Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003103

Physical Location & Seq

Genomic Coordinates Forward (+)

50641816 .. 50655697

Gene Structure 13882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009307

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3243 bp

ATGAGTCATTCAACGGGCTCGCTGAACGATGTGGAAGCCGGAAACAACCGTTCCGGCGACGACGAGGAGTCGTCGAATGTTTTTGATATTACCAGAACTAAGCATGCTTCCGTCGAGCGTCTCCGCCGTTGGAGGCAAGCGGCACTTGTGCTAAATGCTTCTCGTCGATTCCGGTATACCTTAGACTTGAAAAAGGCGGAAGAAAAAAAGCAGACGTTAAGGAAGATTAGAGCACATGCACAAGCGATACGAGCTGCATTTCTTTTCAAGGAATCCGTAACACAGGAAAATGGATTTGTGCCACCAAAACCAAGTTCTGCTGGTGAATTTCCAATTGGACAAGAAGAACTAGCTTCAATTTCAAGGGATCATAATTTTACTACTCTGCAGCAATATGGGGGGGTCAAAGGCCTCGGAGAATTATTGAAAACAAGTTTAGAAAAGGGAATTCCTGGAAGTGATGATGATTTACTAAAACGAAAAACTGCATATGGACCCAACACATATCCCCGGAAAAAACCAAGGAGTTTCTGGAGATTTCTCTGGGAAGCTTGCCAAGATCTTACTCTTATCATTTTGATGGTAGCTGCTGTGGCTTCTTTAGCGCTGGGTATAAAAACAGAGGGTATAAAGGAGGGATGGTATGATGGGGGCAGCATTGCTTTTGCAGTTCTCCTGGTCATTGTCGTGACAGCCATTAGTGACTACAAACAATCTCTGCAGTTCCAGAATCTAAATGAGGAAAAGAGAAATATACAAATTGAGGTTATCAGAGGTGGTAGACGTGTTGAGGTTTCAATTTATGATCTTGTTGTAGGTGATGTTATACCCCTTAACATTGGTGATCAGGTTCCTGCTGATGGGCTTTTAATCATTGGTCATTCACTTTCAATTGATGAGTCTAGCATGACTGGCGAGTCCAAGATTGTTCGCAAGGACTCCAAAGAACCATTTCTAATGTCCGGCTGCAAAGTAGCAGATGGAAATGGTATAATGCTGGTAACCAGTGTTGGGATTAATACTGAATGGGGATTACTCATGGCTAGCATCTCGGAAGACACTGGTGAAGAAACACCCTTGCAGGTGCGCTTGAATGGGGTTGCTACCTTCATTGGTGTTGTGGGACTCACAGTAGCTCTCCTCGTCTTATGTGTCCTTTTGGTCAGATACTTTACTGGCCATACAACAAATGCAGATGGAACTCGTCAATTTGTTGCCGGAAAGACAAAATTTGGGAAAGCCATAGATGGAGCCATCAAAATTGTCACTATTGCAGTCACCATTGTAGTGGTTGCTGTTCCTGAAGGCCTCCCCTTAGCTGTTACCTTAACACTTGCGTACTCAATGAGAAAAATGATGGCAGATAAGGCCTTGGTACGTAGGCTTTCTGCATGTGAAACAATGGGCTCGGCCACTACTATATGCAGTGATAAGACTGGTACCTTAACTTTGAACCAGATGACTGTGGTCGAGTCTCGTGCATGTTTGAAGAAAGTCAATGACTCTGATGGCAAGCCAGACTTGTCGCCAACGATATCGTCTTTGATTATTGAAGGCATAGCTCAGAATACAACTGGCAATGTTTATGTGCCTGAGACTGGTGGTGATGTAGAGGTTACTGGATCACCAACGGAGAAGGCAATTCTGCAGTGGGCACTCAAGCTTGGGATGAATTTTGAAGCTGCCAGGTCTCAATCTTCAATTCTTCATGTGTTCCCATTCAACTCCGAGAAAAAACGAGGCAGTGTAGCAGTTAAATTGCCAAACAATGAAGTTCATATACACTGGAAAGGGGCTGCTGAAATAATCTTGGCCTCATGCACAAGATACATTGACGACAATGATCAGGTGGCAGAAATGGACGACGACAAGCTTATGTTTTTCAGGAAATCAATTGAGGATATGGCTGTTGGTAGTTTGCGTTGTGTTGCTTTAGCATATTTACCATATGAATTGGAAAATGTTCCAACTGGTGAACAACAATTAGCTGATTGGGCCATGCCTGCAGATGACCTTGTTTTACTTGCTATTGTTGGTATAAAGGATCCTTGTCGACCAGGTGTCGGAGATGCATTGAGACTATGCCAAAAGGCTGGTGTTAAGGTACGCATGGTTACTGGAGACAATGTTCAGACTGCAAAGGCAATAGCATTGGAATGTGGCATACTGTGTTCTGATTCAGATCTTAGTGAGCCAACTCTAATTGAAGGGAAAGTCTTCCGTGAGCTTTCTGATAGTCAGAGAGAAGAGGTTGCTGAGAAAATCTCGGTAATGGGACGATCCTCTCCTAATGATAAGCTTCTGCTTGTGCAAGCCCTAAGGAGAAGGGGACATGTTGTTGCTGTTACTGGAGATGGCACTAATGATGCTCCTGCACTACATGAGGCCGACATTGGTCTTGCTATGGGTATTCAAGGTACTGAGGTTGCCAAAGAGAGTTCTGATATCATTATCTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGACGTTCTGTATATGCAAATATTCAGAAATTCATCCAATTCCAACTCACTGTCAATGTTGCCGCACTTGTTATTAATGTTGTGGCAGCGATTTCCTCTGGTGAAGTACCACTAAATGCTGTTCAGCTTCTGTGGGTGAATCTTATAATGGATACTCTTGGAGCACTAGCATTGGCTACTGAGCCTCCTACGAATCATCTGATGGACAGACCTCCTGTTGGTCGAAGGGAACCGCTGATAACTAATATAATGTGGAGGAACTTATTGATTCAGGCTATCTACCAAATTACTGTCCTCCTTATCCTTAATTTCCGAGGGAAAAGTATTCTCAATCTGGAACCTGATTCTACTGACCATGCAGACAAAGTGAAGAACACACTGATATTCAATACATTTGTCCTTTGTCAAATTTTCAATGAATTCAATGCCAGGAAGCCAGATGAATTCAACATATTCAAAGGAATTACCAAAAATTATCTCTTTATGGGAATAATCGCAGTGACTCTTGTACTTCAGATTCTCATTGTCGAGTTTCTGGGGAAGTTTACTACAACTGTCCGGCTTAACTGGAAGCATTGGTTGATTTCTGTTGTCATCGCATTTATCAGTTGGCCTCTTGCTGTTGTTGGGAAGTTTATTCCAGTACCTGAAACTCCTTTCCACAAGTATTTCACTAGGAGTCCTCCCTTTAAGTTTATCACCCGAATATTCCGTCGGCGAAGAGAGAGAGCAGAGGTTTGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1081

Amino Acids

118.77

Weight (kDa)

7.52

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	26 - 68	4.9e-17	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	132 - 200	1.4e-14	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	254 - 349	1.9e-19	P-type ATPase actuator domain
Hydrolase	PF00702	473 - 797	4.9e-14	haloacid dehalogenase-like hydrolase
Cation_ATPase	PF13246	514 - 686	2.9e-31	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	868 - 1044	4.6e-45	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29900 AT4G29900 AT5G57110 AT5G57110 AT5G57110
fragaria_vesca	FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940
malus_domestica	MD13G1241000.v1.1 MD16G1245600.v1.1 MD16G1246100.v1.1
prunus_persica	Prupe.1G072600_v2.0.a1 Prupe.8G012900_v2.0.a1
pyrus_communis	pycom13g21220
rosa_chinensis	RchiOBHm_Chr4g0398891 RchiOBHm_Chr4g0398951
rosa_laevigata	RLG00000009307 RLG00000009309 RLG00000009365
rosa_multiflora	Rmu_sc0004094.1_g000033 Rmu_ssc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343340 Rroxscaffold_5G00343930 Rroxscaffold_5G00344000
rosa_rugosa	Rorug04G0013200
