Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003103

Physical Location & Seq

Genomic Coordinates Forward (+)

12765869 .. 12781947

Gene Structure 16079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2985 bp

ATGAGTCACCCAATAAGCAGCTCGCCTGACCAACCAAACCAGGATTTAGAGGCCGGAAGCAGTCGCTCAGGCAACGTGAACGACGATGAGTCGTGGACCGATCCTTTTGATATGAACAGTACCAAGTATGCTTCTGTTGAACGCCTCAAGCGTTGGAGGAAAGCAGCACTTGTACTGAATTCTTCTCGCCGATTCCGATACACCCTCAACTTGAAAAAGGAAGAAGAGAAGAAACAGATACTGAGGAAGATAAGAGCACATGCACAAGCCATACGAGCTGCATCTTTATACACAGAAGTTGGAAATCCCTTGCAAGGTACTTTACAACCGATACCATCTGCTGCTGGCGATTTTCAGATTGCCCATGAGCAACTTGTTTCAGTCAGTGGCTTAGCAGATTTATTGAAAACCAATCTACACAAGGGAATTCTTGGTGATAGTGCTGACTGTCTAAACCGGAAAAATGCATTTGGATCCAACACATATCCTCCTGGAAGAGCAAGGAGTTTCTGGCTCTTTTCTCTCCTTCTTATAGACTATTCTTTGGGAAGCCTGGCAAGACCTTACTCTGATCATTTTGATGATAGCAGCAGTGGCTACCTTAGGGCTACATATAAATATGAAGGTGAGCCTGGCAGTGTATACTCGGATATGAAGGAGGAATGGTATGGTGGTGGCAGCATTGCTTTAGCCGTTATTCTTGTCATTGTTGTCATAGCCATTAGTGATTACAATGAATCCCTGCGCTTCCAGAGTTTGATTGCAGAGAGGAGAAATATACATTTAGAGGTCATCAGAGGTGGTAGACGAGTTGAGGTTTCTATCTATGATATTGTCGTTGGTGATGTTTTACCGCTTAGCATTGGTGATCAGGTCCCTGCTGATGGTATTTTAATCACTGGCTACTCACTTGCTACAGAGGAGACCCAAATCATTGGGGATAGCAAGATTGTTCACAAGGACTGCAAGGACCCATTTCTGATGTCTGGCTGCAAAATTGCATATGGGAGTGGTACAATGCTGGTAACTAGTGTAGGGATGAATACTGAATGGGGTTTGCTCATGGCTCGTATTTCAGAAGATATTGGTGAAGAAACACCTGTGCAGGTGGGTTTAAATGGAGTTGCTACTGTCATTGGAGTTGTTGGGGTCGTAATAGCTCTTTTCGTCTTCATTTTCGATTTAGTTAGATTATTTACTGGCCATTCAAGCAATCCAGATGGAACTCCTCAGTTTGTAGCCGGCAAGACTGGATTTGAAAAAGCCATTCAACTTAGTATCATTGTAGTGACCAATGTAATGGTTGCTGTACCTGAAGGGCTCCCTATTGCTGTCATGTTAATCCTTGCCTATTCCATGACCAAAATGATGGCAGATAAGGTCTTGGTGCGGAGGCAATCTGCATGCGAGGCTATAGGCTCTGCCACAACTATTTGCATTGATAAGACTGGACTTTTAACTTCGAACCAGATGACTGTTGTTGAGGCTTATGTTGGTGGGAAGAAAATCTATCCTTCAGACAATAAGTCGCGATTGTCTCCAGTGCTATGGTCCTTAATTATTGAAAGCATTGCACAGAACACAAATGGCAGTGTCTACATGGCTGAGAATGGTGGTGATGTAGAGGTTTATGGATCACCAACTGAAAAAGCAATTCTGCGCTGGGGGATTAAGATTGGAATGAATTTTGAAGCCACGAAGTCTGAATCTACAGTTCTTCATGCGCTCGCATTTAACTCGGTGAAGAAACGAAGTGCTGTTGCACTTAAATTGGCCAATTCTCAAGTTCATATACACTGGAAAGGGGCTGCTGAAACAATCTTGGCCTCATGCACAAAGTACATTGATGCTAATGATCACTTGGCAGCAATGGATGAAGATAAGTTAATGTTTTTCAATGAAGCTATTGAGGGTATGGCTTCTGGAAGTCTGCGGTGCGTTGCTATTGCATATAGGTTATACGAGTTTGAAAATGTTCCAACTGATGAACAACTAGTTCGGTGGGCATTACCTGAGGATGACCTTATTTTACTTGCTATTGTTGGCATAGAGGATCCTTGTCAGCCAGGAGTCAGGGATGCAGTGCGACAATGCCAAAATGCTGGTGTTAAGGTATGCATGGTTACGGGTGACAATCTTCAAACAGCAAAAGCAATTGCTTTGGAGTGTGGCATACTTGGTTCCGAAGCAGATGCTACTGAACAAAATATCATTGAAGGAAGAGTATTTCGTGCCTTTTCTGATAAGCAAAGAGAAGATTTAGCTGAGATGATATCAGTGATGGGACGAGCTTCGCCCAATGACAAGCTTCTTCTTGTGCAAGCACTGAAGAAAAGGGGACATGTTGTTGCTGTCACTGGTGATGGTTGTAATGATGCTCCTGCATTATATGAGGCTATCAAATGGGGTCGATCTGTATATTCAAATATTCAGAAATTTACCCAGTTCCATCTTACAGTTGGACTTGCAGCATTAATCATAAATGTCACGGCAGAAGTTTCCTCTGGTTCAGCTCCATTAAATGCTGTGCAGATTCTCTGGGTAAGCATTATCATGGACACTCAAGGAGCACTAGTATTGCGTACTGATCCACCATCTGATAACCTGATGCGGAAGCCTCCTGTTGATCGAAGGAATTTGCCGAATTTGGAACTTGCTGATTACAATGTGATGAATACAATGATATTCAATGCTTTTGTCCTTTGTCAAATTTTCAATGAATTCAATGCTCGAAAGCCTGAGGAATATAACATTTTCAAAGGAATTACTTCAAACTATCTCTTTGTGGGAACAGTGGGAATAACTCTTGTGCTTCAGATTATTGCCATTGAGTTCCTTGGGAAATTTACTTCAACTGTGAGGCTTAACTTGAAGCAGTGGCTGATTTCCGTCATCATTGGTTTTATCAGTTGGCCCCTTGATGCTATCGGGAAACTCATACCAGTTCCAAAAACTCCCTTCATCAGGTTTGCCTTGAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

994

Amino Acids

108.88

Weight (kDa)

5.98

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	34 - 76	1.6e-15	Ca2+-ATPase N terminal autoinhibitory domain
E1-E2_ATPase	PF00122	263 - 356	9.6e-15	P-type ATPase actuator domain
Hydrolase	PF00702	477 - 796	2.5e-14	haloacid dehalogenase-like hydrolase
Cation_ATPase	PF13246	529 - 689	3.7e-27	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	838 - 878	3.3e-09	Cation transporting ATPase, C-terminus
Cation_ATPase_C	PF00689	891 - 980	4.6e-19	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29900 AT4G29900 AT5G57110 AT5G57110 AT5G57110
fragaria_vesca	FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940
malus_domestica	MD13G1241000.v1.1 MD16G1245600.v1.1 MD16G1246100.v1.1
prunus_persica	Prupe.1G072600_v2.0.a1 Prupe.8G012900_v2.0.a1
pyrus_communis	pycom13g21220
rosa_chinensis	RchiOBHm_Chr4g0398891 RchiOBHm_Chr4g0398951
rosa_laevigata	RLG00000009307 RLG00000009309 RLG00000009365
rosa_multiflora	Rmu_sc0004094.1_g000033 Rmu_ssc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343340 Rroxscaffold_5G00343930 Rroxscaffold_5G00344000
rosa_rugosa	Rorug04G0013200
rosa_samantha	Rh4AG091100 Rh4CG093100 Rh4CG099100 Rh4CG099400
rosa_wichuraiana	Rw4G007100 Rw4G007130 Rw4G007500 Rw4G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1096
Acc36I	ACCTGC	1 cut(s)	1096
