Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003103

Physical Location & Seq

Genomic Coordinates Reverse (-)

13880174 .. 13901433

Gene Structure 21260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3240 bp

ATGAGTCATTCAACGGGCTCGCTGAACGATGTGGAAGCCGGAAGCAACCGTTCCGGCGACGACGAGGAGTCGTCGAATGTTTTTGATATTACCAGAACTAAGCATGCTTCCGTCGAGCGTCTCCGCCGTTGGAGGCAAGCGGCACTTGTGCTAAATGCTTCTCGTCGATTCCGGTATACTTTAGACTTGAAAAAGGCGGAAGATAAAAAGCAGACGTTAAGGAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATTTCTTTTCAAGGAATCCGTAACACAGGAAAATGGAATTGTGCAACCAAAACCAAGTTCTACTGGTGAATTTCCAATTGGACAAGAAGAACTAGCTTCAATTTCAAGGGATCATAATTTTACTACTCTGCAGCAATATGGGGGGGTCAAAGGCCTTGGAGAATTATTGAAAACAAGTTTAGAAAAGGGAATTCCCGGAAGTGATGATGATTTACTAAAACGAAAAACTGCATATGGATCCAACACATATCCCCGGAAAAAACCAAGGAGTTTCTGGAGATTTCTCTGGGAAGCTTGCCAAGATCTTACTCTTATCATTTTGATGGTAGCTGCTGTGGCTTCTTTAGCGCTGGGTATAAAAACAGAGGGTATAAAGGAGGGATGGTATGATGGGGGCAGCATTGCTTTTGCAGTTCTCCTAGTCATTGTTGTGACAGCCATTAGTGACTACAAACAATCTCTGCAGTTCCAGAATCTAAATGAGGAAAAGAGAAATATACAAATTGAGGTTATCAGAGGTGGTAGACGTGTTGAGGTTTCAATTTATGATCTTGTTGTTGGTGATGTTATACCCCTTAACATTGGTGATCAGGTTCCTGCTGATGGGGTTTTAATCACTGGTCATTCACTTTCAATTGATGAGTCTAGCATGACTGGCGAGTCCAAGATTGTTCGCAAGGACTCCAAAGAACCATTTCTAATGTCTGGCTGCAAAGTAGCCGATGGAAATGGTTTAATGCTGGTAACCAGCGTTGGGATTAATACTGAATGGGGATTACTCATGGCTAGCATCTCGGAAGACACTGGTGAAGAAACACCCTTGCAGGTGCGCTTGAATGGGGTTGCTACCTTCATTGGTGTTGTAGGACTCACAGTAGCTCTCCTCGTCTTATGTGTCCTTTTGGTCAGATACTTTACTGGCCATACAACAAATGCAGATGGAACTACTCAGTTTGTTGCCGGAAAGACAAAATTTGGGAAAGCCATAGATGGAGCCATCAAAATTGTCACTATTGCAGTCACCATTGTAGTGGTTGCCGTTCCTGAAGGCCTCCCTTTAGCTGTTACCTTAACACTTGCTTACTCAATGAGAAAAATGATGGCAGATAAGGCCTTGGTACGTAGGCTTTCTGCATGTGAAACAATGGGCTCGGCCACTACTATATGCAGTGATAAGACTGGTACCTTAACATTGAACCAGATGACTGTGGTCGAGTCTTGTGCATGTTTGAAGAAAGTCAATGACTCTGATGGCAAGCCAGACTTGTTGCCAAAGATATCGTCTTTAATTATTGAAGGCATAGCTCAGAATACAACTGGCAATGTTTATGTGCCTGAGACTGGTGGTGATGTAGAGGTTACTGGATCACCAACGGAGAAGGCAATTCTGCAGTGGGCACTCAAGCTTGGGATGAATTTTGAAGCCACCAGGTCTCAATCTTCAATTCTTCATGTGTTCCCATTCAACTCCGAGAAAAAACGAGGCGGTGTAGCAGTTAAATTGCCAAACAATGAAGTTCATATACACTGGAAAGGGGCTGCTGAAATAATCTTGGCCTCATGCACAAGATACATTGACGACAATGATCAGGTGGCAGCAATGGACGACGACAAGCTTATGCTTTTCAGGAAATCTATTGAGGATATGGCTGTTGGTAGTTTGCGTTGTGTTGCTATAGCATATTTACCATATGAATTGGAAAATGTTCCAACTGGTGAACAACAATTAGCTGATTGGGCCATGCCTGCAGATGACCTTGTTTTACTTGCTATTGTTGGTATAAAGGATCCTTGTCGACCAGGAGTCGCAGATGCAGTGAGACTATGCCAAAATGCTGGAGTTAAGGTACGCATGGTTACTGGAGACAATGTTCAGACTGCCAAGGCAATAGCATTGGAATGTGGTATACTGCGGGCTGATTCAGATCTTAGTGAGCTTCTAATTGAAGGGAAAGACTTCCGTGAGCTTTCTGATAGGGGCAGAGAAGAGGTTGCTGAGAAAATCTCGGTAATGGGACGATCCTCTCCTAATGATAAGCTTCTGCTTGTGCAAGCGCTAAGGAGAAGGGGACATGTTGTTGCTGTTACTGGAGATGGCACTAATGATGCTCCTGCACTACATGAGGCCGACATTGGTCTTGCTATGGGTATTCAAGGTACTGAGGTTGCCAAAGAGAGTTCTGATATCATTATCTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGACGTTCTGTATATGCAAATATTCAGAAATTCATCCAATTCCAACTCACTGTCAATGTTGCCGCACTTGTTATCAATGTTGTGGCAGCGATTTCCTCTGGTGCAGTACCACTAAATGCTGTTCAGCTTCTGTGGGTGAATCTTATAATGGATACTCTTGGAGCACTAGCATTGGCTACTGAGCCTCCTACGAATCATCTGATGGACAGACTTCCTGTTGGTCGAAGGGAACCGCTGATAACTAATATAATGTGGAGGAACTTATTGATTCAGGCTATCTACCAAATTACTGTCCTCCTTATCCTTAATTTCCGAGGGAAAAGTATTCTCAATCTGGAACACGATTCTACTGACCATGCAGACAAAGTGAAGAACACACTGATATTCAATACATTTGTCCTTTGTCAAATTTTCAATGAATTCAATGCCAGGAAGCCAGATGAATTCAACATATTCAAAGGAATTACCAAAAATTATCTCTTTATGGGAATAATCGCAGTGACACTTGTACTTCAGATTCTCATTGTCGAGTTTCTGGGGAAGTTTACTACAACAGTCCGGCTTAACTGGAAGCATTGGTTGATTTCTGTTGTCATTGCTTTTATCAGTTGGCCTCTTGCTGTTGTTGGGAAGTTTATTCCAGTACCTGAAACTCCTTTCCACAAGTATTTCACTAGGAGTCCTCCCTTTAAGTTTATCGCCGGAATATTCCGTCGGCGAAGAGAGAGAGCAGAGGCTAGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1079

Amino Acids

118.35

Weight (kDa)

7.54

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	26 - 67	8e-17	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	132 - 200	4.4e-14	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	254 - 349	2.2e-20	P-type ATPase actuator domain
Hydrolase	PF00702	473 - 796	3.5e-14	haloacid dehalogenase-like hydrolase
Cation_ATPase	PF13246	515 - 686	1.4e-30	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	867 - 1043	2.6e-43	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29900 AT4G29900 AT5G57110 AT5G57110 AT5G57110
fragaria_vesca	FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940
malus_domestica	MD13G1241000.v1.1 MD16G1245600.v1.1 MD16G1246100.v1.1
prunus_persica	Prupe.1G072600_v2.0.a1 Prupe.8G012900_v2.0.a1
pyrus_communis	pycom13g21220
rosa_chinensis	RchiOBHm_Chr4g0398891 RchiOBHm_Chr4g0398951
rosa_laevigata	RLG00000009307 RLG00000009309 RLG00000009365