rosa_samantha	Rh4AG091100 Rh4CG093100 Rh4CG099100 Rh4CG099400
rosa_wichuraiana	Rw4G007100 Rw4G007130 Rw4G007500 Rw4G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2642
AarI	CACCTGC	1 cut(s)	1072
AasI	GACNNNNNNGTC	1 cut(s)	916
Acc36I	ACCTGC	1 cut(s)	1072
Acc65I	GGTACC	1 cut(s)	1439
AccB1I	GGYRCC	1 cut(s)	1439
AccI	GTMKAC	3 cut(s)	176, 781, 2053
AciI	CCGC	5 cut(s)	124, 140, 197, 2559, 2729
AclWI	GGATC	5 cut(s)	375, 1630, 2039, 2052, 2274
AcoI	YGGCCR	2 cut(s)	1177, 1410
AcsI	RAATTY	8 cut(s)	326, 447, 1229, 1672, 2525, 2904, 2915, 2939
AcuI	CTGAAG	3 cut(s)	1323, 2457, 2993
AfaI	GTAC	8 cut(s)	1340, 1377, 1441, 2106, 2419, 2604, 3006, 3141
AfeI	AGCGCT	1 cut(s)	606
AfiI	CCNNNNNNNGG	5 cut(s)	860, 1011, 1598, 2063, 2714
AflIII	ACRYGT	2 cut(s)	784, 2332
AhdI	GACNNNNNGTC	2 cut(s)	67, 2060
AjiI	CACGTC	1 cut(s)	785
AjnI	CCWGG	5 cut(s)	451, 675, 1685, 2056, 2924
AjuI	GAANNNNNNNTTGG	4 cut(s)	298, 318, 330, 350
AloI	GAACNNNNNNTCC	2 cut(s)	2112, 2144
Alw21I	GWGCWC	2 cut(s)	235, 2662
Alw26I	GTCTC	6 cut(s)	125, 1479, 1589, 1695, 2071, 2115
AlwI	GGATC	5 cut(s)	375, 1630, 2039, 2052, 2274
AlwNI	CAGNNNCTG	2 cut(s)	2626, 3143
Aor51HI	AGCGCT	1 cut(s)	606
AoxI	GGCC	9 cut(s)	409, 1177, 1306, 1368, 1410, 1812, 1995, 2385, 3107
ApeKI	GCWGC	8 cut(s)	254, 388, 587, 654, 966, 1682, 1796, 2582
ApoI	RAATTY	8 cut(s)	326, 447, 1229, 1672, 2525, 2904, 2915, 2939
ArsI	GACNNNNNNTTYG	2 cut(s)	3193, 3225
AseI	ATTAAT	2 cut(s)	1017, 2571
Asp700I	GAANNNNTTC	3 cut(s)	951, 1962, 2216
Asp718I	GGTACC	1 cut(s)	1439
AspLEI	GCGC	2 cut(s)	607, 1089
AspS9I	GGNCC	2 cut(s)	494, 1995
AsuC2I	CCSGG	1 cut(s)	511
AsuNHI	GCTAGC	1 cut(s)	1043
AvaII	GGWCC	1 cut(s)	494
AxyI	CCTNAGG	1 cut(s)	2318
BaeGI	GKGCMC	1 cut(s)	1657
BaeI	ACNNNNGTAYC	2 cut(s)	2409, 2442
BalI	TGGCCA	1 cut(s)	1179
BamHI	GGATCC	1 cut(s)	2044
BanI	GGYRCC	1 cut(s)	1439
BanII	GRGCYC	2 cut(s)	20, 1409
BarI	GAAGNNNNNNTAC	2 cut(s)	1764, 1796
BauI	CACGAG	1 cut(s)	1476
BbsI	GAAGAC	2 cut(s)	1062, 2209
Bbv12I	GWGCWC	2 cut(s)	235, 2662
BbvI	GCAGC	8 cut(s)	241, 400, 574, 666, 953, 1669, 1783, 2594
BceAI	ACGGC	1 cut(s)	111
BcgI	CGANNNNNNTGC	2 cut(s)	1460, 1494
BciT130I	CCWGG	5 cut(s)	453, 677, 1687, 2058, 2926
BciVI	GTATCC	1 cut(s)	2641
BclI	TGATCA	2 cut(s)	844, 1843
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	6 cut(s)	125, 1479, 1589, 1695, 2071, 2115
BfaI	CTAG	5 cut(s)	350, 903, 1044, 2663, 3171
BfmI	CTRYAG	4 cut(s)	386, 719, 1646, 2004
