Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003103

Physical Location & Seq

Genomic Coordinates Reverse (-)

13762189 .. 13772976

Gene Structure 10788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3252 bp

ATGAGTCAATCAACGGGCTCGCCGAACCAGAAAAACTATGATGAGGAAGCCGGAAAGAACCGTTCCGTCGACGACGAGGACTGCTTGAATGTCTTTGATTTTACCAGAACTAAGAATGCTTCCGTCGAGCGTCTCCGCCGTTGGAGGCAAGCGGCACTTGTGCTAAATGCTTCTCGTCGATTCCGGTATACCTTAGACTTGAAAAAGGAGGAAGAAAAAAAGAAGACGTTAAGCAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATTTCTTTTCAAGGAATCCGTACCACCGGAAAATGGAAATGTGCCACCAGAACCGAGTTTTGCTGGTGAATTTTCAATTGGACAAGAAGAACTAGCTTCAATTTCAAGGGATCATAATTTTACTACTCTGCAGCAATATGGGGGGGTCAAAGGCCTTGGAAAACTATTGAAAACAAGTTTAGAAAAGGGAATTCCTGGAAGTGATGATGATTTACTAAAACGAAAAACTGCATATGGAGCCAACACATATCCCCGGAAAAAACCAAGGAGTTTCTGGAGATTTCTCTGGGAAGCTTGCCAAGATCTTACTCTTATCATTTTGATGGTAGCTGCTGTGGCTTCTTTGGCGCTGGGTATAAAAACAGAGGGTATAAAGGAGGGATGGTATGATGGGGGCAGCATTGCTTTTGCAGTTCTCCTAGTCATTGTCGTGACAGCCATTAGTGACTACAAACAATCTCTGCAGTTCCAGAATCTAAATGAGGAAAAGAGAAATATACAAATTGAGGTTGTCAGAGGTGGTAGACGTGTTGAGGTTTCAATTTATGATCTTGTTGTTGGTGATGTTATACCCCTTAACATTGGTGATCAGGTTCCTGCTGATGGGGTTTTAATCACTGGTCATTCACTTTCAATTGATGAGTCTAGCATGACTGGCGAGTCCAAGATTGTTCGCAAGGACTCCAAAGAACCATTTCTAATGTCCGGCTGCAAAGTAGCAGATGGAAATGGTATAATGCTGGTAACCAGTGTTGGGATTAATACTGAATGGGGATTACTCATGGCTAGCATCTCGGAAGACACTGGTGAAGAAACACCCTTGCAGGTGCGCTTGAATGGGGTTGCTACCTTCATTGGTATTGTGGGGCTCACAGTAGCTTTCCTCGTCTTATGTGTCCTTTTGGTCAGATACTTTACTGGCCATACAACAAATGCAGATGGAACTCCTCAGTTTGTTGCCGGAAAGACAAAATTTGGGAAAGCCATAGATGGAGCCATCAAAATTGTCACTATTGCAGTCACCATTGTAGTGGTTGCTGTTCCTGAAGGCCTCCCTTTGGCTGTTACCTTAACACTTGCATACTCAATGAGAAAAATGATGGCAGATAAGGCCTTGGTACGTAGGCTTTCTGCATGTGAAACAATGGGCTCAGCCACTACTATATGCAGTGATAAGACTGGTACCTTAACTTTGAACCAGATGACTGTGGTCGAGTCTTGTGCATGTTTGAAGAAAGTCAATAACTCTGATGGCAAGCCAGACTTGTCGCCAAAAATATCGTCTTTGATTATTGAAGGCATAGCTCAGAATACAACTGGCAATGTTTATGTGCCTGAGACTGGTGGTGACGTAGAGGTTACTGGATCGCCAACAGAGAAGGCAATTCTGCAGTGGGCACTCAAGCTTGGGATGAATTTTGAAGCCACCAGGTCTCAATCTTCAATTCTTCATGTGTTCCCATTCAACTCTGAGAAAAAACGAGGCGGTGTAGCAGTTAAATTGCCAAACAATGAAGTTCATATACACTGGAAAGGGGCTGCTGAAATAATCTTGGCCTCATGCACAAGATACATTGACAACAATGATCAGGTGGCAGCAATGGACGACGACAAGATTATGTTTTTCAGGAAATCTATTGAGGATATGGCTGGTCGTAGTTTGCGTTGTGTTGCTATAGCATATTTACCATATGAATTGGAAAATGTTCCAACTGGTGAACAACAATTAGCTGATTGGGCAATGCCTGCAGATGACCTTGTTTTACTTGCTATTGTTGGTATAAAGGATCCTTGTCGACCAGGAGTCGCAGATGCAGTGAGACTATGCCAAAAGGCTGGCGTTAAGGTACGCATGGTTACTGGAGACAATGTTCAGACTGCAAAGGCAATAGCATTGGAATGTGGTATACTGCGTACTGATTCAGATCTTGGGGAGCATCTAATTGAAGGGAAAGACTTCCGTCAGCTTTCTGATTGGGAGAGAGAAGAGGTTGCTGAGAAAATCTCGGTAATGGGACGATCCTCTCCTAATGATAAGCTTCTGCTTGTGCAAGCGCTAAGGAGAAGGGGACATGTTGTTGCTGTTACTGGAGATGGCACTAATGATGCTCCTGCACTACATGAGGCCGACATTGGTCTTGCTATGGGTATTCAAGGTACTGAGGTTGCCAAAGAGAGTTCTGATATCATTATCCTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGACGTTCTGTATATGCAAATATTCAGAAATTCATCCAATTCCAACTCACTGTCAATGTTGCCGCACTTGTTATCAATGTGGTGGCAGCGATTTCCTCTGGTGAAGTACCACTAAATGCTGTTCAGCTTCTGTGGGTGAATCTTATAATGGATACTCTTGGAGCACTAGCATTGGCTACTGAGCCTCCTACGAATCATCTGATGGACAGACCTCCAGTTGGTCGAAGGGAACCACTGATAACTAATATAATGTGGAGGAACTTATTGATTCAGGCTATCTACCAAATTACGGTCCTCCTTATCTTCAATTTCCGAGGGAAAAGTATTCTCAAGCTGGAACATGATTCTACTGACCATGCGGACAAAGTGAAGAACACACTTATATTCAATACCTTTGTCCTCTGTCAAATTTTCAATGAATTCAATGCCAGGAAGCCGGATGAATTCAACATATTCAAAGGAATTACCAAAAATTATCTCTTTATGGGAATAATTGCAGTGACACTTGTACTTCAGATTCTCATTGTCGAGTTTCTGGGGAAGTTTACTACAACAGTCCGGCTTAACTGGAAGCATTGGTTGATTTCTGTTGTCATCGCTTTTATCAGTTGGCCTCTTGCTGTTGTTGGGAAGTTTATTCCAGTACCCAAAACTCCTTTCCACAGATATTTCACTAGGAGTCCTCTCTTTAAGTTTATAACCCGAATATTCCGTCGGCGAAGAGAGAGAACAGAGGCCTGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1083

Amino Acids

119.49

Weight (kDa)

8.49

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	32 - 72	2e-16	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	136 - 204	6.6e-14	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	258 - 353	1.6e-20	P-type ATPase actuator domain
Hydrolase	PF00702	478 - 800	1.6e-14	haloacid dehalogenase-like hydrolase
Cation_ATPase	PF13246	519 - 690	9.3e-32	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	871 - 1047	6.1e-45	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29900 AT4G29900 AT5G57110 AT5G57110 AT5G57110
fragaria_vesca	FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940
malus_domestica	MD13G1241000.v1.1 MD16G1245600.v1.1 MD16G1246100.v1.1
prunus_persica	Prupe.1G072600_v2.0.a1 Prupe.8G012900_v2.0.a1
pyrus_communis	pycom13g21220
rosa_chinensis	RchiOBHm_Chr4g0398891 RchiOBHm_Chr4g0398951
rosa_laevigata	RLG00000009307 RLG00000009309 RLG00000009365
rosa_multiflora	Rmu_sc0004094.1_g000033 Rmu_ssc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343340 Rroxscaffold_5G00343930 Rroxscaffold_5G00344000
rosa_rugosa	Rorug04G0013200
rosa_samantha	Rh4AG091100 Rh4CG093100 Rh4CG099100 Rh4CG099400
rosa_wichuraiana	Rw4G007100 Rw4G007130 Rw4G007500 Rw4G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2651, 3203