rosa_multiflora	Rmu_sc0004094.1_g000033 Rmu_ssc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343340 Rroxscaffold_5G00343930 Rroxscaffold_5G00344000
rosa_rugosa	Rorug04G0013200
rosa_samantha	Rh4AG091100 Rh4CG093100 Rh4CG099100 Rh4CG099400
rosa_wichuraiana	Rw4G007100 Rw4G007130 Rw4G007500 Rw4G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2639
AarI	CACCTGC	1 cut(s)	1072
AasI	GACNNNNNNGTC	1 cut(s)	916
Acc36I	ACCTGC	1 cut(s)	1072
Acc65I	GGTACC	1 cut(s)	1439
AccB1I	GGYRCC	1 cut(s)	1439
AccI	GTMKAC	4 cut(s)	176, 781, 2053, 2164
AciI	CCGC	7 cut(s)	124, 140, 197, 1743, 2170, 2556, 2726
AclWI	GGATC	7 cut(s)	375, 489, 502, 1630, 2039, 2052, 2271
AcoI	YGGCCR	2 cut(s)	1177, 1410
AcsI	RAATTY	8 cut(s)	326, 447, 1229, 1672, 2522, 2901, 2912, 2936
AcuI	CTGAAG	3 cut(s)	1323, 2454, 2990
AfaI	GTAC	7 cut(s)	1377, 1441, 2106, 2416, 2601, 3003, 3138
AfeI	AGCGCT	2 cut(s)	606, 2313
AfiI	CCNNNNNNNGG	3 cut(s)	860, 1011, 1598
AflIII	ACRYGT	2 cut(s)	784, 2329
AhdI	GACNNNNNGTC	2 cut(s)	67, 2060
AjiI	CACGTC	1 cut(s)	785
AjnI	CCWGG	3 cut(s)	1685, 2056, 2921
AjuI	GAANNNNNNNTTGG	4 cut(s)	298, 318, 330, 350
AloI	GAACNNNNNNTCC	2 cut(s)	2112, 2144
Alw21I	GWGCWC	2 cut(s)	235, 2659
Alw26I	GTCTC	5 cut(s)	125, 1589, 1695, 2071, 2115
AlwI	GGATC	7 cut(s)	375, 489, 502, 1630, 2039, 2052, 2271
AlwNI	CAGNNNCTG	2 cut(s)	2623, 3140
Aor51HI	AGCGCT	2 cut(s)	606, 2313
AoxI	GGCC	9 cut(s)	409, 1177, 1306, 1368, 1410, 1812, 1995, 2382, 3104
ApeKI	GCWGC	8 cut(s)	254, 388, 587, 654, 966, 1796, 1853, 2579
ApoI	RAATTY	8 cut(s)	326, 447, 1229, 1672, 2522, 2901, 2912, 2936
ArsI	GACNNNNNNTTYG	2 cut(s)	1523, 1555
AseI	ATTAAT	1 cut(s)	1017
Asp700I	GAANNNNTTC	3 cut(s)	951, 1962, 2213
Asp718I	GGTACC	1 cut(s)	1439
AspLEI	GCGC	3 cut(s)	607, 1089, 2314
AspS9I	GGNCC	1 cut(s)	1995
AsuC2I	CCSGG	2 cut(s)	453, 511
AsuHPI	GGTGA	9 cut(s)	335, 830, 854, 1076, 1270, 1616, 1617, 1985, 2641
AsuNHI	GCTAGC	1 cut(s)	1043
BaeGI	GKGCMC	1 cut(s)	1657
BaeI	ACNNNNGTAYC	2 cut(s)	2406, 2439
BalI	TGGCCA	1 cut(s)	1179
BamHI	GGATCC	2 cut(s)	494, 2044
BanI	GGYRCC	1 cut(s)	1439
BanII	GRGCYC	2 cut(s)	20, 1409
BarI	GAAGNNNNNNTAC	2 cut(s)	1764, 1796
BbsI	GAAGAC	1 cut(s)	1062
Bbv12I	GWGCWC	2 cut(s)	235, 2659
BbvI	GCAGC	8 cut(s)	241, 400, 574, 666, 953, 1783, 1865, 2591
BceAI	ACGGC	2 cut(s)	111, 1280
BcgI	CGANNNNNNTGC	2 cut(s)	1460, 1494