AccI	GTMKAC	3 cut(s)	642, 805, 1596
AccII	CGCG	1 cut(s)	1531
AciI	CCGC	4 cut(s)	854, 1390, 1933, 2611
AclWI	GGATC	7 cut(s)	95, 468, 481, 1642, 2048, 2061, 2582
AcoI	YGGCCR	2 cut(s)	1201, 1773
AcsI	RAATTY	9 cut(s)	178, 426, 1684, 2435, 2635, 2644, 2709, 2720, 2843
AcuI	CTGAAG	4 cut(s)	1335, 1500, 2348, 2798
AfaI	GTAC	7 cut(s)	121, 174, 319, 1015, 1311, 1841, 2584
AfiI	CCNNNNNNNGG	3 cut(s)	314, 884, 2964
AflIII	ACRYGT	1 cut(s)	2341
AhdI	GACNNNNNGTC	2 cut(s)	88, 1525
AhlI	ACTAGT	3 cut(s)	1028, 1993, 2572
AjnI	CCWGG	5 cut(s)	39, 490, 552, 631, 2065
AluBI	AGCT	8 cut(s)	21, 278, 1160, 1904, 2264, 2291, 2308, 2513
AluI	AGCT	8 cut(s)	21, 278, 1160, 1904, 2264, 2291, 2308, 2513
Alw21I	GWGCWC	2 cut(s)	259, 2572
Alw26I	GTCTC	2 cut(s)	917, 1542
AlwI	GGATC	7 cut(s)	95, 468, 481, 1642, 2048, 2061, 2582
AlwNI	CAGNNNCTG	2 cut(s)	241, 2881
AoxI	GGCC	5 cut(s)	51, 1201, 1773, 1824, 2912
ApoI	RAATTY	9 cut(s)	178, 426, 1684, 2435, 2635, 2644, 2709, 2720, 2843
AseI	ATTAAT	1 cut(s)	2474
Asp700I	GAANNNNTTC	2 cut(s)	1974, 2767
AspLEI	GCGC	3 cut(s)	747, 1662, 1726
AspS9I	GGNCC	5 cut(s)	96, 874, 970, 1551, 2913
AsuII	TTCGAA	1 cut(s)	1463
AvaII	GGWCC	4 cut(s)	96, 874, 970, 1551
AxyI	CCTNAGG	3 cut(s)	602, 2013, 2739
BalI	TGGCCA	2 cut(s)	1203, 1775
BamHI	GGATCC	2 cut(s)	473, 2053
BanII	GRGCYC	1 cut(s)	1323
BbsI	GAAGAC	1 cut(s)	1162
Bbv12I	GWGCWC	2 cut(s)	259, 2572
BccI	CCATC	8 cut(s)	343, 878, 1214, 1363, 2275, 2357, 2457, 2602
BceAI	ACGGC	2 cut(s)	677, 2505
BcgI	CGANNNNNNTGC	4 cut(s)	1719, 1753, 2174, 2208
BciT130I	CCWGG	5 cut(s)	41, 492, 554, 633, 2067
BclI	TGATCA	3 cut(s)	571, 868, 1855
BcoDI	GTCTC	2 cut(s)	917, 1542
BcuI	ACTAGT	3 cut(s)	1028, 1993, 2572
BfaI	CTAG	3 cut(s)	1029, 1994, 2573
BfmI	CTRYAG	3 cut(s)	915, 1413, 1710
BfuAI	ACCTGC	1 cut(s)	1096
BlpI	GCTNAGC	2 cut(s)	391, 857
Bme1390I	CCNGG	5 cut(s)	41, 492, 554, 633, 2067
Bme18I	GGWCC	4 cut(s)	96, 874, 970, 1551
BmeRI	GACNNNNNGTC	2 cut(s)	88, 1525
BmgT120I	GGNCC	5 cut(s)	96, 874, 970, 1551, 2913
BmiI	GGNNCC	7 cut(s)	475, 876, 972, 1322, 2055, 2182, 2915
BmrFI	CCNGG	5 cut(s)	41, 492, 554, 633, 2067
BmrI	ACTGGG	1 cut(s)	2437
BmsI	GCATC	7 cut(s)	290, 1837, 2068, 2182, 2365, 2598, 2911
BmuI	ACTGGG	1 cut(s)	2437
BpiI	GAAGAC	1 cut(s)	1162
BpmI	CTGGAG	1 cut(s)	1524
Bpu10I	CCTNAGC	1 cut(s)	67
Bpu1102I	GCTNAGC	2 cut(s)	391, 857
Bpu14I	TTCGAA	1 cut(s)	1463
