Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003103

Physical Location & Seq

Genomic Coordinates Reverse (-)

17973475 .. 17983668

Gene Structure 10194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG099100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3168 bp

ATGAGTCAATCAACGGGCTCGCCGAACCAGAAAAACTATGATGAGGAAGCCGGAACCAACCGTTCCGGCGACGACGAGGACTGCTCGAGTGTTTTTGAGATTGCCAGAACTAAGAATGCTTCCGTCGAGCGTCTCCGCCGTTGGAGGCAAGCGGCACTTGTGCTAAATGCTTCTCGTCGATTCCGGTATACCTTAGACTTGAAAAAGGAGGAAGAAAAAAAGAAGACGTTAAGCAAGATTAGAGCACATGCAGAAGTCATACGAGCTGCATTTATTTTCCAGAAATCCATAACACAGGAAAATGGAATTGTGCCACCAAAACCAAGTTCTGCTGGTGAATTTCCAATTGGACAAGAAGAACTAGCTTCAATTTCAAGGGATCATAATTTTACTACTCTGCAGCAATATGGGGGGGTCAAAGGCCTCGGAGAATTATTGAAAACAAGTTTAGAAAAGGGAATTCCTGGAAGTGATGATGATTTACTAAAACGAAAAACTGCATATGGATCCAACACATATCCCCGGAAAAAACCAAGGAGTTTCTGGAGATTTCTCTGGGAAGCTTGCCAAGATCTTACTCTTATCATTTTGATGGTAGCTGCTGTGGCTTCTTTAGCGCTGGGTATAAAAACAGAGGGTATAAAGGAGGGATGGTATGATGGGGGCAGCATTGCTTTTGCAGTTCTCCTAGTCATTGTTGTGACAGCCATTAGTGACTACAAACAATCTCTGCAGTTCCAGAATCTAAATGAGGAAAAGAGAAATATACAAATTGAGGTTGTCAGAGGTGGTCGACGTGTTGAGGTTTCAATTTATGATCTTGTTGTAGGTGATGTTATACCCCTTAACATTGGTGATCAGGTTCCTGCTGATGGGGTTTTAATCACTGGTCATTCACTTTCAATTGATGAGTCCAGCATGACTGGCGAGTCCAAGATTGTTCGCAAGGACTCCAAAGAACCATTTCTAATGTCCGGCTGCAAAGTAGCAGATGGAAATGGTATAATGCTGGTGCGCTTGAATGGGGTTGCTACCTTCATTGGTATTGTGGGGCTCACAGTAGCTCTCCTCGTCTTATGTGTCCTTTTGGTCAGATACTTTACTGGCCATACAACAAATGCAGATGGAACTCCTCAGTTTGTTGCCGGAAAGACAAAATTTGGGAAAGCCATAGATGGAGCCATCAAAATTGTCACTATTGCAGTCACCATTGTAGTGGTTGCTGTTCCTGAAGGCCTCCCCTTGGCTGTTACCTTAACACTTGCGTACTCAATGAGAAAAATGATGGCAGATAAGGCCTTGGTACGTAGGCTTTCTGCATGTGAAACAATGGGCTCGGCCACTACTATATGCAGTGATAAGACTGGTACCTTAACTTTGAACCAGATGACTGTGGTCGAGTCTTGTGCATGTTTGAAGAAAGTCAATAACTCTGATGGCAAGCCAGACTTGTCGCCAAAAATATCGTCTTTGATTATTGAAGGCATAGCTCAGAATACAACTGGCAATGTTTATGTGCCTGAGACTGGTGGTGACGTAGAGGTTACTGGATCACCAACAGAGAAGGCAATTCTGCAGTGGGCACTCAAGCTTGGGATGAATTTTGAAGCCACCAGGTCTCAGTCTTCAATTCTTCATGTGTTCCCATTCAACTCTGAGAAAAAACGAGGCGGTGTAGCAGTTAAATTGCCAAACAATGAAGTTCATATACACTGGAAAGGGGCTGCTGAAATAATCTTGGCCTCATGCACAAGATACATTGACGGCAATGATCAGGTGGCAGCAATGGACGACGACAAGATTATGTTTTTCAGGAAATCTATTGAGGATATGGCTGGTCGTAGTTTGCGTTGTGTTGCTATAGCATATTTACCATATGAATTGGAAAATGTTCCAACTGGTGAACAACAATTAGCTGATTGGGCAATGCCTGCAGATGGCCTTGTTTTACTTGCTATTGTTGGTATAAAGGATCCTTGTCGACCAGGAGTTGCAGATGCAGTGAGACTATGCCAAAAGGCTGGCGTTAAGGTACGCATGGTTACTGGAGACAATGTTCAGACTGCAAAGGCAATAGCATTGGAATGTGGTATACTGCGTACTGATTCAGATCTTAGGGAGCATCTAATTGAAGGGAAAGACTTCCGTGAGCTTTCTGATAGGGAGAGAGAAGAGGTTGCTGAGAAAATCTCGGTAATGGGACGATCCTCTCCTAATGATAAGCTTCTGCTTGTGCAAGCGCTAAGGAGAAGGGGACATGTTGTTGCTGTTACTGGAGATGGCACTAATGATGCTCCTGCACTACATGAGGCCGACATTGGTCTTGCTATGGGTATTCAAGGTACTGAGGTTGCCAAAGAGAGTTCTGATATCATTATCCTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGACGTTCTGTATATGCAAATATTCAGAAATTCATACAATTCCAACTCACTGTCAATGTTGCTGCACTTGTTATCAATGTGGTGGCAGCGATTTCCTCTGGTGAAGTACCACTAAATGCTGTTCAGCTTCTGTGGGTGAATCTTATAATGGATACTCTTGGAGCATTAGCATTGGCTACTGAGCCTCCTACGAATCATCTGATGGACAGACCTCCTGTTGGTCGAAGGGAACCACTGATAACTAATATAATGTGGAGGAACTTATTGATTCAGGCTATCTACCAAATTACGGTCCTCCTTATCTTCAATTTCCGAGGGAAAAGTATTCTCAAGCTGGAACATGATTCTACTGACCATGCGGACAAAGTGAAGAACACACTTATATTCAATACCTTTGTCCTCTGTCAAATTTTCAATGAATTCAATGCCAGGAAGCCTGATGAATTCAACATATTCAAAGGAATTACCAAAAATTATCTCTTTATGGGAATAATTGCAGTGACACTTGTACTACAGATTCTCATTGTCGAGTTTCTGGGGAAGTTTACTACAACAGTCCGGCTTAACTGGAAGCATTGGTTGATTTCTGTTGTTATCGCTTTTATCAGTTGGCCTCTTGCTGTTGTTGGGAAGCTTATTCCGGTACCCGAAACTCCTTTCCACAGATATTTCACTAGGAGTCCTCTCTTTAAGTTTATAACCCGAATATTCCGTCGGCGAAGAGAGAGAACAGAGGCCTGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1055

Amino Acids

116.29

Weight (kDa)

8.76

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	32 - 72	5.6e-17	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	136 - 204	4.3e-14	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	258 - 348	2.4e-18	P-type ATPase actuator domain
Cation_ATPase	PF13246	491 - 662	1.9e-31	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	649 - 772	4e-14	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	843 - 1019	4.7e-45	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29900 AT4G29900 AT5G57110 AT5G57110 AT5G57110
fragaria_vesca	FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940
malus_domestica	MD13G1241000.v1.1 MD16G1245600.v1.1 MD16G1246100.v1.1
prunus_persica	Prupe.1G072600_v2.0.a1 Prupe.8G012900_v2.0.a1
pyrus_communis	pycom13g21220
rosa_chinensis	RchiOBHm_Chr4g0398891 RchiOBHm_Chr4g0398951
rosa_laevigata	RLG00000009307 RLG00000009309 RLG00000009365
rosa_multiflora	Rmu_sc0004094.1_g000033 Rmu_ssc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343340 Rroxscaffold_5G00343930 Rroxscaffold_5G00344000