BfoI	RGCGCY	1 cut(s)	608
BfuAI	ACCTGC	1 cut(s)	1072
BfuI	GTATCC	1 cut(s)	2641
BglII	AGATCT	2 cut(s)	559, 2182
Bme1390I	CCNGG	6 cut(s)	453, 511, 677, 1687, 2058, 2926
Bme18I	GGWCC	1 cut(s)	494
BmeRI	GACNNNNNGTC	2 cut(s)	67, 2060
BmgBI	CACGTC	1 cut(s)	785
BmgT120I	GGNCC	2 cut(s)	494, 1995
BmiI	GGNNCC	7 cut(s)	496, 852, 1252, 1441, 2046, 2727, 2835
BmrFI	CCNGG	6 cut(s)	453, 511, 677, 1687, 2058, 2926
BmsI	GCATC	3 cut(s)	1056, 2059, 2356
BmtI	GCTAGC	1 cut(s)	1047
BoxI	GACNNNNGTC	2 cut(s)	1466, 2394
BpiI	GAAGAC	2 cut(s)	1062, 2209
BplI	GAGNNNNNCTC	2 cut(s)	2249, 2281
BpmI	CTGGAG	3 cut(s)	553, 2139, 2370
Bpu10I	CCTNAGC	1 cut(s)	1315
BpuEI	CTTGAG	1 cut(s)	1643
BpuMI	CCSGG	1 cut(s)	511
BsaAI	YACGTR	1 cut(s)	1379
BsaBI	GATNNNNATC	1 cut(s)	2181
BsaI	GGTCTC	1 cut(s)	1695
BsaJI	CCNNGG	5 cut(s)	412, 509, 521, 1371, 2809
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	6 cut(s)	626, 656, 2112, 2142, 2665, 2695
Bsc4I	CCNNNNNNNGG	5 cut(s)	860, 1011, 1598, 2063, 2714
Bse21I	CCTNAGG	1 cut(s)	2318
Bse3DI	GCAATG	2 cut(s)	657, 1585
Bse8I	GATNNNNATC	1 cut(s)	2181
BseBI	CCWGG	5 cut(s)	453, 677, 1687, 2058, 2926
BseDI	CCNNGG	5 cut(s)	412, 509, 521, 1371, 2809
BseGI	GGATG	4 cut(s)	644, 1674, 2464, 2529
BseJI	GATNNNNATC	1 cut(s)	2181
BseLI	CCNNNNNNNGG	5 cut(s)	860, 1011, 1598, 2063, 2714
BseMI	GCAATG	2 cut(s)	657, 1585
BseMII	CTCAG	5 cut(s)	1577, 1584, 2247, 2412, 2667
BseRI	GAGGAG	2 cut(s)	80, 1130
BseSI	GKGCMC	1 cut(s)	1657
BseXI	GCAGC	8 cut(s)	241, 400, 574, 666, 953, 1669, 1783, 2594
BseYI	CCCAGC	1 cut(s)	607
BsgI	GTGCAG	1 cut(s)	2358
BshFI	GGCC	9 cut(s)	411, 1179, 1308, 1370, 1412, 1814, 1997, 2387, 3109
BshNI	GGYRCC	1 cut(s)	1439
BsiHKAI	GWGCWC	2 cut(s)	235, 2662
BsiSI	CCGG	7 cut(s)	39, 54, 172, 511, 963, 1218, 3055
BslFI	GGGAC	4 cut(s)	1137, 2289, 2343, 2511
BslI	CCNNNNNNNGG	5 cut(s)	860, 1011, 1598, 2063, 2714
BsmAI	GTCTC	6 cut(s)	125, 1479, 1589, 1695, 2071, 2115
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	4 cut(s)	1137, 2289, 2343, 2511
BsnI	GGCC	9 cut(s)	411, 1179, 1308, 1370, 1412, 1814, 1997, 2387, 3109
Bso31I	GGTCTC	1 cut(s)	1695
Bsp1286I	GDGCHC	5 cut(s)	20, 235, 1409, 1657, 2662
Bsp143I	GATC	9 cut(s)	367, 559, 805, 844, 1622, 1843, 2044, 2182, 2279
BspACI	CCGC	5 cut(s)	124, 140, 197, 2559, 2729
BspANI	GGCC	9 cut(s)	411, 1179, 1308, 1370, 1412, 1814, 1997, 2387, 3109
BspCNI	CTCAG	5 cut(s)	1576, 1585, 2248, 2413, 2668