AarI	CACCTGC	1 cut(s)	1084
AasI	GACNNNNNNGTC	1 cut(s)	928
Acc36I	ACCTGC	1 cut(s)	1084
Acc65I	GGTACC	1 cut(s)	1451
AccB1I	GGYRCC	1 cut(s)	1451
AccI	GTMKAC	5 cut(s)	69, 188, 793, 2065, 2176
AciI	CCGC	5 cut(s)	136, 152, 1755, 2568, 2864
AclWI	GGATC	5 cut(s)	387, 1642, 2051, 2064, 2283
AcoI	YGGCCR	1 cut(s)	1189
AcsI	RAATTY	8 cut(s)	338, 459, 1241, 1684, 2534, 2913, 2924, 2948
AcuI	CTGAAG	3 cut(s)	1335, 2466, 3002
AfaI	GTAC	9 cut(s)	291, 1389, 1453, 2118, 2185, 2428, 2613, 3015, 3150
AfeI	AGCGCT	1 cut(s)	2325
AfiI	CCNNNNNNNGG	7 cut(s)	302, 872, 1023, 1327, 1610, 2723, 2794
AflIII	ACRYGT	2 cut(s)	796, 2341
AhdI	GACNNNNNGTC	1 cut(s)	2072
AjiI	CACGTC	1 cut(s)	797
AjnI	CCWGG	5 cut(s)	463, 1697, 2068, 2463, 2933
AjuI	GAANNNNNNNTTGG	4 cut(s)	330, 362, 3146, 3178
AloI	GAACNNNNNNTCC	2 cut(s)	2124, 2156
Alw21I	GWGCWC	2 cut(s)	247, 2671
Alw26I	GTCTC	5 cut(s)	137, 1601, 1707, 2083, 2127
AlwI	GGATC	5 cut(s)	387, 1642, 2051, 2064, 2283
AlwNI	CAGNNNCTG	1 cut(s)	2635
Aor51HI	AGCGCT	1 cut(s)	2325
AoxI	GGCC	8 cut(s)	421, 1189, 1318, 1380, 1824, 2394, 3116, 3240
ApeKI	GCWGC	8 cut(s)	266, 400, 599, 666, 978, 1808, 1865, 2591
ApoI	RAATTY	8 cut(s)	338, 459, 1241, 1684, 2534, 2913, 2924, 2948
ArsI	GACNNNNNNTTYG	4 cut(s)	1535, 1567, 3202, 3234
AseI	ATTAAT	1 cut(s)	1029
Asp700I	GAANNNNTTC	3 cut(s)	963, 1974, 2225
Asp718I	GGTACC	1 cut(s)	1451
AspLEI	GCGC	3 cut(s)	619, 1101, 2326
AspS9I	GGNCC	1 cut(s)	2797
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	9 cut(s)	347, 842, 866, 1088, 1282, 1628, 1997, 2618, 2653
AsuNHI	GCTAGC	1 cut(s)	1055
AvaII	GGWCC	1 cut(s)	2797
BaeGI	GKGCMC	1 cut(s)	1669
BaeI	ACNNNNGTAYC	2 cut(s)	2418, 2451
BalI	TGGCCA	1 cut(s)	1191
BamHI	GGATCC	1 cut(s)	2056
BanI	GGYRCC	1 cut(s)	1451
BanII	GRGCYC	3 cut(s)	20, 1140, 1421
BarI	GAAGNNNNNNTAC	2 cut(s)	1776, 1808
BbsI	GAAGAC	2 cut(s)	230, 1074
Bbv12I	GWGCWC	2 cut(s)	247, 2671
BbvI	GCAGC	8 cut(s)	253, 412, 586, 678, 965, 1795, 1877, 2603
BceAI	ACGGC	1 cut(s)	123
BcgI	CGANNNNNNTGC	2 cut(s)	1472, 1506
BciT130I	CCWGG	5 cut(s)	465, 1699, 2070, 2465, 2935
BciVI	GTATCC	1 cut(s)	2650
BclI	TGATCA	2 cut(s)	856, 1855
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	5 cut(s)	137, 1601, 1707, 2083, 2127
BfaI	CTAG	6 cut(s)	362, 689, 915, 1056, 2672, 3180
BfmI	CTRYAG	5 cut(s)	398, 731, 1658, 1944, 2016
BfoI	RGCGCY	2 cut(s)	620, 2327
BfuAI	ACCTGC	1 cut(s)	1084
BfuI	GTATCC	1 cut(s)	2650
