Rh4CG093100

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
16881648 .. 16908357
26710 bp
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UTR
Exon/CDS
Intron
Rh4CG093100.1

Sequence Viewer

Length: 1707 bp
ATGACTGTTGTTGAGGCTTATGTTGGTGGGAAGAAAATCTATCCTTCAGACAATAAATCGCGATTGTCTCCAGTGCTATGGTCTTTAATTATTGAAAGCATTGCACAGAACACAAATGGCAGTGTCTACATGTCTGAGAATGGTGGTGATGTAGAGGTTTATGGATCACCAACTGAAAAAGCAATTCTGCGCTGGGGGATTAAGATTGGAATGAATTTTGAAGCCACGAAGTCTGAATCTACAGTTCTTCATGCGCTCGCATTTAACTCGGTGAAGAAACGAAGTGCTGTTGCACTTAAATTGGCCAATTCTCAAGTTCATATACACTGGAAAGGGGCTGCTGAAACAATCTTGGCCTCATGCACAAAGTACATTGATGCTAATGATCACTTGGTAGCAATGGATGAAGATAAGTTAATGTTTTTCAATGAAGCTATTGAGGGTATGGCTTCTGGAAGTCTGCGGTGTGTTGCTATTGCATATAGGTTATACGAGTTTGAAAATGTTCCGACTGATGAACAACTAGTTCGGTGGGCATTACCTGAGGATGACCTTATTTTACTTGCTATTGTTGGCATAGAGGATCCTTGTCAGCCAGGAGTCAGAGATGCAGTTCGACAATGCCAAAATGCTGGTGTTAAGGTATGCATGGTTACGGGTGACAATCTTCAAACAGCTAAAGCAATTGCTTTGGAGTGTGGCATACTTGGTTCCGAAGCAGATGCTACTGAACAAAATATCATTGAAGGAAGAGTATTTCGTGCCTTTTCTGATAAGCAAAGAGAAGATTTAGCTGAGATGATATCAGTGATGGGACGATCTTCGCCCAATGACAAGCTTCTTCTTGTGCAAGCACTGAAGAAAAGGGGACATGTTGTTGCTGTCACTGGTGATGGTTGTAATGATGCTCCTGCATTATATGAGGCCGATATTGGTCTTGCTATGGGTATTCAAGGGGCTGAAGTTGCTAAAGAGAGTTCAGATATAATCATCTTGGATGATAACTTTTCTACAATTGTGAAGGCTATCAAATGGGGTCGATCTGTATATTCAAATATTCAGAAATTTACCCAGTTCCATCTTACAGTTGGACTTGCAGCATTAATCATAAATGTCATGGCAGAAGTTTCCTCTGGTTCAGCTCCATTAAATGCTGTGCAGATTCTCTGGGTAAGCATTATCATGGACACTCAAGGAGCACTAGTATTGCGTACTGATCCACCATCTGATAACCTGATGCGGAAGCCTCCTGTTGATCGAAGGGAACCTCTTATTACAAATATAGTGTGGAGGAACTTGTTGGTTCAGTCTTTCTACCAAGTCACTATCTTGCTTATTCTAAATTTCCACGGAAGGAATTTGCTGAATTTGGAACTTGCTGATTACAATGTGATGAATACAATGATATTCAATGCTTTTGTTCTTTGTCAAATTTTCAATGAATTCAATGCTCGAAAGCCTGAGGAATATAACATTTTCAAAGGAATTACTTCAAACTATCTCTTTGTGGGAACAGTGGGAATAACTCTTGTGCTTCAGATTATTGTCATCGAGTTCCTTGGGAAATTTACTTCAACTGTGAGGCTTAACTTGAAGCAGTGGCTGATTTCCGTCATCATTGGTTTTATCAGTTGGCCCCTTGATGCTATCGGGAAACTCATACCAGTTCCAAAAACTCCCTTCATCAAGTTTGCCTTGAAGCGTTGA

Protein Analysis

568

Amino Acids

62.75

Weight (kDa)