rosa_rugosa	Rorug04G0013200
rosa_samantha	Rh4AG091100 Rh4CG093100 Rh4CG099100 Rh4CG099400
rosa_wichuraiana	Rw4G007100 Rw4G007130 Rw4G007500 Rw4G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2567, 3119
AasI	GACNNNNNNGTC	1 cut(s)	928
Acc65I	GGTACC	2 cut(s)	1367, 3064
AccB1I	GGYRCC	2 cut(s)	1367, 3064
AccI	GTMKAC	4 cut(s)	188, 793, 1981, 2092
AciI	CCGC	4 cut(s)	136, 152, 1671, 2780
AclWI	GGATC	7 cut(s)	387, 501, 514, 1558, 1967, 1980, 2199
AcoI	YGGCCR	2 cut(s)	1105, 1338
AcsI	RAATTY	8 cut(s)	338, 459, 1157, 1600, 2450, 2829, 2840, 2864
AcuI	CTGAAG	2 cut(s)	1251, 2382
AfaI	GTAC	9 cut(s)	1268, 1305, 1369, 2034, 2101, 2344, 2529, 2931, 3066
AfeI	AGCGCT	2 cut(s)	618, 2241
AfiI	CCNNNNNNNGG	6 cut(s)	872, 1243, 1526, 1937, 2639, 2710
AflIII	ACRYGT	2 cut(s)	796, 2257
AjiI	CACGTC	1 cut(s)	797
AjnI	CCWGG	5 cut(s)	463, 1613, 1984, 2379, 2849
AjuI	GAANNNNNNNTTGG	4 cut(s)	310, 330, 342, 362
AloI	GAACNNNNNNTCC	2 cut(s)	2040, 2072
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	5 cut(s)	137, 1517, 1623, 1999, 2043
AlwI	GGATC	7 cut(s)	387, 501, 514, 1558, 1967, 1980, 2199
AlwNI	CAGNNNCTG	1 cut(s)	2551
Ama87I	CYCGRG	1 cut(s)	85
Aor51HI	AGCGCT	2 cut(s)	618, 2241
ApeKI	GCWGC	9 cut(s)	266, 400, 599, 666, 978, 1724, 1781, 2483, 2507
ApoI	RAATTY	8 cut(s)	338, 459, 1157, 1600, 2450, 2829, 2840, 2864
ArsI	GACNNNNNNTTYG	4 cut(s)	1451, 1483, 3118, 3150
Asp700I	GAANNNNTTC	3 cut(s)	963, 1890, 2141
Asp718I	GGTACC	2 cut(s)	1367, 3064
AspLEI	GCGC	3 cut(s)	619, 1017, 2242
AspS9I	GGNCC	1 cut(s)	2713
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	9 cut(s)	347, 842, 866, 1198, 1544, 1545, 1913, 2534, 2569
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	2713
BaeGI	GKGCMC	1 cut(s)	1585
BaeI	ACNNNNGTAYC	2 cut(s)	2334, 2367
BalI	TGGCCA	1 cut(s)	1107
BamHI	GGATCC	2 cut(s)	506, 1972
BanI	GGYRCC	2 cut(s)	1367, 3064
BanII	GRGCYC	3 cut(s)	20, 1056, 1337
BarI	GAAGNNNNNNTAC	2 cut(s)	1692, 1724
BbsI	GAAGAC	2 cut(s)	230, 1617
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	9 cut(s)	253, 412, 586, 678, 965, 1711, 1793, 2470, 2519
BceAI	ACGGC	2 cut(s)	123, 1780
BcgI	CGANNNNNNTGC	2 cut(s)	1388, 1422
BciT130I	CCWGG	5 cut(s)	465, 1615, 1986, 2381, 2851