BciT130I	CCWGG	3 cut(s)	1687, 2058, 2923
BciVI	GTATCC	1 cut(s)	2638
BclI	TGATCA	2 cut(s)	844, 1843
BcnI	CCSGG	2 cut(s)	453, 511
BcoDI	GTCTC	5 cut(s)	125, 1589, 1695, 2071, 2115
BfaI	CTAG	7 cut(s)	350, 677, 903, 1044, 2660, 3168, 3231
BfmI	CTRYAG	5 cut(s)	386, 719, 1646, 1932, 2004
BfoI	RGCGCY	2 cut(s)	608, 2315
BfuAI	ACCTGC	1 cut(s)	1072
BfuI	GTATCC	1 cut(s)	2638
BglII	AGATCT	2 cut(s)	559, 2182
Bme1390I	CCNGG	5 cut(s)	453, 511, 1687, 2058, 2923
BmeRI	GACNNNNNGTC	2 cut(s)	67, 2060
BmgBI	CACGTC	1 cut(s)	785
BmgT120I	GGNCC	1 cut(s)	1995
BmiI	GGNNCC	6 cut(s)	496, 852, 1252, 1441, 2046, 2724
BmrFI	CCNGG	5 cut(s)	453, 511, 1687, 2058, 2923
BmsI	GCATC	3 cut(s)	1056, 2059, 2353
BmtI	GCTAGC	1 cut(s)	1047
BoxI	GACNNNNGTC	2 cut(s)	1466, 2391
BpiI	GAAGAC	1 cut(s)	1062
BplI	GAGNNNNNCTC	2 cut(s)	2246, 2278
BpmI	CTGGAG	4 cut(s)	553, 2115, 2139, 2367
Bpu10I	CCTNAGC	1 cut(s)	2315
BpuEI	CTTGAG	1 cut(s)	1643
BpuMI	CCSGG	2 cut(s)	453, 511
BsaAI	YACGTR	1 cut(s)	1379
BsaBI	GATNNNNATC	1 cut(s)	2181
BsaI	GGTCTC	1 cut(s)	1695
BsaJI	CCNNGG	6 cut(s)	412, 509, 521, 1371, 2139, 2806
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	8 cut(s)	626, 656, 2088, 2112, 2118, 2142, 2662, 2692
Bsc4I	CCNNNNNNNGG	3 cut(s)	860, 1011, 1598
Bse3DI	GCAATG	4 cut(s)	657, 1585, 1863, 3087
Bse8I	GATNNNNATC	1 cut(s)	2181
BseBI	CCWGG	3 cut(s)	1687, 2058, 2923
BseDI	CCNNGG	6 cut(s)	412, 509, 521, 1371, 2139, 2806
BseGI	GGATG	4 cut(s)	644, 1674, 2461, 2526
BseJI	GATNNNNATC	1 cut(s)	2181
BseLI	CCNNNNNNNGG	3 cut(s)	860, 1011, 1598
BseMI	GCAATG	4 cut(s)	657, 1585, 1863, 3087
BseMII	CTCAG	6 cut(s)	1220, 1577, 1584, 2244, 2409, 2664
BseRI	GAGGAG	2 cut(s)	80, 1130
BseSI	GKGCMC	1 cut(s)	1657
BseXI	GCAGC	8 cut(s)	241, 400, 574, 666, 953, 1783, 1865, 2591
BseYI	CCCAGC	1 cut(s)	607
BsgI	GTGCAG	2 cut(s)	2355, 2616
BshFI	GGCC	9 cut(s)	411, 1179, 1308, 1370, 1412, 1814, 1997, 2384, 3106
BshNI	GGYRCC	1 cut(s)	1439
BsiHKAI	GWGCWC	2 cut(s)	235, 2659
BsiSI	CCGG	8 cut(s)	39, 54, 172, 453, 511, 1218, 3052, 3195
BslFI	GGGAC	3 cut(s)	2286, 2340, 2508
BslI	CCNNNNNNNGG	3 cut(s)	860, 1011, 1598
BsmAI	GTCTC	5 cut(s)	125, 1589, 1695, 2071, 2115
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	3 cut(s)	2286, 2340, 2508
BsnI	GGCC	9 cut(s)	411, 1179, 1308, 1370, 1412, 1814, 1997, 2384, 3106