BpuEI	CTTGAG	3 cut(s)	131, 1767, 2547
BsaI	GGTCTC	1 cut(s)	917
BsaJI	CCNNGG	1 cut(s)	2836
BsaWI	WCCGGW	1 cut(s)	456
BsaXI	ACNNNNNCTCC	6 cut(s)	472, 502, 650, 680, 2559, 2589
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 884, 2964
Bse118I	RCCGGY	1 cut(s)	1241
Bse1I	ACTGG	9 cut(s)	904, 1204, 1255, 1453, 1541, 1802, 2362, 2443, 2942
Bse21I	CCTNAGG	3 cut(s)	602, 2013, 2739
Bse3DI	GCAATG	3 cut(s)	681, 1569, 1875
BseBI	CCWGG	5 cut(s)	41, 492, 554, 633, 2067
BseDI	CCNNGG	1 cut(s)	2836
BseGI	GGATG	4 cut(s)	1044, 1879, 2023, 2083
BseLI	CCNNNNNNNGG	3 cut(s)	314, 884, 2964
BseMI	GCAATG	3 cut(s)	681, 1569, 1875
BseMII	CTCAG	7 cut(s)	81, 233, 1244, 1596, 2004, 2256, 2730
BseNI	ACTGG	9 cut(s)	904, 1204, 1255, 1453, 1541, 1802, 2362, 2443, 2942
BseRI	GAGGAG	3 cut(s)	784, 935, 1218
BseYI	CCCAGC	1 cut(s)	1662
BsgI	GTGCAG	2 cut(s)	1124, 2549
Bsh1236I	CGCG	1 cut(s)	1531
BshFI	GGCC	5 cut(s)	53, 1203, 1775, 1826, 2914
BsiHKAI	GWGCWC	2 cut(s)	259, 2572
BsiSI	CCGG	3 cut(s)	54, 457, 1242
BslFI	GGGAC	3 cut(s)	860, 2298, 2352
BslI	CCNNNNNNNGG	3 cut(s)	314, 884, 2964
BsmAI	GTCTC	2 cut(s)	917, 1542
BsmFI	GGGAC	3 cut(s)	860, 2298, 2352
BsnI	GGCC	5 cut(s)	53, 1203, 1775, 1826, 2914
Bso31I	GGTCTC	1 cut(s)	917
Bsp119I	TTCGAA	1 cut(s)	1463
Bsp1286I	GDGCHC	3 cut(s)	259, 1323, 2572
Bsp1720I	GCTNAGC	2 cut(s)	391, 857
Bsp68I	TCGCGA	1 cut(s)	1531
BspACI	CCGC	4 cut(s)	854, 1390, 1933, 2611
BspANI	GGCC	5 cut(s)	53, 1203, 1775, 1826, 2914
BspCNI	CTCAG	7 cut(s)	80, 234, 1243, 1597, 2005, 2257, 2731
BspFNI	CGCG	1 cut(s)	1531
BspLI	GGNNCC	7 cut(s)	475, 876, 972, 1322, 2055, 2182, 2915
BspMI	ACCTGC	1 cut(s)	1096
BspPI	GGATC	7 cut(s)	95, 468, 481, 1642, 2048, 2061, 2582
BspQI	GCTCTTC	1 cut(s)	490
BspT104I	TTCGAA	1 cut(s)	1463
BspTNI	GGTCTC	1 cut(s)	917
BsrDI	GCAATG	3 cut(s)	681, 1569, 1875
BsrFI	RCCGGY	1 cut(s)	1241
BsrI	ACTGG	9 cut(s)	904, 1204, 1255, 1453, 1541, 1802, 2362, 2443, 2942
BssAI	RCCGGY	1 cut(s)	1241
BssECI	CCNNGG	1 cut(s)	2836
BssNAI	GTATAC	1 cut(s)	643
BssT1I	CCWWGG	1 cut(s)	2836
Bst1107I	GTATAC	1 cut(s)	643
Bst2UI	CCWGG	5 cut(s)	41, 492, 554, 633, 2067
Bst4CI	ACNGT	8 cut(s)	119, 449, 1132, 1477, 1714, 2458, 2794, 2857
Bst6I	CTCTTC	3 cut(s)	219, 490, 2215
BstBI	TTCGAA	1 cut(s)	1463
BstC8I	GCNNGC	6 cut(s)	23, 346, 1243, 1405, 1728, 2322
BstENI	CCTNNNNNAGG	1 cut(s)	2962