BglII	AGATCT	2 cut(s)	571, 2194
BlpI	GCTNAGC	1 cut(s)	1420
Bme1390I	CCNGG	6 cut(s)	465, 523, 1699, 2070, 2465, 2935
Bme18I	GGWCC	1 cut(s)	2797
BmeRI	GACNNNNNGTC	1 cut(s)	2072
BmgBI	CACGTC	1 cut(s)	797
BmgT120I	GGNCC	1 cut(s)	2797
BmiI	GGNNCC	6 cut(s)	508, 864, 1264, 1453, 2058, 2736
BmrFI	CCNGG	6 cut(s)	465, 523, 1699, 2070, 2465, 2935
BmsI	GCATC	4 cut(s)	1068, 2071, 2215, 2365
BmtI	GCTAGC	1 cut(s)	1059
BoxI	GACNNNNGTC	3 cut(s)	1478, 2229, 2403
BpiI	GAAGAC	2 cut(s)	230, 1074
BplI	GAGNNNNNCTC	2 cut(s)	2258, 2290
BpmI	CTGGAG	4 cut(s)	565, 2151, 2379, 2703
Bpu10I	CCTNAGC	1 cut(s)	2327
Bpu1102I	GCTNAGC	1 cut(s)	1420
BpuEI	CTTGAG	2 cut(s)	1655, 2819
BpuMI	CCSGG	1 cut(s)	523
BsaAI	YACGTR	1 cut(s)	1391
BsaBI	GATNNNNATC	1 cut(s)	2193
BsaI	GGTCTC	1 cut(s)	1707
BsaJI	CCNNGG	5 cut(s)	424, 521, 533, 1383, 2818
BsaWI	WCCGGW	2 cut(s)	183, 295
BsaXI	ACNNNNNCTCC	6 cut(s)	638, 668, 2124, 2154, 2674, 2704
Bsc4I	CCNNNNNNNGG	7 cut(s)	302, 872, 1023, 1327, 1610, 2723, 2794
Bse3DI	GCAATG	4 cut(s)	669, 1597, 1875, 2016
Bse8I	GATNNNNATC	1 cut(s)	2193
BseBI	CCWGG	5 cut(s)	465, 1699, 2070, 2465, 2935
BseDI	CCNNGG	5 cut(s)	424, 521, 533, 1383, 2818
BseGI	GGATG	5 cut(s)	656, 1686, 2473, 2538, 2950
BseJI	GATNNNNATC	1 cut(s)	2193
BseLI	CCNNNNNNNGG	7 cut(s)	302, 872, 1023, 1327, 1610, 2723, 2794
BseMI	GCAATG	4 cut(s)	669, 1597, 1875, 2016
BseMII	CTCAG	8 cut(s)	1232, 1434, 1589, 1596, 1731, 2256, 2421, 2676
BseRI	GAGGAG	1 cut(s)	1206
BseSI	GKGCMC	1 cut(s)	1669
BseXI	GCAGC	8 cut(s)	253, 412, 586, 678, 965, 1795, 1877, 2603
BseYI	CCCAGC	1 cut(s)	619
BsgI	GTGCAG	1 cut(s)	2367
BshFI	GGCC	8 cut(s)	423, 1191, 1320, 1382, 1826, 2396, 3118, 3242
BshNI	GGYRCC	1 cut(s)	1451
BsiHKAI	GWGCWC	2 cut(s)	247, 2671
BsiSI	CCGG	8 cut(s)	51, 184, 296, 523, 975, 1230, 2942, 3064
BslFI	GGGAC	3 cut(s)	2298, 2352, 2520
BslI	CCNNNNNNNGG	7 cut(s)	302, 872, 1023, 1327, 1610, 2723, 2794
BsmAI	GTCTC	5 cut(s)	137, 1601, 1707, 2083, 2127
BsmBI	CGTCTC	1 cut(s)	137
BsmFI	GGGAC	3 cut(s)	2298, 2352, 2520
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	8 cut(s)	423, 1191, 1320, 1382, 1826, 2396, 3118, 3242
Bso31I	GGTCTC	1 cut(s)	1707
Bsp1286I	GDGCHC	6 cut(s)	20, 247, 1140, 1421, 1669, 2671
Bsp143I	GATC	9 cut(s)	379, 571, 817, 856, 1634, 1855, 2056, 2194, 2288
Bsp1720I	GCTNAGC	1 cut(s)	1420
BspACI	CCGC	5 cut(s)	136, 152, 1755, 2568, 2864
BspANI	GGCC	8 cut(s)	423, 1191, 1320, 1382, 1826, 2396, 3118, 3242