BspLI	GGNNCC	7 cut(s)	496, 852, 1252, 1441, 2046, 2727, 2835
BspMAI	CTGCAG	4 cut(s)	390, 723, 1650, 2008
BspMI	ACCTGC	1 cut(s)	1072
BspOI	GCTAGC	1 cut(s)	1047
BspPI	GGATC	5 cut(s)	375, 1630, 2039, 2052, 2274
BspT107I	GGYRCC	1 cut(s)	1439
BspTNI	GGTCTC	1 cut(s)	1695
BsrDI	GCAATG	2 cut(s)	657, 1585
BssECI	CCNNGG	5 cut(s)	412, 509, 521, 1371, 2809
BssMI	GATC	9 cut(s)	367, 559, 805, 844, 1622, 1843, 2044, 2182, 2279
BssNAI	GTATAC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	1476
BssT1I	CCWWGG	2 cut(s)	521, 1371
Bst1107I	GTATAC	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	1476
Bst2UI	CCWGG	5 cut(s)	453, 677, 1687, 2058, 2926
Bst4CI	ACNGT	7 cut(s)	50, 1132, 1465, 2169, 2548, 2788, 3052
Bst6I	CTCTTC	2 cut(s)	2241, 3211
BstBAI	YACGTR	1 cut(s)	1379
BstC8I	GCNNGC	8 cut(s)	20, 105, 138, 553, 1045, 1514, 2004, 2313
BstEII	GGTNACC	1 cut(s)	1000
BstF5I	GGATG	4 cut(s)	644, 1674, 2464, 2529
BstH2I	RGCGCY	1 cut(s)	608
BstHHI	GCGC	2 cut(s)	607, 1089
BstKTI	GATC	9 cut(s)	370, 562, 808, 847, 1625, 1846, 2047, 2185, 2282
BstMAI	GTCTC	6 cut(s)	125, 1479, 1589, 1695, 2071, 2115
BstMBI	GATC	9 cut(s)	367, 559, 805, 844, 1622, 1843, 2044, 2182, 2279
BstMWI	GCNNNNNNNGC	7 cut(s)	251, 593, 602, 912, 1367, 1994, 2003
BstNI	CCWGG	5 cut(s)	453, 677, 1687, 2058, 2926
BstNSI	RCATGY	5 cut(s)	107, 239, 1395, 1485, 2336
BstPAI	GACNNNNGTC	2 cut(s)	1466, 2394
BstPI	GGTNACC	1 cut(s)	1000
BstSCI	CCNGG	6 cut(s)	451, 509, 675, 1685, 2056, 2924
BstSFI	CTRYAG	4 cut(s)	386, 719, 1646, 2004
BstSLI	GKGCMC	1 cut(s)	1657
BstSNI	TACGTA	1 cut(s)	1379
BstV1I	GCAGC	8 cut(s)	241, 400, 574, 666, 953, 1669, 1783, 2594
BstV2I	GAAGAC	2 cut(s)	1062, 2209
BstX2I	RGATCY	3 cut(s)	559, 2044, 2182
BstXI	CCANNNNNNTGG	2 cut(s)	1288, 2093
BstYI	RGATCY	3 cut(s)	559, 2044, 2182
BstZ17I	GTATAC	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	2318
BsuI	GTATCC	1 cut(s)	2641
BsuRI	GGCC	9 cut(s)	411, 1179, 1308, 1370, 1412, 1814, 1997, 2387, 3109
BtgZI	GCGATG	1 cut(s)	3076
BtrI	CACGTC	1 cut(s)	785
BtsCI	GGATG	4 cut(s)	644, 1674, 2464, 2529
BtsI	GCAGTG	4 cut(s)	1432, 1655, 1750, 3000
BtsIMutI	CAGTG	9 cut(s)	1012, 1059, 1432, 1655, 1750, 1783, 2544, 2873, 3000
BveI	ACCTGC	1 cut(s)	1072
Cac8I	GCNNGC	8 cut(s)	20, 105, 138, 553, 1045, 1514, 2004, 2313
CaiI	CAGNNNCTG	2 cut(s)	2626, 3143
CfoI	GCGC	2 cut(s)	607, 1089
Cfr13I	GGNCC	2 cut(s)	494, 1995