BstF5I	GGATG	4 cut(s)	1044, 1879, 2023, 2083
BstFNI	CGCG	1 cut(s)	1531
BstHHI	GCGC	3 cut(s)	747, 1662, 1726
BstMAI	GTCTC	2 cut(s)	917, 1542
BstMWI	GCNNNNNNNGC	4 cut(s)	275, 594, 1209, 1409
BstNI	CCWGG	5 cut(s)	41, 492, 554, 633, 2067
BstNSI	RCATGY	3 cut(s)	263, 1407, 2345
BstSCI	CCNGG	5 cut(s)	39, 490, 552, 631, 2065
BstSFI	CTRYAG	3 cut(s)	915, 1413, 1710
BstUI	CGCG	1 cut(s)	1531
BstV2I	GAAGAC	1 cut(s)	1162
BstX2I	RGATCY	2 cut(s)	473, 2053
BstXI	CCANNNNNNTGG	5 cut(s)	935, 1300, 1369, 1548, 2102
BstYI	RGATCY	2 cut(s)	473, 2053
BstZ17I	GTATAC	1 cut(s)	643
Bsu36I	CCTNAGG	3 cut(s)	602, 2013, 2739
BsuRI	GGCC	5 cut(s)	53, 1203, 1775, 1826, 2914
BtsCI	GGATG	4 cut(s)	1044, 1879, 2023, 2083
BtsI	GCAGTG	5 cut(s)	598, 643, 1597, 2088, 2882
BtuMI	TCGCGA	1 cut(s)	1531
BveI	ACCTGC	1 cut(s)	1096
Cac8I	GCNNGC	6 cut(s)	23, 346, 1243, 1405, 1728, 2322
CaiI	CAGNNNCTG	2 cut(s)	241, 2881
CfoI	GCGC	3 cut(s)	747, 1662, 1726
Cfr10I	RCCGGY	1 cut(s)	1241
Cfr13I	GGNCC	5 cut(s)	96, 874, 970, 1551, 2913
Csp6I	GTAC	7 cut(s)	120, 173, 318, 1014, 1310, 1840, 2583
CviQI	GTAC	7 cut(s)	120, 173, 318, 1014, 1310, 1840, 2583
DraI	TTTAAA	1 cut(s)	1116
DriI	GACNNNNNGTC	2 cut(s)	88, 1525
EaeI	YGGCCR	2 cut(s)	1201, 1773
Eam1104I	CTCTTC	3 cut(s)	219, 490, 2215
Eam1105I	GACNNNNNGTC	2 cut(s)	88, 1525
EarI	CTCTTC	3 cut(s)	219, 490, 2215
Eco130I	CCWWGG	1 cut(s)	2836
Eco24I	GRGCYC	1 cut(s)	1323
Eco31I	GGTCTC	1 cut(s)	917
Eco32I	GATATC	1 cut(s)	2274
Eco47I	GGWCC	4 cut(s)	96, 874, 970, 1551
Eco57I	CTGAAG	4 cut(s)	1335, 1500, 2348, 2798
Eco81I	CCTNAGG	3 cut(s)	602, 2013, 2739
EcoNI	CCTNNNNNAGG	1 cut(s)	2962
EcoO109I	RGGNCCY	2 cut(s)	874, 970
EcoRI	GAATTC	3 cut(s)	178, 426, 2720
EcoRII	CCWGG	5 cut(s)	39, 490, 552, 631, 2065
EcoRV	GATATC	1 cut(s)	2274
EcoT14I	CCWWGG	1 cut(s)	2836
EcoT22I	ATGCAT	2 cut(s)	469, 2120
EcoT38I	GRGCYC	1 cut(s)	1323
ErhI	CCWWGG	1 cut(s)	2836
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	3 cut(s)	860, 2298, 2352
FauNDI	CATATG	1 cut(s)	1003
FbaI	TGATCA	3 cut(s)	571, 868, 1855
FblI	GTMKAC	3 cut(s)	642, 805, 1596
FokI	GGATG	4 cut(s)	1051, 1886, 2030, 2090
FriOI	GRGCYC	1 cut(s)	1323
FspBI	CTAG	3 cut(s)	1029, 1994, 2573
GlaI	GCGC	3 cut(s)	746, 1661, 1725
GsaI	CCCAGC	1 cut(s)	1666
GsuI	CTGGAG	1 cut(s)	1524
HaeIII	GGCC	5 cut(s)	53, 1203, 1775, 1826, 2914
HapII	CCGG	3 cut(s)	54, 457, 1242