5.8

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase PF13246 39 - 199 2.8e-28 P-type ATPase, cytoplasmic domain N
Hydrolase PF00702 186 - 309 2.2e-14 haloacid dehalogenase-like hydrolase
Cation_ATPase_C PF00689 381 - 554 3.8e-42 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AccII CGCG 1 cut(s) 61
AciI CCGC 2 cut(s) 463, 1240
AclWI GGATC 4 cut(s) 172, 578, 591, 1211
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 8 cut(s) 214, 1064, 1342, 1357, 1366, 1431, 1442, 1565
AcuI CTGAAG 4 cut(s) 30, 878, 981, 1520
AfaI GTAC 2 cut(s) 371, 1213
AflIII ACRYGT 2 cut(s) 129, 871
AhlI ACTAGT 2 cut(s) 523, 1201
AjnI CCWGG 1 cut(s) 595
AluBI AGCT 5 cut(s) 434, 677, 794, 838, 1142
AluI AGCT 5 cut(s) 434, 677, 794, 838, 1142
Alw21I GWGCWC 1 cut(s) 1201
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 4 cut(s) 172, 578, 591, 1211
AlwNI CAGNNNCTG 1 cut(s) 1603
AoxI GGCC 4 cut(s) 303, 354, 924, 1634
ApeKI GCWGC 2 cut(s) 338, 1097
ApoI RAATTY 8 cut(s) 214, 1064, 1342, 1357, 1366, 1431, 1442, 1565
AseI ATTAAT 1 cut(s) 1103
Asp700I GAANNNNTTC 2 cut(s) 504, 1489
AspLEI GCGC 2 cut(s) 192, 256
AspS9I GGNCC 1 cut(s) 1635
AsuHPI GGTGA 5 cut(s) 158, 159, 283, 671, 902
AxyI CCTNAGG 2 cut(s) 543, 1461
BalI TGGCCA 1 cut(s) 305
BamHI GGATCC 1 cut(s) 583
Bbv12I GWGCWC 1 cut(s) 1201
BbvI GCAGC 2 cut(s) 325, 1109
BccI CCATC 4 cut(s) 805, 887, 1086, 1231
BcgI CGANNNNNNTGC 4 cut(s) 249, 283, 704, 738
BciT130I CCWGG 1 cut(s) 597
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 72
BcuI ACTAGT 2 cut(s) 523, 1201
BfaI CTAG 2 cut(s) 524, 1202
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 2 cut(s) 339, 1098
BlsI GCNGC 2 cut(s) 340, 1099
Bme1390I CCNGG 1 cut(s) 597
BmgT120I GGNCC 1 cut(s) 1635
BmiI GGNNCC 4 cut(s) 585, 712, 1266, 1637
BmrFI CCNGG 1 cut(s) 597
BmrI ACTGGG 1 cut(s) 1066
BmsI GCATC 6 cut(s) 367, 598, 712, 895, 1227, 1633
BmuI ACTGGG 1 cut(s) 1066
BpmI CTGGAG 1 cut(s) 54
BpuEI CTTGAG 2 cut(s) 297, 1176
BsaJI CCNNGG 2 cut(s) 1348, 1558
BsaXI ACNNNNNCTCC 2 cut(s) 1188, 1218
Bse1I ACTGG 5 cut(s) 71, 332, 892, 1072, 1664
Bse21I CCTNAGG 2 cut(s) 543, 1461
Bse3DI GCAATG 2 cut(s) 99, 405
BseBI CCWGG 1 cut(s) 597
BseDI CCNNGG 2 cut(s) 1348, 1558
BseGI GGATG 3 cut(s) 409, 553, 1003
BseMI GCAATG 2 cut(s) 99, 405
BseMII CTCAG 4 cut(s) 126, 534, 786, 1452
BseNI ACTGG 5 cut(s) 71, 332, 892, 1072, 1664
BseXI GCAGC 2 cut(s) 325, 1109