Bso31I	GGTCTC	1 cut(s)	1695
Bsp1286I	GDGCHC	5 cut(s)	20, 235, 1409, 1657, 2659
BspACI	CCGC	7 cut(s)	124, 140, 197, 1743, 2170, 2556, 2726
BspANI	GGCC	9 cut(s)	411, 1179, 1308, 1370, 1412, 1814, 1997, 2384, 3106
BspCNI	CTCAG	6 cut(s)	1219, 1576, 1585, 2245, 2410, 2665
BspLI	GGNNCC	6 cut(s)	496, 852, 1252, 1441, 2046, 2724
BspMAI	CTGCAG	4 cut(s)	390, 723, 1650, 2008
BspMI	ACCTGC	1 cut(s)	1072
BspOI	GCTAGC	1 cut(s)	1047
BspPI	GGATC	7 cut(s)	375, 489, 502, 1630, 2039, 2052, 2271
BspT107I	GGYRCC	1 cut(s)	1439
BspTNI	GGTCTC	1 cut(s)	1695
BsrDI	GCAATG	4 cut(s)	657, 1585, 1863, 3087
BssECI	CCNNGG	6 cut(s)	412, 509, 521, 1371, 2139, 2806
BssNAI	GTATAC	2 cut(s)	177, 2165
BssT1I	CCWWGG	4 cut(s)	412, 521, 1371, 2139
Bst1107I	GTATAC	2 cut(s)	177, 2165
Bst2UI	CCWGG	3 cut(s)	1687, 2058, 2923
Bst4CI	ACNGT	6 cut(s)	50, 1132, 1465, 2545, 2785, 3049
Bst6I	CTCTTC	2 cut(s)	2238, 3208
BstBAI	YACGTR	1 cut(s)	1379
BstC8I	GCNNGC	9 cut(s)	20, 105, 138, 553, 1045, 1514, 2004, 2172, 2310
BstDEI	CTNAG	9 cut(s)	99, 1206, 1563, 1593, 2186, 2253, 2315, 2418, 2673
BstEII	GGTNACC	1 cut(s)	1000
BstF5I	GGATG	4 cut(s)	644, 1674, 2461, 2526
BstH2I	RGCGCY	2 cut(s)	608, 2315
BstHHI	GCGC	3 cut(s)	607, 1089, 2314
BstMAI	GTCTC	5 cut(s)	125, 1589, 1695, 2071, 2115
BstMWI	GCNNNNNNNGC	7 cut(s)	251, 593, 602, 912, 1367, 1994, 2003
BstNI	CCWGG	3 cut(s)	1687, 2058, 2923
BstNSI	RCATGY	5 cut(s)	107, 239, 1395, 1485, 2333
BstPAI	GACNNNNGTC	2 cut(s)	1466, 2391
BstPI	GGTNACC	1 cut(s)	1000
BstSCI	CCNGG	5 cut(s)	451, 509, 1685, 2056, 2921
BstSFI	CTRYAG	5 cut(s)	386, 719, 1646, 1932, 2004
BstSLI	GKGCMC	1 cut(s)	1657
BstSNI	TACGTA	1 cut(s)	1379
BstV1I	GCAGC	8 cut(s)	241, 400, 574, 666, 953, 1783, 1865, 2591
BstV2I	GAAGAC	1 cut(s)	1062
BstX2I	RGATCY	4 cut(s)	494, 559, 2044, 2182
BstXI	CCANNNNNNTGG	2 cut(s)	1288, 2093
BstYI	RGATCY	4 cut(s)	494, 559, 2044, 2182
BstZ17I	GTATAC	2 cut(s)	177, 2165
BsuI	GTATCC	1 cut(s)	2638
BsuRI	GGCC	9 cut(s)	411, 1179, 1308, 1370, 1412, 1814, 1997, 2384, 3106
BtrI	CACGTC	1 cut(s)	785
BtsCI	GGATG	4 cut(s)	644, 1674, 2461, 2526
BtsI	GCAGTG	4 cut(s)	1432, 1655, 2079, 2997
BtsIMutI	CAGTG	9 cut(s)	873, 1059, 1432, 1655, 1783, 2079, 2541, 2870, 2997
BveI	ACCTGC	1 cut(s)	1072
Cac8I	GCNNGC	9 cut(s)	20, 105, 138, 553, 1045, 1514, 2004, 2172, 2310
