Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003103

Physical Location & Seq

Genomic Coordinates Reverse (-)

2060379 .. 2138527

Gene Structure 78149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0013200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3627 bp

ATGGCGAATCAAGCAGCCAATTCTTCTTCTTCTACTGATCATTACGCATACGAGGTGTTCCTGAGTTTTAGAGGCCAGGATACACGCTCTAATTTCACCAGTCATTTACACAACGCTTTGCATCAGAAGGGTATCAAGACCTTCATAGATGATGAGCTTCCTAGAGGAGAAGAAATATCGCAAGAGCTTCTCAAAGCAATTGAGGACTCCAAGATCTCAATCATCGTCTTCTCTCAAAACTACGCTTCCTCAAGGTGGTGTTTAGATGAGCTCGTCAAGATCCTTCAATGCAGAAAATCAAACCGACAAACGGTTAAACCCGTTTTCTACAAGGTGGATCCCTCGGATGTACGACACCAAACAGGTGCTTTTGGTGCGGGATTTGCTAAACTTGATCAATGCAAATTCAAGGATAGCCTGAGCAAATGGAGGGCAGCTCTTTCACAAGCAGCAAGTTTGTCTGGATGGACTTTCTCGCATGGCAAGAATGAGTCAAACTTCATCAACGAGATTGTTAATGAGCTGTCAGACCAAGTATTGAACTGTTCATATGATCTGGATGTGGCTAAAAATCCAGTTGGAATAGAGTCTTGTGTTCAAGATATGGAGAAGCTTTTAAATGTCGATGATAAAAATATTGTTCGCATGGTCGGGATATGGGGGACTGGTGGAATAGGTAAGACAACAATTGCTAAGGCGGTCTATAATCTGATTTCCCATAAGTTCGAAAGTAGATGTTTCTTGGCAAATGTCAGATCAAAATCAGCGAACCAAGAAGGCTTGGCCCAATTGCAAGAGACTCTTCTGCAAGATCTTCTAAGGGAAAAAAACTTGAAGGTGAATGATGTATCTAATGGAGTAAATGTGATAAAAAGAAGGCTTGCCCAGAAAAAAGTTCTCTTGATTCTTGATGATGTGAGTGATTTGGAACAATTAAACTACTTAGCTCGAGAGTCTAATTGGTTTGGATGGGGCAGCAGAATTGTCATAACAACAAGAGATAAGCATTTACTAAATGCTCATCAAGTTCGTTCAGTATACGAGGTCAGGATGTTAGATGATGATGCTGCTTTGGAGTTGTTTAGTTTGAATGCATTCAAAAGAAATCAACCTCCAAACAATTACTTGAAACTTGCAAGACTTGCAATATTTTATGCCCAAGGCCTTCCATTAGCTTTGATAGTTTTGGGCTCTCATCTAATTGATAGAAGCATAGAGCAGTGGGAAGTTGCATTAGACAGTTCTAAAAGAGTTCCTCATAAGAAGATACAAGACATTCTTAGAGTTAGTTTTGATGCACTGGAAGATCATCTAAAAACTCTATTTCTTGATATTGCTTGTTTCTTTAATGGTAATACGGTAAACCATGTGATACCCATACTAGAAGCTTGTGATCTCAACCCGGTGATTGGCATTGAACTACTCAAAGAAAAGGCCCTAATAACAATGGATGGATGTAAGATTTGGATGCATGACCTGATAGAAGAAATGGGTAAAGAAATAGTTCATCAAGAACCACCCGATCTACCTGGCGAACGTAGTAGATTATGGATAGGTGAGGACGTGGACCTCGTTCTAACAAATAACACGGGAACAAATAAAATTAAAGGCATCCAAGTATGGTCGGCAACAGATGAGATATGTTTAAATGGCAAAAGCTTTTCAGAGATGAAAAGTCTTAGATATTTTGTGAGCAGCTATGAGGCATCCTATTCTGGAGAAATTGATTATCTTTCCAATGAGTTGAGGTGGATTGATTGGCCTCTATGTCCATTGCAGTCTTTTCCATCCAATTTTTATCCAAAGAAACTTGTTGCGCTGAATATTCCTGATAGTCGCATCACACGATTATGGGAGGGATTTAAGAATTGTCCATTTCTAACACATATGGATTTAAGAGGTTGTGAATCCCTAACAGAACTCCCAAACTTCACCCGAATACCTAATTTAAAAGAGCTGATGTTAGATGGCTGTGAAAGTTTAGTTGAGGTTCATCAGTCCGTTGGATCCCTACATAAGCTTGTGACCTTAAATCTTGTAGGCTGCTCTAACCTTGTTAAGTTGCCAACCGAAATTAGCTTGAAATCTCTCATTACTATGGATCTTGGATATTGCATTAGGCTAGAGGAATTTCCAAAAATTATTGGAAAGATGGATTCTCTAAGAAAGTTGAACCTATCATGGACTAGTGTTAAAGAATTGCATCCGTCAATTGGAAATCTCATTGGGTTATATGAGTTGGATCTACATGGTTGTGGAAATCTTACTACTCTACCATGCAGCATATATGAGTTACAAAATCTAGGGATCCTAGATGTAAGTGGATGCTCAAAACTTGTTACATTTCCAGAAATTAAGGGAAAGATGGATTCATTGACAGAGTTGAATCTAAGAGGCAGTGGCATTATAGAATTGCATCCGTCAATTGGAAATCTCATTGGGCTATATAAGTTGGATCTAGATGGTTGTGAAAATCTTACTACTCTACCATGCAGCATATATGAGTTGCAAAATCTAGAGATTCTAAACGTGAGTGGATGCTCAAACCTTGTTACATTTCCAAAAAAAGCAAGCATTTCACATGATGACAGTAGCTCACTAGCGCTTCCCAGGCTCCGTATACTCAAAATCAACGGATGTAATTTATCAACTGCTGATTTCATTGGGAGTCTTGATTGCTTGGAAACATTAACCGAACTTGATCTCTCAGGAAACAATTTTGTTAATGTTCCTGCACTTGGCAAATTTGTCAAATTGCTAAGGATCGACTTGTATTGTTGCAAGAGACTTCTAGAGATTCCAGAGCTTTCATCAAATATACTCGAGGTAAATGCATGGGATTGCGAATCACTGGAGAGATTTTTGATATTGCCCAAGTCTTTGAATATGCTAGAGATGAACTTGTGGAATTGCCATAGATTTAGTTACAGTCTGGGCTATGACATGGAGAAGATGAAAAATATTTTGCTGAATAATCAGAACAACTCCCCATTAACGCTTGTATTACCCGGTAGTGAGGTGCCGAAGTGGTTCCATATTTCGAAAGAGGTTGCTACTAATGAAAAAGGTCTGGCATTGACATGTGCAATTTCTTTTGAAATCCCAAGCAAATTGAATTGGGAGAACATAGGACTGGCTCTTTGTTCTGTTTTAGTTGAGAAAACTTTTAGTATTTTTACTGATGATCGAGCTGTTATTTCCATCAATGGGGAACTCATAGATCAGAGATCCAATCGGCACAATCCAATGCCAATTGGCCATATGCGTCTGAATTATATTCCATTATCTGATGAAATAAAGGGAAAGGTGGATCAAAAGGGTTGGTCGTGTTATCACTGTCGAGTTCAATTTTACCCTGTTGATCAAATGAAAAGCTGTGGAGTTCACCTCCAATCCAAAGCGAGGCAGAAGCTTGTAGAGCAGGCTTGCTTGTGGCTATTCACCAGAGTTGGAGACGTTGAGGTAGAAAGTGATTGTGCTCAGTTGGTTGCTGTGCTGAATCATCAAGGGGATGATAACTCTGAGGAAAAGTTGCAATCAAGGCGCGGGAAATTTACTATGACAAATGCACCAAAGGTTCTTGGGATTTTGTGGACACAGGAAAGCCTTAAAGATATCCAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1208

