721
Ksp22I	TGATCA	4 cut(s)	384, 594, 868, 1852
LguI	GCTCTTC	1 cut(s)	535
LmnI	GCTCC	4 cut(s)	1323, 2380, 2614, 2663
LweI	GCATC	8 cut(s)	290, 344, 1834, 2065, 2179, 2362, 2694, 3100
MaeI	CTAG	6 cut(s)	345, 1029, 1068, 1227, 1991, 2669
MaeII	ACGT	2 cut(s)	75, 1334
MaeIII	GTNAC	9 cut(s)	5, 395, 1024, 1285, 1330, 2119, 2126, 2350, 2788
MfeI	CAATTG	2 cut(s)	2151, 2481
MflI	RGATCY	3 cut(s)	518, 1377, 2050
MhlI	GDGCHC	3 cut(s)	259, 1320, 2668
MlsI	TGGCCA	1 cut(s)	1772
MluNI	TGGCCA	1 cut(s)	1772
MlyI	GAGTC	4 cut(s)	13, 98, 435, 2076
MmeI	TCCRAC	4 cut(s)	134, 546, 2000, 2536
Mox20I	TGGCCA	1 cut(s)	1772
Mph1103I	ATGCAT	2 cut(s)	514, 2117
MroXI	GAANNNNTTC	2 cut(s)	1971, 2956
MscI	TGGCCA	1 cut(s)	1772
MslI	CAYNNNNRTG	2 cut(s)	602, 2648
Msp20I	TGGCCA	1 cut(s)	1772
MspA1I	CMGCKG	2 cut(s)	341, 3186
MspI	CCGG	5 cut(s)	54, 502, 1200, 1242, 2378
MspR9I	CCNGG	4 cut(s)	537, 577, 1242, 2064
MunI	CAATTG	2 cut(s)	2151, 2481
Mva1269I	GAATGC	1 cut(s)	3215
MvaI	CCWGG	3 cut(s)	537, 577, 2064
MvnI	CGCG	1 cut(s)	1528
MwoI	GCNNNNNNNGC	9 cut(s)	275, 299, 341, 617, 1406, 2432, 2683, 3192, 3219
NciI	CCSGG	1 cut(s)	1242
NheI	GCTAGC	1 cut(s)	344
NlaIV	GGNNCC	9 cut(s)	392, 520, 876, 972, 1319, 2052, 2179, 2733, 3104
NmuCI	GTSAC	7 cut(s)	5, 395, 1285, 1330, 2126, 2350, 2788
NruI	TCGCGA	1 cut(s)	1528
NsiI	ATGCAT	2 cut(s)	514, 2117
NspI	RCATGY	5 cut(s)	263, 407, 1404, 2342, 3204
NspV	TTCGAA	1 cut(s)	1460
PaeI	GCATGC	1 cut(s)	1404
PaqCI	CACCTGC	1 cut(s)	1096
PciI	ACATGT	1 cut(s)	2338
PciSI	GCTCTTC	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 148, 193
PctI	GAATGC	1 cut(s)	3215
PdmI	GAANNNNTTC	2 cut(s)	1971, 2956
PfeI	GAWTC	5 cut(s)	192, 737, 1213, 1703, 2629
PfoI	TCCNGGA	1 cut(s)	535
PleI	GAGTC	4 cut(s)	12, 97, 434, 2075
PpsI	GAGTC	4 cut(s)	12, 97, 434, 2075
PpuMI	RGGWCCY	2 cut(s)	874, 970
PscI	ACATGT	1 cut(s)	2338
PshBI	ATTAAT	1 cut(s)	2570
Psp5II	RGGWCCY	2 cut(s)	874, 970
Psp6I	CCWGG	3 cut(s)	535, 575, 2062
PspFI	CCCAGC	1 cut(s)	1659
PspGI	CCWGG	3 cut(s)	535, 575, 2062
PspN4I	GGNNCC	9 cut(s)	392, 520, 876, 972, 1319, 2052, 2179, 2733, 3104
PspPI	GGNCC	5 cut(s)	96, 391, 874, 970, 3102
PspPPI	RGGWCCY	2 cut(s)	874, 970
PstNI	CAGNNNCTG	2 cut(s)	241, 3070
PsuI	RGATCY	3 cut(s)	518, 1377, 2050
PvuII	CAGCTG	1 cut(s)	3186
RruI	TCGCGA	1 cut(s)	1528
RsaI	GTAC	8 cut(s)	121, 174, 852, 1015, 1239, 1308, 1838, 2680
RsaNI	GTAC	8 cut(s)	120, 173, 851, 1014, 1238, 1307, 1837, 2679
RseI	CAYNNNNRTG	2 cut(s)	602, 2648
SapI	GCTCTTC	1 cut(s)	535
Sau96I	GGNCC	5 cut(s)	96, 391, 874, 970, 3102
SchI	GAGTC	4 cut(s)	13, 98, 435, 2076
ScrFI	CCNGG	4 cut(s)	537, 577, 1242, 2064
SduI	GDGCHC	3 cut(s)	259, 1320, 2668
SfaNI	GCATC	8 cut(s)	290, 344, 1834, 2065, 2179, 2362, 2694, 3100
SfcI	CTRYAG	3 cut(s)	915, 1410, 1707
SfuI	TTCGAA	1 cut(s)	1460
SinI	GGWCC	4 cut(s)	96, 391, 874, 970
SmiMI	CAYNNNNRTG	2 cut(s)	602, 2648
SmlI	CTYRAG	3 cut(s)	146, 1779, 2658
SmoI	CTYRAG	3 cut(s)	146, 1779, 2658
SpeI	ACTAGT	4 cut(s)	1028, 1226, 1990, 2668
SphI	GCATGC	1 cut(s)	1404
SsiI	CCGC	6 cut(s)	339, 854, 1387, 1611, 1930, 2707
SspI	AATATT	1 cut(s)	2524
SspMI	CTAG	6 cut(s)	345, 1029, 1068, 1227, 1991, 2669
StyD4I	CCNGG	4 cut(s)	535, 575, 1240, 2062
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	9 cut(s)	119, 395, 1132, 1474, 1711, 2554, 2983, 3046, 3180
TaiI	ACGT	2 cut(s)	78, 1337
TaqI	TCGA	5 cut(s)	1179, 1460, 2506, 2725, 2920
TaqII	GACCGA	2 cut(s)	45, 113
TatI	WGTACW	2 cut(s)	172, 1836
TfiI	GAWTC	5 cut(s)	192, 737, 1213, 1703, 2629
TseFI	GTSAC	7 cut(s)	5, 395, 1285, 1330, 2126, 2350, 2788
Tsp45I	GTSAC	7 cut(s)	5, 395, 1285, 1330, 2126, 2350, 2788
TspGWI	ACGGA	1 cut(s)	2832
VpaK11BI	GGWCC	4 cut(s)	96, 391, 874, 970
VspI	ATTAAT	1 cut(s)	2570
XceI	RCATGY	5 cut(s)	263, 407, 1404, 2342, 3204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2552
XmiI	GTMKAC	2 cut(s)	805, 1593
XmnI	GAANNNNTTC	2 cut(s)	1971, 2956
XspI	CTAG	6 cut(s)	345, 1029, 1068, 1227, 1991, 2669
Zsp2I	ATGCAT	2 cut(s)	514, 2117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.