BciVI	GTATCC	1 cut(s)	2566
BclI	TGATCA	2 cut(s)	856, 1771
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	5 cut(s)	137, 1517, 1623, 1999, 2043
BfaI	CTAG	3 cut(s)	362, 689, 3096
BfmI	CTRYAG	6 cut(s)	398, 731, 1574, 1860, 1932, 2933
BfoI	RGCGCY	2 cut(s)	620, 2243
BfuI	GTATCC	1 cut(s)	2566
BglII	AGATCT	2 cut(s)	571, 2110
Bme1390I	CCNGG	6 cut(s)	465, 523, 1615, 1986, 2381, 2851
Bme18I	GGWCC	1 cut(s)	2713
BmeT110I	CYCGRG	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	797
BmgT120I	GGNCC	1 cut(s)	2713
BmiI	GGNNCC	8 cut(s)	55, 508, 864, 1180, 1369, 1974, 2652, 3066
BmrFI	CCNGG	6 cut(s)	465, 523, 1615, 1986, 2381, 2851
BmsI	GCATC	3 cut(s)	1987, 2131, 2281
BoxI	GACNNNNGTC	2 cut(s)	1394, 2319
BpiI	GAAGAC	2 cut(s)	230, 1617
BplI	GAGNNNNNCTC	4 cut(s)	68, 100, 2174, 2206
BpmI	CTGGAG	3 cut(s)	565, 2067, 2295
Bpu10I	CCTNAGC	1 cut(s)	2243
BpuEI	CTTGAG	2 cut(s)	1571, 2735
BpuMI	CCSGG	1 cut(s)	523
BsaAI	YACGTR	1 cut(s)	1307
BsaBI	GATNNNNATC	1 cut(s)	2109
BsaI	GGTCTC	1 cut(s)	1623
BsaJI	CCNNGG	6 cut(s)	424, 521, 533, 1242, 1299, 2734
BsaWI	WCCGGW	2 cut(s)	183, 3061
BsaXI	ACNNNNNCTCC	6 cut(s)	638, 668, 2040, 2070, 2590, 2620
Bsc4I	CCNNNNNNNGG	6 cut(s)	872, 1243, 1526, 1937, 2639, 2710
Bse3DI	GCAATG	5 cut(s)	669, 1513, 1774, 1791, 1932
Bse8I	GATNNNNATC	1 cut(s)	2109
BseBI	CCWGG	5 cut(s)	465, 1615, 1986, 2381, 2851
BseDI	CCNNGG	6 cut(s)	424, 521, 533, 1242, 1299, 2734
BseGI	GGATG	3 cut(s)	656, 1602, 2389
BseJI	GATNNNNATC	1 cut(s)	2109
BseLI	CCNNNNNNNGG	6 cut(s)	872, 1243, 1526, 1937, 2639, 2710
BseMI	GCAATG	5 cut(s)	669, 1513, 1774, 1791, 1932
BseMII	CTCAG	8 cut(s)	1148, 1505, 1512, 1634, 1647, 2172, 2337, 2592
BseRI	GAGGAG	2 cut(s)	1058, 1122
BseSI	GKGCMC	1 cut(s)	1585
BseXI	GCAGC	9 cut(s)	253, 412, 586, 678, 965, 1711, 1793, 2470, 2519
BseYI	CCCAGC	1 cut(s)	619
BsgI	GTGCAG	2 cut(s)	2283, 2469
BshNI	GGYRCC	2 cut(s)	1367, 3064
BsiHKAI	GWGCWC	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	8 cut(s)	51, 66, 184, 523, 975, 1146, 2980, 3062
BslFI	GGGAC	3 cut(s)	2214, 2268, 2436
BslI	CCNNNNNNNGG	6 cut(s)	872, 1243, 1526, 1937, 2639, 2710
BsmAI	GTCTC	5 cut(s)	137, 1517, 1623, 1999, 2043
BsmBI	CGTCTC	1 cut(s)	137
BsmFI	GGGAC	3 cut(s)	2214, 2268, 2436
BsmI	GAATGC	1 cut(s)	121
Bso31I	GGTCTC	1 cut(s)	1623