HhaI	GCGC	3 cut(s)	747, 1662, 1726
Hin6I	GCGC	3 cut(s)	745, 1660, 1724
HinP1I	GCGC	3 cut(s)	745, 1660, 1724
HindIII	AAGCTT	1 cut(s)	2306
HinfI	GANTC	7 cut(s)	4, 89, 192, 737, 1706, 2070, 2533
HpaII	CCGG	3 cut(s)	54, 457, 1242
Hpy166II	GTNNAC	6 cut(s)	79, 96, 643, 806, 955, 1597
Hpy188III	TCNNGA	5 cut(s)	751, 1217, 1530, 1923, 2929
Hpy8I	GTNNAC	6 cut(s)	79, 96, 643, 806, 955, 1597
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	8 cut(s)	536, 617, 649, 1310, 1524, 2210, 2625, 2968
HpyCH4III	ACNGT	8 cut(s)	119, 449, 1132, 1477, 1714, 2458, 2794, 2857
HpyCH4IV	ACGT	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	4 cut(s)	275, 594, 1209, 1409
HpySE526I	ACGT	1 cut(s)	75
HspAI	GCGC	3 cut(s)	745, 1660, 1724
KroI	GCCGGC	1 cut(s)	1241
KroNI	GCCGGC	1 cut(s)	1243
Ksp22I	TGATCA	3 cut(s)	571, 868, 1855
LguI	GCTCTTC	1 cut(s)	490
LmnI	GCTCC	4 cut(s)	1326, 2383, 2518, 2567
LweI	GCATC	7 cut(s)	290, 1837, 2068, 2182, 2365, 2598, 2911
MaeI	CTAG	3 cut(s)	1029, 1994, 2573
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	7 cut(s)	5, 1024, 1288, 2122, 2129, 2353, 2485
MfeI	CAATTG	1 cut(s)	2154
MflI	RGATCY	2 cut(s)	473, 2053
MhlI	GDGCHC	3 cut(s)	259, 1323, 2572
MlsI	TGGCCA	2 cut(s)	1203, 1775
MluNI	TGGCCA	2 cut(s)	1203, 1775
MlyI	GAGTC	3 cut(s)	13, 98, 2079
MmeI	TCCRAC	5 cut(s)	134, 280, 501, 2003, 2440
Mox20I	TGGCCA	2 cut(s)	1203, 1775
Mph1103I	ATGCAT	2 cut(s)	469, 2120
MroNI	GCCGGC	1 cut(s)	1241
MroXI	GAANNNNTTC	2 cut(s)	1974, 2767
MscI	TGGCCA	2 cut(s)	1203, 1775
MslI	CAYNNNNRTG	3 cut(s)	579, 1286, 2552
Msp20I	TGGCCA	2 cut(s)	1203, 1775
MspI	CCGG	3 cut(s)	54, 457, 1242
MspR9I	CCNGG	5 cut(s)	41, 492, 554, 633, 2067
MunI	CAATTG	1 cut(s)	2154
MvaI	CCWGG	5 cut(s)	41, 492, 554, 633, 2067
MvnI	CGCG	1 cut(s)	1531
MwoI	GCNNNNNNNGC	4 cut(s)	275, 594, 1209, 1409
NaeI	GCCGGC	1 cut(s)	1243
NdeI	CATATG	1 cut(s)	1003
NgoMIV	GCCGGC	1 cut(s)	1241
NlaIV	GGNNCC	7 cut(s)	475, 876, 972, 1322, 2055, 2182, 2915
NmuCI	GTSAC	5 cut(s)	5, 1288, 2129, 2353, 2485
NruI	TCGCGA	1 cut(s)	1531
NsiI	ATGCAT	2 cut(s)	469, 2120
NspI	RCATGY	3 cut(s)	263, 1407, 2345
NspV	TTCGAA	1 cut(s)	1463
PaeI	GCATGC	1 cut(s)	1407
PaqCI	CACCTGC	1 cut(s)	1096
PciI	ACATGT	1 cut(s)	2341
PciSI	GCTCTTC	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 148, 193
PdiI	GCCGGC	1 cut(s)	1243
PdmI	GAANNNNTTC	2 cut(s)	1974, 2767