CseI	GACGC	1 cut(s)	107
CsiI	ACCWGGT	1 cut(s)	2056
Csp6I	GTAC	8 cut(s)	1339, 1376, 1440, 2105, 2418, 2603, 3005, 3140
CviQI	GTAC	8 cut(s)	1339, 1376, 1440, 2105, 2418, 2603, 3005, 3140
DpnI	GATC	9 cut(s)	369, 561, 807, 846, 1624, 1845, 2046, 2184, 2281
DpnII	GATC	9 cut(s)	367, 559, 805, 844, 1622, 1843, 2044, 2182, 2279
DrdI	GACNNNNNNGTC	1 cut(s)	916
DriI	GACNNNNNGTC	2 cut(s)	67, 2060
DseDI	GACNNNNNNGTC	1 cut(s)	916
EaeI	YGGCCR	2 cut(s)	1177, 1410
Eam1104I	CTCTTC	2 cut(s)	2241, 3211
Eam1105I	GACNNNNNGTC	2 cut(s)	67, 2060
EarI	CTCTTC	2 cut(s)	2241, 3211
EciI	GGCGGA	2 cut(s)	113, 212
Eco105I	TACGTA	1 cut(s)	1379
Eco130I	CCWWGG	2 cut(s)	521, 1371
Eco147I	AGGCCT	3 cut(s)	411, 1308, 1370
Eco24I	GRGCYC	2 cut(s)	20, 1409
Eco31I	GGTCTC	1 cut(s)	1695
Eco32I	GATATC	2 cut(s)	1536, 2446
Eco47I	GGWCC	1 cut(s)	494
Eco47III	AGCGCT	1 cut(s)	606
Eco57I	CTGAAG	3 cut(s)	1323, 2457, 2993
Eco81I	CCTNAGG	1 cut(s)	2318
Eco91I	GGTNACC	1 cut(s)	1000
EcoO65I	GGTNACC	1 cut(s)	1000
EcoRI	GAATTC	3 cut(s)	447, 2915, 2939
EcoRII	CCWGG	5 cut(s)	451, 675, 1685, 2056, 2924
EcoRV	GATATC	2 cut(s)	1536, 2446
EcoT14I	CCWWGG	2 cut(s)	521, 1371
EcoT22I	ATGCAT	1 cut(s)	2074
EcoT38I	GRGCYC	2 cut(s)	20, 1409
ErhI	CCWWGG	2 cut(s)	521, 1371
Esp3I	CGTCTC	1 cut(s)	125
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 1505, 1537
FaqI	GGGAC	4 cut(s)	1137, 2289, 2343, 2511
FauNDI	CATATG	2 cut(s)	490, 1948
FbaI	TGATCA	2 cut(s)	844, 1843
FblI	GTMKAC	3 cut(s)	176, 781, 2053
FokI	GGATG	4 cut(s)	651, 1681, 2471, 2516
FriOI	GRGCYC	2 cut(s)	20, 1409
FspBI	CTAG	5 cut(s)	350, 903, 1044, 2663, 3171
GlaI	GCGC	2 cut(s)	606, 1088
GsaI	CCCAGC	1 cut(s)	611
GsuI	CTGGAG	3 cut(s)	553, 2139, 2370
HaeII	RGCGCY	1 cut(s)	608
HaeIII	GGCC	9 cut(s)	411, 1179, 1308, 1370, 1412, 1814, 1997, 2387, 3109
HapII	CCGG	7 cut(s)	39, 54, 172, 511, 963, 1218, 3055
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	2 cut(s)	607, 1089
Hin6I	GCGC	2 cut(s)	605, 1087
HinP1I	GCGC	2 cut(s)	605, 1087
HincII	GTYRAC	1 cut(s)	2054
HindII	GTYRAC	1 cut(s)	2054
HindIII	AAGCTT	4 cut(s)	549, 1661, 1871, 2297
HpaII	CCGG	7 cut(s)	39, 54, 172, 511, 963, 1218, 3055
Hpy166II	GTNNAC	5 cut(s)	177, 782, 1976, 2054, 3042
Hpy188III	TCNNGA	6 cut(s)	532, 688, 727, 1301, 1885, 2831
Hpy8I	GTNNAC	5 cut(s)	177, 782, 1976, 2054, 3042
Hpy99I	CGWCG	7 cut(s)	62, 65, 76, 116, 168, 1868, 3213
HpyAV	CCTTC	8 cut(s)	1117, 1298, 1547, 1630, 2201, 2319, 2476, 2715