BspCNI	CTCAG	8 cut(s)	1231, 1433, 1588, 1597, 1732, 2257, 2422, 2677
BspLI	GGNNCC	6 cut(s)	508, 864, 1264, 1453, 2058, 2736
BspMAI	CTGCAG	4 cut(s)	402, 735, 1662, 2020
BspMI	ACCTGC	1 cut(s)	1084
BspOI	GCTAGC	1 cut(s)	1059
BspPI	GGATC	5 cut(s)	387, 1642, 2051, 2064, 2283
BspT107I	GGYRCC	1 cut(s)	1451
BspTNI	GGTCTC	1 cut(s)	1707
BsrDI	GCAATG	4 cut(s)	669, 1597, 1875, 2016
BssECI	CCNNGG	5 cut(s)	424, 521, 533, 1383, 2818
BssMI	GATC	9 cut(s)	379, 571, 817, 856, 1634, 1855, 2056, 2194, 2288
BssNAI	GTATAC	2 cut(s)	189, 2177
BssT1I	CCWWGG	3 cut(s)	424, 533, 1383
Bst1107I	GTATAC	2 cut(s)	189, 2177
Bst2UI	CCWGG	5 cut(s)	465, 1699, 2070, 2465, 2935
Bst4CI	ACNGT	6 cut(s)	62, 1144, 1477, 2557, 2797, 3061
Bst6I	CTCTTC	2 cut(s)	2250, 3220
BstAPI	GCANNNNNTGC	1 cut(s)	2015
BstBAI	YACGTR	1 cut(s)	1391
BstC8I	GCNNGC	8 cut(s)	20, 150, 565, 1057, 1526, 2016, 2107, 2322
BstEII	GGTNACC	1 cut(s)	1012
BstF5I	GGATG	5 cut(s)	656, 1686, 2473, 2538, 2950
BstH2I	RGCGCY	2 cut(s)	620, 2327
BstHHI	GCGC	3 cut(s)	619, 1101, 2326
BstKTI	GATC	9 cut(s)	382, 574, 820, 859, 1637, 1858, 2059, 2197, 2291
BstMAI	GTCTC	5 cut(s)	137, 1601, 1707, 2083, 2127
BstMBI	GATC	9 cut(s)	379, 571, 817, 856, 1634, 1855, 2056, 2194, 2288
BstMWI	GCNNNNNNNGC	8 cut(s)	263, 506, 605, 614, 924, 1379, 2006, 2015
BstNI	CCWGG	5 cut(s)	465, 1699, 2070, 2465, 2935
BstNSI	RCATGY	4 cut(s)	251, 1407, 1497, 2345
BstPAI	GACNNNNGTC	3 cut(s)	1478, 2229, 2403
BstPI	GGTNACC	1 cut(s)	1012
BstSCI	CCNGG	6 cut(s)	463, 521, 1697, 2068, 2463, 2933
BstSFI	CTRYAG	5 cut(s)	398, 731, 1658, 1944, 2016
BstSLI	GKGCMC	1 cut(s)	1669
BstSNI	TACGTA	1 cut(s)	1391
BstV1I	GCAGC	8 cut(s)	253, 412, 586, 678, 965, 1795, 1877, 2603
BstV2I	GAAGAC	2 cut(s)	230, 1074
BstX2I	RGATCY	3 cut(s)	571, 2056, 2194
BstXI	CCANNNNNNTGG	2 cut(s)	1300, 2105
BstYI	RGATCY	3 cut(s)	571, 2056, 2194
BstZ17I	GTATAC	2 cut(s)	189, 2177
BsuI	GTATCC	1 cut(s)	2650
BsuRI	GGCC	8 cut(s)	423, 1191, 1320, 1382, 1826, 2396, 3118, 3242
BtgZI	GCGATG	1 cut(s)	3085
BtrI	CACGTC	1 cut(s)	797
BtsCI	GGATG	5 cut(s)	656, 1686, 2473, 2538, 2950
BtsI	GCAGTG	4 cut(s)	1444, 1667, 2091, 3009
BveI	ACCTGC	1 cut(s)	1084
Cac8I	GCNNGC	8 cut(s)	20, 150, 565, 1057, 1526, 2016, 2107, 2322
CaiI	CAGNNNCTG	1 cut(s)	2635
CfoI	GCGC	3 cut(s)	619, 1101, 2326
Cfr13I	GGNCC	1 cut(s)	2797
CseI	GACGC	1 cut(s)	119
CsiI	ACCWGGT	1 cut(s)	1697
Csp6I	GTAC	9 cut(s)	290, 1388, 1452, 2117, 2184, 2427, 2612, 3014, 3149
CviQI	GTAC	9 cut(s)	290, 1388, 1452, 2117, 2184, 2427, 2612, 3014, 3149