BseYI CCCAGC 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 1178
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 4 cut(s) 305, 356, 926, 1636
BsiHKAI GWGCWC 1 cut(s) 1201
BslFI GGGAC 2 cut(s) 828, 882
BsmAI GTCTC 1 cut(s) 72
BsmFI GGGAC 2 cut(s) 828, 882
BsnI GGCC 4 cut(s) 305, 356, 926, 1636
Bsp1286I GDGCHC 1 cut(s) 1201
Bsp143I GATC 7 cut(s) 164, 385, 583, 818, 1040, 1216, 1255
Bsp68I TCGCGA 1 cut(s) 61
BspACI CCGC 2 cut(s) 463, 1240
BspANI GGCC 4 cut(s) 305, 356, 926, 1636
BspCNI CTCAG 4 cut(s) 127, 535, 787, 1453
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 4 cut(s) 585, 712, 1266, 1637
BspPI GGATC 4 cut(s) 172, 578, 591, 1211
BsrDI GCAATG 2 cut(s) 99, 405
BsrI ACTGG 5 cut(s) 71, 332, 892, 1072, 1664
BssECI CCNNGG 2 cut(s) 1348, 1558
BssMI GATC 7 cut(s) 164, 385, 583, 818, 1040, 1216, 1255
BssT1I CCWWGG 1 cut(s) 1558
Bst2UI CCWGG 1 cut(s) 597
Bst4CI ACNGT 5 cut(s) 7, 244, 1087, 1516, 1579
Bst6I CTCTTC 1 cut(s) 745
BstC8I GCNNGC 2 cut(s) 258, 852
BstDEI CTNAG 4 cut(s) 135, 543, 795, 1461
BstDSI CCRYGG 1 cut(s) 1348
BstF5I GGATG 3 cut(s) 409, 553, 1003
BstFNI CGCG 1 cut(s) 61
BstHHI GCGC 2 cut(s) 192, 256
BstKTI GATC 7 cut(s) 167, 388, 586, 821, 1043, 1219, 1258
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 7 cut(s) 164, 385, 583, 818, 1040, 1216, 1255
BstMWI GCNNNNNNNGC 1 cut(s) 965
BstNI CCWGG 1 cut(s) 597
BstNSI RCATGY 2 cut(s) 133, 875
BstSCI CCNGG 1 cut(s) 595
BstSFI CTRYAG 1 cut(s) 240
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 2 cut(s) 325, 1109
BstX2I RGATCY 1 cut(s) 583
BstXI CCANNNNNNTGG 2 cut(s) 78, 632
BstYI RGATCY 1 cut(s) 583
Bsu36I CCTNAGG 2 cut(s) 543, 1461
BsuRI GGCC 4 cut(s) 305, 356, 926, 1636
BtgI CCRYGG 1 cut(s) 1348
BtsCI GGATG 3 cut(s) 409, 553, 1003
BtsI GCAGTG 2 cut(s) 127, 1604
BtsIMutI CAGTG 8 cut(s) 78, 127, 325, 813, 854, 885, 1521, 1604
BtuMI TCGCGA 1 cut(s) 61
Cac8I GCNNGC 2 cut(s) 258, 852
CaiI CAGNNNCTG 1 cut(s) 1603
CfoI GCGC 2 cut(s) 192, 256
Cfr13I GGNCC 1 cut(s) 1635
Csp6I GTAC 2 cut(s) 370, 1212
CviAII CATG 7 cut(s) 130, 251, 360, 649, 872, 1117, 1183
CviQI GTAC 2 cut(s) 370, 1212
DdeI CTNAG 4 cut(s) 135, 543, 795, 1461
DpnI GATC 7 cut(s) 166, 387, 585, 820, 1042, 1218, 1257
DpnII GATC 7 cut(s) 164, 385, 583, 818, 1040, 1216, 1255
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 745
EarI CTCTTC 1 cut(s) 745
Eco130I CCWWGG 1 cut(s) 1558
Eco32I GATATC 1 cut(s) 804