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	5 cut(s)	20, 247, 1056, 1337, 1585
BspACI	CCGC	4 cut(s)	136, 152, 1671, 2780
BspCNI	CTCAG	8 cut(s)	1147, 1504, 1513, 1633, 1648, 2173, 2338, 2593
BspLI	GGNNCC	8 cut(s)	55, 508, 864, 1180, 1369, 1974, 2652, 3066
BspMAI	CTGCAG	4 cut(s)	402, 735, 1578, 1936
BspPI	GGATC	7 cut(s)	387, 501, 514, 1558, 1967, 1980, 2199
BspT107I	GGYRCC	2 cut(s)	1367, 3064
BspTNI	GGTCTC	1 cut(s)	1623
BsrDI	GCAATG	5 cut(s)	669, 1513, 1774, 1791, 1932
BssECI	CCNNGG	6 cut(s)	424, 521, 533, 1242, 1299, 2734
BssNAI	GTATAC	2 cut(s)	189, 2093
BssT1I	CCWWGG	3 cut(s)	533, 1242, 1299
Bst1107I	GTATAC	2 cut(s)	189, 2093
Bst2UI	CCWGG	5 cut(s)	465, 1615, 1986, 2381, 2851
Bst4CI	ACNGT	6 cut(s)	62, 1060, 1393, 2473, 2713, 2977
Bst6I	CTCTTC	2 cut(s)	2166, 3136
BstAPI	GCANNNNNTGC	1 cut(s)	1931
BstBAI	YACGTR	1 cut(s)	1307
BstC8I	GCNNGC	7 cut(s)	20, 150, 565, 1442, 1932, 2023, 2238
BstF5I	GGATG	3 cut(s)	656, 1602, 2389
BstH2I	RGCGCY	2 cut(s)	620, 2243
BstHHI	GCGC	3 cut(s)	619, 1017, 2242
BstMAI	GTCTC	5 cut(s)	137, 1517, 1623, 1999, 2043
BstMWI	GCNNNNNNNGC	6 cut(s)	605, 614, 924, 1295, 1922, 1931
BstNI	CCWGG	5 cut(s)	465, 1615, 1986, 2381, 2851
BstNSI	RCATGY	4 cut(s)	251, 1323, 1413, 2261
BstPAI	GACNNNNGTC	2 cut(s)	1394, 2319
BstSCI	CCNGG	6 cut(s)	463, 521, 1613, 1984, 2379, 2849
BstSFI	CTRYAG	6 cut(s)	398, 731, 1574, 1860, 1932, 2933
BstSLI	GKGCMC	1 cut(s)	1585
BstSNI	TACGTA	1 cut(s)	1307
BstV1I	GCAGC	9 cut(s)	253, 412, 586, 678, 965, 1711, 1793, 2470, 2519
BstV2I	GAAGAC	2 cut(s)	230, 1617
BstX2I	RGATCY	4 cut(s)	506, 571, 1972, 2110
BstXI	CCANNNNNNTGG	2 cut(s)	1216, 2021
BstYI	RGATCY	4 cut(s)	506, 571, 1972, 2110
BstZ17I	GTATAC	2 cut(s)	189, 2093
BsuI	GTATCC	1 cut(s)	2566
BtrI	CACGTC	1 cut(s)	797
BtsCI	GGATG	3 cut(s)	656, 1602, 2389
BtsI	GCAGTG	4 cut(s)	1360, 1583, 2007, 2925
BtsIMutI	CAGTG	8 cut(s)	885, 1360, 1583, 1711, 2007, 2469, 2654, 2925
Cac8I	GCNNGC	7 cut(s)	20, 150, 565, 1442, 1932, 2023, 2238
CaiI	CAGNNNCTG	1 cut(s)	2551
CfoI	GCGC	3 cut(s)	619, 1017, 2242
Cfr13I	GGNCC	1 cut(s)	2713
CseI	GACGC	1 cut(s)	119
CsiI	ACCWGGT	1 cut(s)	1613
Csp6I	GTAC	9 cut(s)	1267, 1304, 1368, 2033, 2100, 2343, 2528, 2930, 3065
CviQI	GTAC	9 cut(s)	1267, 1304, 1368, 2033, 2100, 2343, 2528, 2930, 3065
DrdI	GACNNNNNNGTC	1 cut(s)	928
DseDI	GACNNNNNNGTC	1 cut(s)	928