DpnI	GATC	9 cut(s)	381, 573, 819, 858, 1636, 1857, 2058, 2196, 2290
DpnII	GATC	9 cut(s)	379, 571, 817, 856, 1634, 1855, 2056, 2194, 2288
DrdI	GACNNNNNNGTC	1 cut(s)	928
DriI	GACNNNNNGTC	1 cut(s)	2072
DseDI	GACNNNNNNGTC	1 cut(s)	928
EaeI	YGGCCR	1 cut(s)	1189
Eam1104I	CTCTTC	2 cut(s)	2250, 3220
Eam1105I	GACNNNNNGTC	1 cut(s)	2072
EarI	CTCTTC	2 cut(s)	2250, 3220
EciI	GGCGGA	1 cut(s)	125
Eco105I	TACGTA	1 cut(s)	1391
Eco130I	CCWWGG	3 cut(s)	424, 533, 1383
Eco147I	AGGCCT	4 cut(s)	423, 1320, 1382, 3242
Eco24I	GRGCYC	3 cut(s)	20, 1140, 1421
Eco31I	GGTCTC	1 cut(s)	1707
Eco32I	GATATC	1 cut(s)	2455
Eco47I	GGWCC	1 cut(s)	2797
Eco47III	AGCGCT	1 cut(s)	2325
Eco57I	CTGAAG	3 cut(s)	1335, 2466, 3002
Eco91I	GGTNACC	1 cut(s)	1012
EcoO65I	GGTNACC	1 cut(s)	1012
EcoRI	GAATTC	3 cut(s)	459, 2924, 2948
EcoRII	CCWGG	5 cut(s)	463, 1697, 2068, 2463, 2933
EcoRV	GATATC	1 cut(s)	2455
EcoT14I	CCWWGG	3 cut(s)	424, 533, 1383
EcoT38I	GRGCYC	3 cut(s)	20, 1140, 1421
ErhI	CCWWGG	3 cut(s)	424, 533, 1383
Esp3I	CGTCTC	1 cut(s)	137
FalI	AAGNNNNNCTT	4 cut(s)	141, 173, 1517, 1549
FaqI	GGGAC	3 cut(s)	2298, 2352, 2520
FauNDI	CATATG	2 cut(s)	502, 1960
FbaI	TGATCA	2 cut(s)	856, 1855
FblI	GTMKAC	5 cut(s)	69, 188, 793, 2065, 2176
FokI	GGATG	5 cut(s)	663, 1693, 2480, 2525, 2957
FriOI	GRGCYC	3 cut(s)	20, 1140, 1421
FspBI	CTAG	6 cut(s)	362, 689, 915, 1056, 2672, 3180
GlaI	GCGC	3 cut(s)	618, 1100, 2325
GsaI	CCCAGC	1 cut(s)	623
GsuI	CTGGAG	4 cut(s)	565, 2151, 2379, 2703
HaeII	RGCGCY	2 cut(s)	620, 2327
HaeIII	GGCC	8 cut(s)	423, 1191, 1320, 1382, 1826, 2396, 3118, 3242
HapII	CCGG	8 cut(s)	51, 184, 296, 523, 975, 1230, 2942, 3064
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	3 cut(s)	619, 1101, 2326
Hin6I	GCGC	3 cut(s)	617, 1099, 2324
HinP1I	GCGC	3 cut(s)	617, 1099, 2324
HincII	GTYRAC	2 cut(s)	70, 2066
HindII	GTYRAC	2 cut(s)	70, 2066
HindIII	AAGCTT	3 cut(s)	561, 1673, 2306
HpaII	CCGG	8 cut(s)	51, 184, 296, 523, 975, 1230, 2942, 3064
HphI	GGTGA	9 cut(s)	347, 842, 866, 1088, 1282, 1628, 1997, 2618, 2653
Hpy166II	GTNNAC	7 cut(s)	70, 189, 794, 1988, 2066, 2177, 3051
Hpy188III	TCNNGA	5 cut(s)	544, 700, 739, 1313, 1897
Hpy8I	GTNNAC	7 cut(s)	70, 189, 794, 1988, 2066, 2177, 3051
Hpy99I	CGWCG	7 cut(s)	71, 74, 77, 128, 180, 1880, 3222
HpyAV	CCTTC	8 cut(s)	1129, 1310, 1559, 1642, 2210, 2328, 2485, 2724
HpyCH4III	ACNGT	6 cut(s)	62, 1144, 1477, 2557, 2797, 3061
HpyCH4IV	ACGT	5 cut(s)	227, 796, 1390, 1620, 2509