PfeI	GAWTC	4 cut(s)	192, 737, 1706, 2533
PfoI	TCCNGGA	1 cut(s)	490
PleI	GAGTC	3 cut(s)	12, 97, 2078
PpsI	GAGTC	3 cut(s)	12, 97, 2078
PpuMI	RGGWCCY	2 cut(s)	874, 970
PscI	ACATGT	1 cut(s)	2341
PshBI	ATTAAT	1 cut(s)	2474
Psp5II	RGGWCCY	2 cut(s)	874, 970
Psp6I	CCWGG	5 cut(s)	39, 490, 552, 631, 2065
PspFI	CCCAGC	1 cut(s)	1662
PspGI	CCWGG	5 cut(s)	39, 490, 552, 631, 2065
PspN4I	GGNNCC	7 cut(s)	475, 876, 972, 1322, 2055, 2182, 2915
PspPI	GGNCC	5 cut(s)	96, 874, 970, 1551, 2913
PspPPI	RGGWCCY	2 cut(s)	874, 970
PstNI	CAGNNNCTG	2 cut(s)	241, 2881
PsuI	RGATCY	2 cut(s)	473, 2053
RruI	TCGCGA	1 cut(s)	1531
RsaI	GTAC	7 cut(s)	121, 174, 319, 1015, 1311, 1841, 2584
RsaNI	GTAC	7 cut(s)	120, 173, 318, 1014, 1310, 1840, 2583
RseI	CAYNNNNRTG	3 cut(s)	579, 1286, 2552
SapI	GCTCTTC	1 cut(s)	490
Sau96I	GGNCC	5 cut(s)	96, 874, 970, 1551, 2913
SchI	GAGTC	3 cut(s)	13, 98, 2079
ScrFI	CCNGG	5 cut(s)	41, 492, 554, 633, 2067
SduI	GDGCHC	3 cut(s)	259, 1323, 2572
SfaNI	GCATC	7 cut(s)	290, 1837, 2068, 2182, 2365, 2598, 2911
SfcI	CTRYAG	3 cut(s)	915, 1413, 1710
SfuI	TTCGAA	1 cut(s)	1463
SinI	GGWCC	4 cut(s)	96, 874, 970, 1551
SmiMI	CAYNNNNRTG	3 cut(s)	579, 1286, 2552
SmlI	CTYRAG	3 cut(s)	146, 1782, 2562
SmoI	CTYRAG	3 cut(s)	146, 1782, 2562
SpeI	ACTAGT	3 cut(s)	1028, 1993, 2572
SphI	GCATGC	1 cut(s)	1407
SsiI	CCGC	4 cut(s)	854, 1390, 1933, 2611
SspI	AATATT	1 cut(s)	2428
SspMI	CTAG	3 cut(s)	1029, 1994, 2573
StyD4I	CCNGG	5 cut(s)	39, 490, 552, 631, 2065
StyI	CCWWGG	1 cut(s)	2836
TaaI	ACNGT	8 cut(s)	119, 449, 1132, 1477, 1714, 2458, 2794, 2857
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	5 cut(s)	1179, 1463, 2410, 2629, 2731
TaqII	GACCGA	1 cut(s)	113
TatI	WGTACW	2 cut(s)	172, 1839
TfiI	GAWTC	4 cut(s)	192, 737, 1706, 2533
TseFI	GTSAC	5 cut(s)	5, 1288, 2129, 2353, 2485
Tsp45I	GTSAC	5 cut(s)	5, 1288, 2129, 2353, 2485
TspGWI	ACGGA	1 cut(s)	2878
VpaK11BI	GGWCC	4 cut(s)	96, 874, 970, 1551
VspI	ATTAAT	1 cut(s)	2474
XagI	CCTNNNNNAGG	1 cut(s)	2962
XapI	RAATTY	9 cut(s)	178, 426, 1684, 2435, 2635, 2644, 2709, 2720, 2843
XceI	RCATGY	3 cut(s)	263, 1407, 2345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2456
XmiI	GTMKAC	3 cut(s)	642, 805, 1596
XmnI	GAANNNNTTC	2 cut(s)	1974, 2767
XspI	CTAG	3 cut(s)	1029, 1994, 2573
Zsp2I	ATGCAT	2 cut(s)	469, 2120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.