HpyCH4III	ACNGT	7 cut(s)	50, 1132, 1465, 2169, 2548, 2788, 3052
HpyCH4IV	ACGT	4 cut(s)	215, 784, 1378, 2500
HpyF10VI	GCNNNNNNNGC	7 cut(s)	251, 593, 602, 912, 1367, 1994, 2003
HpySE526I	ACGT	4 cut(s)	215, 784, 1378, 2500
HspAI	GCGC	2 cut(s)	605, 1087
KpnI	GGTACC	1 cut(s)	1443
Ksp22I	TGATCA	2 cut(s)	844, 1843
Kzo9I	GATC	9 cut(s)	367, 559, 805, 844, 1622, 1843, 2044, 2182, 2279
LmnI	GCTCC	3 cut(s)	1250, 2374, 2657
Lsp1109I	GCAGC	8 cut(s)	241, 400, 574, 666, 953, 1669, 1783, 2594
LweI	GCATC	3 cut(s)	1056, 2059, 2356
MabI	ACCWGGT	1 cut(s)	2056
MaeI	CTAG	5 cut(s)	350, 903, 1044, 2663, 3171
MaeII	ACGT	4 cut(s)	215, 784, 1378, 2500
MalI	GATC	9 cut(s)	369, 561, 807, 846, 1624, 1845, 2046, 2184, 2281
MboI	GATC	9 cut(s)	367, 559, 805, 844, 1622, 1843, 2044, 2182, 2279
MfeI	CAATTG	3 cut(s)	333, 891, 1893
MflI	RGATCY	3 cut(s)	559, 2044, 2182
MhlI	GDGCHC	5 cut(s)	20, 235, 1409, 1657, 2662
MlsI	TGGCCA	1 cut(s)	1179
MluNI	TGGCCA	1 cut(s)	1179
MmeI	TCCRAC	4 cut(s)	110, 1991, 2044, 2563
Mox20I	TGGCCA	1 cut(s)	1179
Mph1103I	ATGCAT	1 cut(s)	2074
MroXI	GAANNNNTTC	3 cut(s)	951, 1962, 2216
MscI	TGGCCA	1 cut(s)	1179
MslI	CAYNNNNRTG	4 cut(s)	578, 686, 1286, 2155
Msp20I	TGGCCA	1 cut(s)	1179
MspA1I	CMGCKG	1 cut(s)	2731
MspI	CCGG	7 cut(s)	39, 54, 172, 511, 963, 1218, 3055
MspR9I	CCNGG	6 cut(s)	453, 511, 677, 1687, 2058, 2926
MunI	CAATTG	3 cut(s)	333, 891, 1893
MvaI	CCWGG	5 cut(s)	453, 677, 1687, 2058, 2926
MwoI	GCNNNNNNNGC	7 cut(s)	251, 593, 602, 912, 1367, 1994, 2003
NciI	CCSGG	1 cut(s)	511
NdeI	CATATG	2 cut(s)	490, 1948
NdeII	GATC	9 cut(s)	367, 559, 805, 844, 1622, 1843, 2044, 2182, 2279
NheI	GCTAGC	1 cut(s)	1043
NlaIV	GGNNCC	7 cut(s)	496, 852, 1252, 1441, 2046, 2727, 2835
NmeAIII	GCCGAG	1 cut(s)	1388
NmuCI	GTSAC	5 cut(s)	688, 701, 1264, 1276, 2995
NsiI	ATGCAT	1 cut(s)	2074
NspI	RCATGY	5 cut(s)	107, 239, 1395, 1485, 2336
PaeI	GCATGC	1 cut(s)	107
PaqCI	CACCTGC	1 cut(s)	1072
PceI	AGGCCT	3 cut(s)	411, 1308, 1370
PciI	ACATGT	1 cut(s)	2332
PdmI	GAANNNNTTC	3 cut(s)	951, 1962, 2216
PfeI	GAWTC	9 cut(s)	168, 272, 730, 2177, 2635, 2689, 2764, 2840, 3013
PfoI	TCCNGGA	1 cut(s)	451
Ppu21I	YACGTR	1 cut(s)	1379
PscI	ACATGT	1 cut(s)	2332
PshAI	GACNNNNGTC	2 cut(s)	1466, 2394
PshBI	ATTAAT	2 cut(s)	1017, 2571
PsiI	TTATAA	1 cut(s)	2642
Psp6I	CCWGG	5 cut(s)	451, 675, 1685, 2056, 2924
PspEI	GGTNACC	1 cut(s)	1000
PspFI	CCCAGC	1 cut(s)	607