CaiI	CAGNNNCTG	2 cut(s)	2623, 3140
CfoI	GCGC	3 cut(s)	607, 1089, 2314
Cfr13I	GGNCC	1 cut(s)	1995
CseI	GACGC	1 cut(s)	107
CsiI	ACCWGGT	1 cut(s)	1685
Csp6I	GTAC	7 cut(s)	1376, 1440, 2105, 2415, 2600, 3002, 3137
CviQI	GTAC	7 cut(s)	1376, 1440, 2105, 2415, 2600, 3002, 3137
DdeI	CTNAG	9 cut(s)	99, 1206, 1563, 1593, 2186, 2253, 2315, 2418, 2673
DrdI	GACNNNNNNGTC	1 cut(s)	916
DriI	GACNNNNNGTC	2 cut(s)	67, 2060
DseDI	GACNNNNNNGTC	1 cut(s)	916
EaeI	YGGCCR	2 cut(s)	1177, 1410
Eam1104I	CTCTTC	2 cut(s)	2238, 3208
Eam1105I	GACNNNNNGTC	2 cut(s)	67, 2060
EarI	CTCTTC	2 cut(s)	2238, 3208
EciI	GGCGGA	2 cut(s)	113, 212
Eco105I	TACGTA	1 cut(s)	1379
Eco130I	CCWWGG	4 cut(s)	412, 521, 1371, 2139
Eco147I	AGGCCT	3 cut(s)	411, 1308, 1370
Eco24I	GRGCYC	2 cut(s)	20, 1409
Eco31I	GGTCTC	1 cut(s)	1695
Eco32I	GATATC	2 cut(s)	1536, 2443
Eco47III	AGCGCT	2 cut(s)	606, 2313
Eco57I	CTGAAG	3 cut(s)	1323, 2454, 2990
Eco91I	GGTNACC	1 cut(s)	1000
EcoO65I	GGTNACC	1 cut(s)	1000
EcoRI	GAATTC	3 cut(s)	447, 2912, 2936
EcoRII	CCWGG	3 cut(s)	1685, 2056, 2921
EcoRV	GATATC	2 cut(s)	1536, 2443
EcoT14I	CCWWGG	4 cut(s)	412, 521, 1371, 2139
EcoT38I	GRGCYC	2 cut(s)	20, 1409
ErhI	CCWWGG	4 cut(s)	412, 521, 1371, 2139
Esp3I	CGTCTC	1 cut(s)	125
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 1505, 1537
FaqI	GGGAC	3 cut(s)	2286, 2340, 2508
FauI	CCCGC	1 cut(s)	2163
FauNDI	CATATG	2 cut(s)	490, 1948
FbaI	TGATCA	2 cut(s)	844, 1843
FblI	GTMKAC	4 cut(s)	176, 781, 2053, 2164
FokI	GGATG	4 cut(s)	651, 1681, 2468, 2513
FriOI	GRGCYC	2 cut(s)	20, 1409
FspBI	CTAG	7 cut(s)	350, 677, 903, 1044, 2660, 3168, 3231
GlaI	GCGC	3 cut(s)	606, 1088, 2313
GsaI	CCCAGC	1 cut(s)	611
GsuI	CTGGAG	4 cut(s)	553, 2115, 2139, 2367
HaeII	RGCGCY	2 cut(s)	608, 2315
HaeIII	GGCC	9 cut(s)	411, 1179, 1308, 1370, 1412, 1814, 1997, 2384, 3106
HapII	CCGG	8 cut(s)	39, 54, 172, 453, 511, 1218, 3052, 3195
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	3 cut(s)	607, 1089, 2314
Hin6I	GCGC	3 cut(s)	605, 1087, 2312
HinP1I	GCGC	3 cut(s)	605, 1087, 2312
HincII	GTYRAC	1 cut(s)	2054
HindII	GTYRAC	1 cut(s)	2054
HindIII	AAGCTT	4 cut(s)	549, 1661, 1871, 2294
HpaII	CCGG	8 cut(s)	39, 54, 172, 453, 511, 1218, 3052, 3195
HphI	GGTGA	9 cut(s)	335, 830, 854, 1076, 1270, 1616, 1617, 1985, 2641
Hpy166II	GTNNAC	6 cut(s)	177, 782, 1976, 2054, 2165, 3039