EaeI	YGGCCR	2 cut(s)	1105, 1338
Eam1104I	CTCTTC	2 cut(s)	2166, 3136
EarI	CTCTTC	2 cut(s)	2166, 3136
EciI	GGCGGA	1 cut(s)	125
Eco105I	TACGTA	1 cut(s)	1307
Eco130I	CCWWGG	3 cut(s)	533, 1242, 1299
Eco147I	AGGCCT	4 cut(s)	423, 1236, 1298, 3158
Eco24I	GRGCYC	3 cut(s)	20, 1056, 1337
Eco31I	GGTCTC	1 cut(s)	1623
Eco32I	GATATC	1 cut(s)	2371
Eco47I	GGWCC	1 cut(s)	2713
Eco47III	AGCGCT	2 cut(s)	618, 2241
Eco57I	CTGAAG	2 cut(s)	1251, 2382
Eco88I	CYCGRG	1 cut(s)	85
EcoRI	GAATTC	3 cut(s)	459, 2840, 2864
EcoRII	CCWGG	5 cut(s)	463, 1613, 1984, 2379, 2849
EcoRV	GATATC	1 cut(s)	2371
EcoT14I	CCWWGG	3 cut(s)	533, 1242, 1299
EcoT38I	GRGCYC	3 cut(s)	20, 1056, 1337
ErhI	CCWWGG	3 cut(s)	533, 1242, 1299
Esp3I	CGTCTC	1 cut(s)	137
FalI	AAGNNNNNCTT	4 cut(s)	141, 173, 1433, 1465
FaqI	GGGAC	3 cut(s)	2214, 2268, 2436
FauNDI	CATATG	2 cut(s)	502, 1876
FbaI	TGATCA	2 cut(s)	856, 1771
FblI	GTMKAC	4 cut(s)	188, 793, 1981, 2092
FokI	GGATG	3 cut(s)	663, 1609, 2396
FriOI	GRGCYC	3 cut(s)	20, 1056, 1337
FspBI	CTAG	3 cut(s)	362, 689, 3096
GlaI	GCGC	3 cut(s)	618, 1016, 2241
GsaI	CCCAGC	1 cut(s)	623
GsuI	CTGGAG	3 cut(s)	565, 2067, 2295
HaeII	RGCGCY	2 cut(s)	620, 2243
HapII	CCGG	8 cut(s)	51, 66, 184, 523, 975, 1146, 2980, 3062
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	3 cut(s)	619, 1017, 2242
Hin6I	GCGC	3 cut(s)	617, 1015, 2240
HinP1I	GCGC	3 cut(s)	617, 1015, 2240
HincII	GTYRAC	2 cut(s)	794, 1982
HindII	GTYRAC	2 cut(s)	794, 1982
HindIII	AAGCTT	4 cut(s)	561, 1589, 2222, 3053
HpaII	CCGG	8 cut(s)	51, 66, 184, 523, 975, 1146, 2980, 3062
HphI	GGTGA	9 cut(s)	347, 842, 866, 1198, 1544, 1545, 1913, 2534, 2569
Hpy166II	GTNNAC	6 cut(s)	189, 794, 1904, 1982, 2093, 2967
Hpy188III	TCNNGA	5 cut(s)	280, 544, 739, 1229, 1813
Hpy8I	GTNNAC	6 cut(s)	189, 794, 1904, 1982, 2093, 2967
Hpy99I	CGWCG	7 cut(s)	74, 77, 128, 180, 798, 1796, 3138
HpyAV	CCTTC	8 cut(s)	1045, 1226, 1475, 1558, 2126, 2244, 2401, 2640
HpyCH4III	ACNGT	6 cut(s)	62, 1060, 1393, 2473, 2713, 2977
HpyCH4IV	ACGT	5 cut(s)	227, 796, 1306, 1536, 2425
HpyF10VI	GCNNNNNNNGC	6 cut(s)	605, 614, 924, 1295, 1922, 1931
HpySE526I	ACGT	5 cut(s)	227, 796, 1306, 1536, 2425
HspAI	GCGC	3 cut(s)	617, 1015, 2240
KpnI	GGTACC	2 cut(s)	1371, 3068
Ksp22I	TGATCA	2 cut(s)	856, 1771
LmnI	GCTCC	4 cut(s)	1178, 2119, 2299, 2582