HpyF10VI	GCNNNNNNNGC	8 cut(s)	263, 506, 605, 614, 924, 1379, 2006, 2015
HpySE526I	ACGT	5 cut(s)	227, 796, 1390, 1620, 2509
HspAI	GCGC	3 cut(s)	617, 1099, 2324
KpnI	GGTACC	1 cut(s)	1455
Ksp22I	TGATCA	2 cut(s)	856, 1855
Kzo9I	GATC	9 cut(s)	379, 571, 817, 856, 1634, 1855, 2056, 2194, 2288
LmnI	GCTCC	5 cut(s)	506, 1262, 2203, 2383, 2666
Lsp1109I	GCAGC	8 cut(s)	253, 412, 586, 678, 965, 1795, 1877, 2603
LweI	GCATC	4 cut(s)	1068, 2071, 2215, 2365
MabI	ACCWGGT	1 cut(s)	1697
MaeI	CTAG	6 cut(s)	362, 689, 915, 1056, 2672, 3180
MaeII	ACGT	5 cut(s)	227, 796, 1390, 1620, 2509
MalI	GATC	9 cut(s)	381, 573, 819, 858, 1636, 1857, 2058, 2196, 2290
MboI	GATC	9 cut(s)	379, 571, 817, 856, 1634, 1855, 2056, 2194, 2288
MfeI	CAATTG	2 cut(s)	345, 903
MflI	RGATCY	3 cut(s)	571, 2056, 2194
MhlI	GDGCHC	6 cut(s)	20, 247, 1140, 1421, 1669, 2671
MlsI	TGGCCA	1 cut(s)	1191
MluNI	TGGCCA	1 cut(s)	1191
MlyI	GAGTC	7 cut(s)	13, 920, 938, 944, 1493, 2082, 3193
MmeI	TCCRAC	3 cut(s)	122, 2003, 2572
Mox20I	TGGCCA	1 cut(s)	1191
MroXI	GAANNNNTTC	3 cut(s)	963, 1974, 2225
MscI	TGGCCA	1 cut(s)	1191
MslI	CAYNNNNRTG	4 cut(s)	590, 698, 1298, 2167
Msp20I	TGGCCA	1 cut(s)	1191
MspI	CCGG	8 cut(s)	51, 184, 296, 523, 975, 1230, 2942, 3064
MspR9I	CCNGG	6 cut(s)	465, 523, 1699, 2070, 2465, 2935
MunI	CAATTG	2 cut(s)	345, 903
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	5 cut(s)	465, 1699, 2070, 2465, 2935
MwoI	GCNNNNNNNGC	8 cut(s)	263, 506, 605, 614, 924, 1379, 2006, 2015
NciI	CCSGG	1 cut(s)	523
NdeI	CATATG	2 cut(s)	502, 1960
NdeII	GATC	9 cut(s)	379, 571, 817, 856, 1634, 1855, 2056, 2194, 2288
NheI	GCTAGC	1 cut(s)	1055
NlaIV	GGNNCC	6 cut(s)	508, 864, 1264, 1453, 2058, 2736
NmuCI	GTSAC	6 cut(s)	700, 713, 1276, 1288, 1616, 3004
NspI	RCATGY	4 cut(s)	251, 1407, 1497, 2345
PaqCI	CACCTGC	1 cut(s)	1084
PceI	AGGCCT	4 cut(s)	423, 1320, 1382, 3242
PciI	ACATGT	1 cut(s)	2341
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 1930
PctI	GAATGC	1 cut(s)	121
PdmI	GAANNNNTTC	3 cut(s)	963, 1974, 2225
PfeI	GAWTC	9 cut(s)	180, 284, 742, 2189, 2644, 2698, 2773, 2849, 3022
PfoI	TCCNGGA	2 cut(s)	463, 2463
PleI	GAGTC	7 cut(s)	12, 919, 937, 944, 1492, 2081, 3192
PpsI	GAGTC	7 cut(s)	12, 919, 937, 944, 1492, 2081, 3192
Ppu21I	YACGTR	1 cut(s)	1391
PscI	ACATGT	1 cut(s)	2341
PshAI	GACNNNNGTC	3 cut(s)	1478, 2229, 2403
PshBI	ATTAAT	1 cut(s)	1029
PsiI	TTATAA	2 cut(s)	2651, 3203
Psp6I	CCWGG	5 cut(s)	463, 1697, 2068, 2463, 2933