Hpy188III	TCNNGA	5 cut(s)	532, 727, 1301, 1885, 2828
Hpy8I	GTNNAC	6 cut(s)	177, 782, 1976, 2054, 2165, 3039
Hpy99I	CGWCG	7 cut(s)	62, 65, 76, 116, 168, 1868, 3210
HpyAV	CCTTC	8 cut(s)	1117, 1298, 1547, 1630, 2198, 2316, 2473, 2712
HpyCH4III	ACNGT	6 cut(s)	50, 1132, 1465, 2545, 2785, 3049
HpyCH4IV	ACGT	4 cut(s)	215, 784, 1378, 2497
HpyF10VI	GCNNNNNNNGC	7 cut(s)	251, 593, 602, 912, 1367, 1994, 2003
HpyF3I	CTNAG	9 cut(s)	99, 1206, 1563, 1593, 2186, 2253, 2315, 2418, 2673
HpySE526I	ACGT	4 cut(s)	215, 784, 1378, 2497
HspAI	GCGC	3 cut(s)	605, 1087, 2312
KpnI	GGTACC	1 cut(s)	1443
Ksp22I	TGATCA	2 cut(s)	844, 1843
LmnI	GCTCC	3 cut(s)	1250, 2371, 2654
Lsp1109I	GCAGC	8 cut(s)	241, 400, 574, 666, 953, 1783, 1865, 2591
LweI	GCATC	3 cut(s)	1056, 2059, 2353
MabI	ACCWGGT	1 cut(s)	1685
MaeI	CTAG	7 cut(s)	350, 677, 903, 1044, 2660, 3168, 3231
MaeII	ACGT	4 cut(s)	215, 784, 1378, 2497
MfeI	CAATTG	2 cut(s)	333, 891
MflI	RGATCY	4 cut(s)	494, 559, 2044, 2182
MhlI	GDGCHC	5 cut(s)	20, 235, 1409, 1657, 2659
MlsI	TGGCCA	1 cut(s)	1179
MluNI	TGGCCA	1 cut(s)	1179
MmeI	TCCRAC	4 cut(s)	110, 522, 1991, 2560
Mox20I	TGGCCA	1 cut(s)	1179
MroXI	GAANNNNTTC	3 cut(s)	951, 1962, 2213
MscI	TGGCCA	1 cut(s)	1179
MslI	CAYNNNNRTG	4 cut(s)	578, 686, 1286, 2155
Msp20I	TGGCCA	1 cut(s)	1179
MspA1I	CMGCKG	1 cut(s)	2728
MspI	CCGG	8 cut(s)	39, 54, 172, 453, 511, 1218, 3052, 3195
MspR9I	CCNGG	5 cut(s)	453, 511, 1687, 2058, 2923
MunI	CAATTG	2 cut(s)	333, 891
MvaI	CCWGG	3 cut(s)	1687, 2058, 2923
MwoI	GCNNNNNNNGC	7 cut(s)	251, 593, 602, 912, 1367, 1994, 2003
NciI	CCSGG	2 cut(s)	453, 511
NdeI	CATATG	2 cut(s)	490, 1948
NheI	GCTAGC	1 cut(s)	1043
NlaIV	GGNNCC	6 cut(s)	496, 852, 1252, 1441, 2046, 2724
NmeAIII	GCCGAG	1 cut(s)	1388
NmuCI	GTSAC	5 cut(s)	688, 701, 1264, 1276, 2992
NspI	RCATGY	5 cut(s)	107, 239, 1395, 1485, 2333
PaeI	GCATGC	1 cut(s)	107
PaqCI	CACCTGC	1 cut(s)	1072
PceI	AGGCCT	3 cut(s)	411, 1308, 1370
PciI	ACATGT	1 cut(s)	2329
PdmI	GAANNNNTTC	3 cut(s)	951, 1962, 2213
PfeI	GAWTC	9 cut(s)	168, 272, 730, 2177, 2632, 2686, 2761, 2837, 3010
PfoI	TCCNGGA	1 cut(s)	451
Ppu21I	YACGTR	1 cut(s)	1379
PscI	ACATGT	1 cut(s)	2329
PshAI	GACNNNNGTC	2 cut(s)	1466, 2391
PshBI	ATTAAT	1 cut(s)	1017
PsiI	TTATAA	1 cut(s)	2639
Psp6I	CCWGG	3 cut(s)	1685, 2056, 2921