Lsp1109I	GCAGC	9 cut(s)	253, 412, 586, 678, 965, 1711, 1793, 2470, 2519
LweI	GCATC	3 cut(s)	1987, 2131, 2281
MabI	ACCWGGT	1 cut(s)	1613
MaeI	CTAG	3 cut(s)	362, 689, 3096
MaeII	ACGT	5 cut(s)	227, 796, 1306, 1536, 2425
MfeI	CAATTG	2 cut(s)	345, 903
MflI	RGATCY	4 cut(s)	506, 571, 1972, 2110
MhlI	GDGCHC	5 cut(s)	20, 247, 1056, 1337, 1585
MlsI	TGGCCA	1 cut(s)	1107
MluNI	TGGCCA	1 cut(s)	1107
MlyI	GAGTC	6 cut(s)	13, 920, 938, 944, 1409, 3109
MmeI	TCCRAC	4 cut(s)	122, 534, 1919, 2488
Mox20I	TGGCCA	1 cut(s)	1107
MroXI	GAANNNNTTC	3 cut(s)	963, 1890, 2141
MscI	TGGCCA	1 cut(s)	1107
MseI	TTAA	9 cut(s)	230, 846, 881, 1256, 1373, 1683, 2028, 2985, 3111
MslI	CAYNNNNRTG	4 cut(s)	590, 698, 1214, 2083
Msp20I	TGGCCA	1 cut(s)	1107
MspI	CCGG	8 cut(s)	51, 66, 184, 523, 975, 1146, 2980, 3062
MspR9I	CCNGG	6 cut(s)	465, 523, 1615, 1986, 2381, 2851
MunI	CAATTG	2 cut(s)	345, 903
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	5 cut(s)	465, 1615, 1986, 2381, 2851
MwoI	GCNNNNNNNGC	6 cut(s)	605, 614, 924, 1295, 1922, 1931
NciI	CCSGG	1 cut(s)	523
NdeI	CATATG	2 cut(s)	502, 1876
NlaIV	GGNNCC	8 cut(s)	55, 508, 864, 1180, 1369, 1974, 2652, 3066
NmeAIII	GCCGAG	1 cut(s)	1316
NmuCI	GTSAC	6 cut(s)	700, 713, 1192, 1204, 1532, 2920
NspI	RCATGY	4 cut(s)	251, 1323, 1413, 2261
PaeR7I	CTCGAG	1 cut(s)	85
PceI	AGGCCT	4 cut(s)	423, 1236, 1298, 3158
PciI	ACATGT	1 cut(s)	2257
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 1846
PctI	GAATGC	1 cut(s)	121
PdmI	GAANNNNTTC	3 cut(s)	963, 1890, 2141
PfeI	GAWTC	8 cut(s)	180, 742, 2105, 2560, 2614, 2689, 2765, 2938
PfoI	TCCNGGA	2 cut(s)	463, 2379
PleI	GAGTC	6 cut(s)	12, 919, 937, 944, 1408, 3108
PpsI	GAGTC	6 cut(s)	12, 919, 937, 944, 1408, 3108
Ppu21I	YACGTR	1 cut(s)	1307
PscI	ACATGT	1 cut(s)	2257
PshAI	GACNNNNGTC	2 cut(s)	1394, 2319
PsiI	TTATAA	2 cut(s)	2567, 3119
Psp6I	CCWGG	5 cut(s)	463, 1613, 1984, 2379, 2849
PspFI	CCCAGC	1 cut(s)	619
PspGI	CCWGG	5 cut(s)	463, 1613, 1984, 2379, 2849
PspN4I	GGNNCC	8 cut(s)	55, 508, 864, 1180, 1369, 1974, 2652, 3066
PspPI	GGNCC	1 cut(s)	2713
PspXI	VCTCGAGB	1 cut(s)	85
PstI	CTGCAG	4 cut(s)	402, 735, 1578, 1936
PstNI	CAGNNNCTG	1 cut(s)	2551
PsuI	RGATCY	4 cut(s)	506, 571, 1972, 2110
RsaI	GTAC	9 cut(s)	1268, 1305, 1369, 2034, 2101, 2344, 2529, 2931, 3066
RsaNI	GTAC	9 cut(s)	1267, 1304, 1368, 2033, 2100, 2343, 2528, 2930, 3065