PspEI	GGTNACC	1 cut(s)	1012
PspFI	CCCAGC	1 cut(s)	619
PspGI	CCWGG	5 cut(s)	463, 1697, 2068, 2463, 2933
PspN4I	GGNNCC	6 cut(s)	508, 864, 1264, 1453, 2058, 2736
PspPI	GGNCC	1 cut(s)	2797
PstI	CTGCAG	4 cut(s)	402, 735, 1662, 2020
PstNI	CAGNNNCTG	1 cut(s)	2635
PsuI	RGATCY	3 cut(s)	571, 2056, 2194
RsaI	GTAC	9 cut(s)	291, 1389, 1453, 2118, 2185, 2428, 2613, 3015, 3150
RsaNI	GTAC	9 cut(s)	290, 1388, 1452, 2117, 2184, 2427, 2612, 3014, 3149
RseI	CAYNNNNRTG	4 cut(s)	590, 698, 1298, 2167
SalI	GTCGAC	2 cut(s)	68, 2064
Sau3AI	GATC	9 cut(s)	379, 571, 817, 856, 1634, 1855, 2056, 2194, 2288
Sau96I	GGNCC	1 cut(s)	2797
SchI	GAGTC	7 cut(s)	13, 920, 938, 944, 1493, 2082, 3193
ScrFI	CCNGG	6 cut(s)	465, 523, 1699, 2070, 2465, 2935
SduI	GDGCHC	6 cut(s)	20, 247, 1140, 1421, 1669, 2671
SexAI	ACCWGGT	1 cut(s)	1697
SfaNI	GCATC	4 cut(s)	1068, 2071, 2215, 2365
SfcI	CTRYAG	5 cut(s)	398, 731, 1658, 1944, 2016
SgrDI	CGTCGACG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	2797
SmiMI	CAYNNNNRTG	4 cut(s)	590, 698, 1298, 2167
SmlI	CTYRAG	2 cut(s)	1670, 2834
SmoI	CTYRAG	2 cut(s)	1670, 2834
SnaBI	TACGTA	1 cut(s)	1391
SseBI	AGGCCT	4 cut(s)	423, 1320, 1382, 3242
SsiI	CCGC	5 cut(s)	136, 152, 1755, 2568, 2864
SspI	AATATT	2 cut(s)	2527, 3213
SspMI	CTAG	6 cut(s)	362, 689, 915, 1056, 2672, 3180
StuI	AGGCCT	4 cut(s)	423, 1320, 1382, 3242
StyD4I	CCNGG	6 cut(s)	463, 521, 1697, 2068, 2463, 2933
StyI	CCWWGG	3 cut(s)	424, 533, 1383
TaaI	ACNGT	6 cut(s)	62, 1144, 1477, 2557, 2797, 3061
TaiI	ACGT	5 cut(s)	230, 799, 1393, 1623, 2512
TaqI	TCGA	7 cut(s)	69, 126, 178, 1482, 2065, 2728, 3033
TatI	WGTACW	1 cut(s)	3013
TauI	GCSGC	2 cut(s)	155, 2570
TfiI	GAWTC	9 cut(s)	180, 284, 742, 2189, 2644, 2698, 2773, 2849, 3022
TseFI	GTSAC	6 cut(s)	700, 713, 1276, 1288, 1616, 3004
TseI	GCWGC	8 cut(s)	266, 400, 599, 666, 978, 1808, 1865, 2591
Tsp45I	GTSAC	6 cut(s)	700, 713, 1276, 1288, 1616, 3004
TspDTI	ATGAA	9 cut(s)	1111, 1697, 1709, 1778, 1797, 1977, 2527, 2937, 2961
TspGWI	ACGGA	5 cut(s)	55, 112, 277, 2219, 3206
VpaK11BI	GGWCC	1 cut(s)	2797
VspI	ATTAAT	1 cut(s)	1029
XapI	RAATTY	8 cut(s)	338, 459, 1241, 1684, 2534, 2913, 2924, 2948
XceI	RCATGY	4 cut(s)	251, 1407, 1497, 2345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	540
XmiI	GTMKAC	5 cut(s)	69, 188, 793, 2065, 2176
XmnI	GAANNNNTTC	3 cut(s)	963, 1974, 2225
XspI	CTAG	6 cut(s)	362, 689, 915, 1056, 2672, 3180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.