PspGI	CCWGG	5 cut(s)	451, 675, 1685, 2056, 2924
PspN4I	GGNNCC	7 cut(s)	496, 852, 1252, 1441, 2046, 2727, 2835
PspPI	GGNCC	2 cut(s)	494, 1995
PstI	CTGCAG	4 cut(s)	390, 723, 1650, 2008
PstNI	CAGNNNCTG	2 cut(s)	2626, 3143
PsuI	RGATCY	3 cut(s)	559, 2044, 2182
RsaI	GTAC	8 cut(s)	1340, 1377, 1441, 2106, 2419, 2604, 3006, 3141
RsaNI	GTAC	8 cut(s)	1339, 1376, 1440, 2105, 2418, 2603, 3005, 3140
RseI	CAYNNNNRTG	4 cut(s)	578, 686, 1286, 2155
SalI	GTCGAC	1 cut(s)	2052
Sau3AI	GATC	9 cut(s)	367, 559, 805, 844, 1622, 1843, 2044, 2182, 2279
Sau96I	GGNCC	2 cut(s)	494, 1995
ScrFI	CCNGG	6 cut(s)	453, 511, 677, 1687, 2058, 2926
SduI	GDGCHC	5 cut(s)	20, 235, 1409, 1657, 2662
SexAI	ACCWGGT	1 cut(s)	2056
SfaNI	GCATC	3 cut(s)	1056, 2059, 2356
SfcI	CTRYAG	4 cut(s)	386, 719, 1646, 2004
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	4 cut(s)	578, 686, 1286, 2155
SmlI	CTYRAG	1 cut(s)	1658
SmoI	CTYRAG	1 cut(s)	1658
SnaBI	TACGTA	1 cut(s)	1379
SphI	GCATGC	1 cut(s)	107
SseBI	AGGCCT	3 cut(s)	411, 1308, 1370
SsiI	CCGC	5 cut(s)	124, 140, 197, 2559, 2729
SspI	AATATT	2 cut(s)	2518, 3204
SspMI	CTAG	5 cut(s)	350, 903, 1044, 2663, 3171
StuI	AGGCCT	3 cut(s)	411, 1308, 1370
StyD4I	CCNGG	6 cut(s)	451, 509, 675, 1685, 2056, 2924
StyI	CCWWGG	2 cut(s)	521, 1371
TaaI	ACNGT	7 cut(s)	50, 1132, 1465, 2169, 2548, 2788, 3052
TaiI	ACGT	4 cut(s)	218, 787, 1381, 2503
TaqI	TCGA	7 cut(s)	74, 114, 166, 1470, 2053, 2719, 3024
TatI	WGTACW	1 cut(s)	3004
TauI	GCSGC	2 cut(s)	143, 2561
TfiI	GAWTC	9 cut(s)	168, 272, 730, 2177, 2635, 2689, 2764, 2840, 3013
TscAI	CASTG	9 cut(s)	1012, 1066, 1432, 1655, 1750, 1790, 2551, 2880, 3000
TseFI	GTSAC	5 cut(s)	688, 701, 1264, 1276, 2995
TseI	GCWGC	8 cut(s)	254, 388, 587, 654, 966, 1682, 1796, 2582
Tsp45I	GTSAC	5 cut(s)	688, 701, 1264, 1276, 2995
TspDTI	ATGAA	9 cut(s)	1099, 1685, 1697, 1766, 1785, 1965, 2518, 2928, 2952
TspGWI	ACGGA	5 cut(s)	100, 265, 1646, 2210, 3197
TspRI	CASTG	9 cut(s)	1012, 1066, 1432, 1655, 1750, 1790, 2551, 2880, 3000
VpaK11BI	GGWCC	1 cut(s)	494
VspI	ATTAAT	2 cut(s)	1017, 2571
XapI	RAATTY	8 cut(s)	326, 447, 1229, 1672, 2525, 2904, 2915, 2939
XceI	RCATGY	5 cut(s)	107, 239, 1395, 1485, 2336
XcmI	CCANNNNNNNNNTGG	1 cut(s)	528
XmiI	GTMKAC	3 cut(s)	176, 781, 2053
XmnI	GAANNNNTTC	3 cut(s)	951, 1962, 2216
XspI	CTAG	5 cut(s)	350, 903, 1044, 2663, 3171
Zsp2I	ATGCAT	1 cut(s)	2074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.