Eco57I CTGAAG 4 cut(s) 30, 878, 981, 1520
Eco81I CCTNAGG 2 cut(s) 543, 1461
EcoRI GAATTC 1 cut(s) 1442
EcoRII CCWGG 1 cut(s) 595
EcoRV GATATC 1 cut(s) 804
EcoT14I CCWWGG 1 cut(s) 1558
EcoT22I ATGCAT 1 cut(s) 650
ErhI CCWWGG 1 cut(s) 1558
FaeI CATG 7 cut(s) 133, 254, 363, 652, 875, 1120, 1186
FalI AAGNNNNNCTT 1 cut(s) 1679
FaqI GGGAC 2 cut(s) 828, 882
FatI CATG 7 cut(s) 129, 250, 359, 648, 871, 1116, 1182
FbaI TGATCA 1 cut(s) 385
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 339, 1098
FokI GGATG 3 cut(s) 416, 560, 1010
Fsp4HI GCNGC 2 cut(s) 339, 1098
FspBI CTAG 2 cut(s) 524, 1202
GlaI GCGC 2 cut(s) 191, 255
GluI GCNGC 2 cut(s) 339, 1098
GsaI CCCAGC 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 4 cut(s) 305, 356, 926, 1636
HhaI GCGC 2 cut(s) 192, 256
Hin1II CATG 7 cut(s) 133, 254, 363, 652, 875, 1120, 1186
Hin6I GCGC 2 cut(s) 190, 254
HinP1I GCGC 2 cut(s) 190, 254
HindIII AAGCTT 1 cut(s) 836
HinfI GANTC 3 cut(s) 236, 600, 1162
HphI GGTGA 5 cut(s) 158, 159, 283, 671, 902
Hpy166II GTNNAC 1 cut(s) 127
Hpy188III TCNNGA 3 cut(s) 60, 453, 1651
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 6 cut(s) 54, 740, 1015, 1254, 1347, 1690
HpyCH4III ACNGT 5 cut(s) 7, 244, 1087, 1516, 1579
HpyF10VI GCNNNNNNNGC 1 cut(s) 965
HpyF3I CTNAG 4 cut(s) 135, 543, 795, 1461
Hsp92II CATG 7 cut(s) 133, 254, 363, 652, 875, 1120, 1186
HspAI GCGC 2 cut(s) 190, 254
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 7 cut(s) 164, 385, 583, 818, 1040, 1216, 1255
LmnI GCTCC 3 cut(s) 913, 1147, 1196
Lsp1109I GCAGC 2 cut(s) 325, 1109
LweI GCATC 6 cut(s) 367, 598, 712, 895, 1227, 1633
MaeI CTAG 2 cut(s) 524, 1202
MaeIII GTNAC 4 cut(s) 652, 659, 883, 1321
MalI GATC 7 cut(s) 166, 387, 585, 820, 1042, 1218, 1257
MboI GATC 7 cut(s) 164, 385, 583, 818, 1040, 1216, 1255
MfeI CAATTG 2 cut(s) 684, 1014
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 1 cut(s) 1201
MlsI TGGCCA 1 cut(s) 305
MluNI TGGCCA 1 cut(s) 305
MlyI GAGTC 1 cut(s) 609
MmeI TCCRAC 2 cut(s) 533, 1069
Mox20I TGGCCA 1 cut(s) 305
Mph1103I ATGCAT 1 cut(s) 650
MroXI GAANNNNTTC 2 cut(s) 504, 1489
MscI TGGCCA 1 cut(s) 305
MseI TTAA 9 cut(s) 86, 201, 264, 297, 416, 639, 1103, 1148, 1587
MslI CAYNNNNRTG 1 cut(s) 1181
Msp20I TGGCCA 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 597
MunI CAATTG 2 cut(s) 684, 1014
MvaI CCWGG 1 cut(s) 597
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 965