RseI	CAYNNNNRTG	4 cut(s)	590, 698, 1214, 2083
SalI	GTCGAC	2 cut(s)	792, 1980
SaqAI	TTAA	9 cut(s)	230, 846, 881, 1256, 1373, 1683, 2028, 2985, 3111
Sau96I	GGNCC	1 cut(s)	2713
SchI	GAGTC	6 cut(s)	13, 920, 938, 944, 1409, 3109
ScrFI	CCNGG	6 cut(s)	465, 523, 1615, 1986, 2381, 2851
SduI	GDGCHC	5 cut(s)	20, 247, 1056, 1337, 1585
SexAI	ACCWGGT	1 cut(s)	1613
SfaNI	GCATC	3 cut(s)	1987, 2131, 2281
SfcI	CTRYAG	6 cut(s)	398, 731, 1574, 1860, 1932, 2933
Sfr274I	CTCGAG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	2713
SlaI	CTCGAG	1 cut(s)	85
SmiMI	CAYNNNNRTG	4 cut(s)	590, 698, 1214, 2083
SmlI	CTYRAG	3 cut(s)	85, 1586, 2750
SmoI	CTYRAG	3 cut(s)	85, 1586, 2750
SnaBI	TACGTA	1 cut(s)	1307
SseBI	AGGCCT	4 cut(s)	423, 1236, 1298, 3158
SsiI	CCGC	4 cut(s)	136, 152, 1671, 2780
SspI	AATATT	2 cut(s)	2443, 3129
SspMI	CTAG	3 cut(s)	362, 689, 3096
StuI	AGGCCT	4 cut(s)	423, 1236, 1298, 3158
StyD4I	CCNGG	6 cut(s)	463, 521, 1613, 1984, 2379, 2849
StyI	CCWWGG	3 cut(s)	533, 1242, 1299
TaaI	ACNGT	6 cut(s)	62, 1060, 1393, 2473, 2713, 2977
TaiI	ACGT	5 cut(s)	230, 799, 1309, 1539, 2428
TaqI	TCGA	8 cut(s)	86, 126, 178, 793, 1398, 1981, 2644, 2949
TatI	WGTACW	1 cut(s)	2929
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	8 cut(s)	180, 742, 2105, 2560, 2614, 2689, 2765, 2938
Tru1I	TTAA	9 cut(s)	230, 846, 881, 1256, 1373, 1683, 2028, 2985, 3111
Tru9I	TTAA	9 cut(s)	230, 846, 881, 1256, 1373, 1683, 2028, 2985, 3111
TscAI	CASTG	8 cut(s)	892, 1360, 1583, 1718, 2007, 2476, 2661, 2925
TseFI	GTSAC	6 cut(s)	700, 713, 1192, 1204, 1532, 2920
TseI	GCWGC	9 cut(s)	266, 400, 599, 666, 978, 1724, 1781, 2483, 2507
Tsp45I	GTSAC	6 cut(s)	700, 713, 1192, 1204, 1532, 2920
TspDTI	ATGAA	9 cut(s)	1027, 1613, 1625, 1694, 1713, 1893, 2443, 2853, 2877
TspGWI	ACGGA	3 cut(s)	112, 2135, 3122
TspRI	CASTG	8 cut(s)	892, 1360, 1583, 1718, 2007, 2476, 2661, 2925
VpaK11BI	GGWCC	1 cut(s)	2713
XapI	RAATTY	8 cut(s)	338, 459, 1157, 1600, 2450, 2829, 2840, 2864
XceI	RCATGY	4 cut(s)	251, 1323, 1413, 2261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	540
XhoI	CTCGAG	1 cut(s)	85
XmiI	GTMKAC	4 cut(s)	188, 793, 1981, 2092
XmnI	GAANNNNTTC	3 cut(s)	963, 1890, 2141
XspI	CTAG	3 cut(s)	362, 689, 3096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.