PspEI	GGTNACC	1 cut(s)	1000
PspFI	CCCAGC	1 cut(s)	607
PspGI	CCWGG	3 cut(s)	1685, 2056, 2921
PspN4I	GGNNCC	6 cut(s)	496, 852, 1252, 1441, 2046, 2724
PspPI	GGNCC	1 cut(s)	1995
PstI	CTGCAG	4 cut(s)	390, 723, 1650, 2008
PstNI	CAGNNNCTG	2 cut(s)	2623, 3140
PsuI	RGATCY	4 cut(s)	494, 559, 2044, 2182
RsaI	GTAC	7 cut(s)	1377, 1441, 2106, 2416, 2601, 3003, 3138
RsaNI	GTAC	7 cut(s)	1376, 1440, 2105, 2415, 2600, 3002, 3137
RseI	CAYNNNNRTG	4 cut(s)	578, 686, 1286, 2155
SalI	GTCGAC	1 cut(s)	2052
Sau96I	GGNCC	1 cut(s)	1995
ScrFI	CCNGG	5 cut(s)	453, 511, 1687, 2058, 2923
SduI	GDGCHC	5 cut(s)	20, 235, 1409, 1657, 2659
SexAI	ACCWGGT	1 cut(s)	1685
SfaNI	GCATC	3 cut(s)	1056, 2059, 2353
SfcI	CTRYAG	5 cut(s)	386, 719, 1646, 1932, 2004
SmiMI	CAYNNNNRTG	4 cut(s)	578, 686, 1286, 2155
SmlI	CTYRAG	1 cut(s)	1658
SmoI	CTYRAG	1 cut(s)	1658
SnaBI	TACGTA	1 cut(s)	1379
SphI	GCATGC	1 cut(s)	107
SseBI	AGGCCT	3 cut(s)	411, 1308, 1370
SsiI	CCGC	7 cut(s)	124, 140, 197, 1743, 2170, 2556, 2726
SspI	AATATT	2 cut(s)	2515, 3201
SspMI	CTAG	7 cut(s)	350, 677, 903, 1044, 2660, 3168, 3231
StuI	AGGCCT	3 cut(s)	411, 1308, 1370
StyD4I	CCNGG	5 cut(s)	451, 509, 1685, 2056, 2921
StyI	CCWWGG	4 cut(s)	412, 521, 1371, 2139
TaaI	ACNGT	6 cut(s)	50, 1132, 1465, 2545, 2785, 3049
TaiI	ACGT	4 cut(s)	218, 787, 1381, 2500
TaqI	TCGA	7 cut(s)	74, 114, 166, 1470, 2053, 2716, 3021
TatI	WGTACW	1 cut(s)	3001
TauI	GCSGC	2 cut(s)	143, 2558
TfiI	GAWTC	9 cut(s)	168, 272, 730, 2177, 2632, 2686, 2761, 2837, 3010
TscAI	CASTG	9 cut(s)	880, 1066, 1432, 1655, 1790, 2079, 2548, 2877, 2997
TseFI	GTSAC	5 cut(s)	688, 701, 1264, 1276, 2992
TseI	GCWGC	8 cut(s)	254, 388, 587, 654, 966, 1796, 1853, 2579
Tsp45I	GTSAC	5 cut(s)	688, 701, 1264, 1276, 2992
TspDTI	ATGAA	9 cut(s)	1099, 1685, 1697, 1766, 1785, 1965, 2515, 2925, 2949
TspGWI	ACGGA	5 cut(s)	100, 265, 1646, 2207, 3194
TspRI	CASTG	9 cut(s)	880, 1066, 1432, 1655, 1790, 2079, 2548, 2877, 2997
VspI	ATTAAT	1 cut(s)	1017
XapI	RAATTY	8 cut(s)	326, 447, 1229, 1672, 2522, 2901, 2912, 2936
XceI	RCATGY	5 cut(s)	107, 239, 1395, 1485, 2333
XcmI	CCANNNNNNNNNTGG	1 cut(s)	528
XmiI	GTMKAC	4 cut(s)	176, 781, 2053, 2164
XmnI	GAANNNNTTC	3 cut(s)	951, 1962, 2213
XspI	CTAG	7 cut(s)	350, 677, 903, 1044, 2660, 3168, 3231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.