NdeII GATC 7 cut(s) 164, 385, 583, 818, 1040, 1216, 1255
NlaIII CATG 7 cut(s) 133, 254, 363, 652, 875, 1120, 1186
NlaIV GGNNCC 4 cut(s) 585, 712, 1266, 1637
NmuCI GTSAC 3 cut(s) 659, 883, 1321
NruI TCGCGA 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 650
NspI RCATGY 2 cut(s) 133, 875
PciI ACATGT 2 cut(s) 129, 871
PdmI GAANNNNTTC 2 cut(s) 504, 1489
PfeI GAWTC 2 cut(s) 236, 1162
PkrI GCNGC 2 cut(s) 340, 1099
PleI GAGTC 1 cut(s) 608
PpsI GAGTC 1 cut(s) 608
PscI ACATGT 2 cut(s) 129, 871
PshBI ATTAAT 1 cut(s) 1103
Psp6I CCWGG 1 cut(s) 595
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 1 cut(s) 595
PspN4I GGNNCC 4 cut(s) 585, 712, 1266, 1637
PspPI GGNCC 1 cut(s) 1635
PstNI CAGNNNCTG 1 cut(s) 1603
PsuI RGATCY 1 cut(s) 583
RruI TCGCGA 1 cut(s) 61
RsaI GTAC 2 cut(s) 371, 1213
RsaNI GTAC 2 cut(s) 370, 1212
RseI CAYNNNNRTG 1 cut(s) 1181
SaqAI TTAA 9 cut(s) 86, 201, 264, 297, 416, 639, 1103, 1148, 1587
SatI GCNGC 2 cut(s) 339, 1098
Sau3AI GATC 7 cut(s) 164, 385, 583, 818, 1040, 1216, 1255
Sau96I GGNCC 1 cut(s) 1635
SchI GAGTC 1 cut(s) 609
ScrFI CCNGG 1 cut(s) 597
SduI GDGCHC 1 cut(s) 1201
SfaNI GCATC 6 cut(s) 367, 598, 712, 895, 1227, 1633
SfcI CTRYAG 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 1181
SmlI CTYRAG 2 cut(s) 312, 1191
SmoI CTYRAG 2 cut(s) 312, 1191
SpeI ACTAGT 2 cut(s) 523, 1201
SsiI CCGC 2 cut(s) 463, 1240
SspI AATATT 1 cut(s) 1057
SspMI CTAG 2 cut(s) 524, 1202
StyD4I CCNGG 1 cut(s) 595
StyI CCWWGG 1 cut(s) 1558
TaaI ACNGT 5 cut(s) 7, 244, 1087, 1516, 1579
TaqI TCGA 5 cut(s) 616, 1039, 1258, 1453, 1551
TatI WGTACW 1 cut(s) 369
TfiI GAWTC 2 cut(s) 236, 1162
Tru1I TTAA 9 cut(s) 86, 201, 264, 297, 416, 639, 1103, 1148, 1587
Tru9I TTAA 9 cut(s) 86, 201, 264, 297, 416, 639, 1103, 1148, 1587
TscAI CASTG 8 cut(s) 78, 127, 332, 813, 861, 892, 1521, 1604
TseFI GTSAC 3 cut(s) 659, 883, 1321
TseI GCWGC 2 cut(s) 338, 1097
Tsp45I GTSAC 3 cut(s) 659, 883, 1321
TspDTI ATGAA 9 cut(s) 227, 239, 308, 420, 444, 531, 1409, 1455, 1672
TspGWI ACGGA 2 cut(s) 1365, 1600
TspRI CASTG 8 cut(s) 78, 127, 332, 813, 861, 892, 1521, 1604
VspI ATTAAT 1 cut(s) 1103
XapI RAATTY 8 cut(s) 214, 1064, 1342, 1357, 1366, 1431, 1442, 1565
XceI RCATGY 2 cut(s) 133, 875
XcmI CCANNNNNNNNNTGG 1 cut(s) 1085
XmiI GTMKAC 1 cut(s) 126
XmnI GAANNNNTTC 2 cut(s) 504, 1489
XspI CTAG 2 cut(s) 524, 1202
Zsp2I ATGCAT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.