Amino Acids

136.23

Weight (kDa)

5.96

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	16 - 180	7.3e-58	TIR domain
TIR_2	PF13676	19 - 116	3.8e-17	TIR domain
NB-ARC	PF00931	203 - 369	1.9e-23	NB-ARC domain
WHD_ROQ1	PF23282	439 - 503	2.7e-16	Disease resistance protein Roq1-like, winged-helix domain
LRR_14	PF23598	619 - 726	2.4e-06	Leucine-rich repeat region
LRR_13	PF23286	694 - 779	3.4e-13	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	715 - 797	4.9e-10	Leucine-rich repeat region
LRR_13	PF23286	766 - 962	1.4e-19	Disease resistance protein RPS4B-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29900 AT4G29900 AT5G57110 AT5G57110 AT5G57110
fragaria_vesca	FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940
malus_domestica	MD13G1241000.v1.1 MD16G1245600.v1.1 MD16G1246100.v1.1
prunus_persica	Prupe.1G072600_v2.0.a1 Prupe.8G012900_v2.0.a1
pyrus_communis	pycom13g21220
rosa_chinensis	RchiOBHm_Chr4g0398891 RchiOBHm_Chr4g0398951
rosa_laevigata	RLG00000009307 RLG00000009309 RLG00000009365
rosa_multiflora	Rmu_sc0004094.1_g000033 Rmu_ssc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343340 Rroxscaffold_5G00343930 Rroxscaffold_5G00344000
rosa_rugosa	Rorug04G0013200
rosa_samantha	Rh4AG091100 Rh4CG093100 Rh4CG099100 Rh4CG099400
rosa_wichuraiana	Rw4G007100 Rw4G007130 Rw4G007500 Rw4G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	3019
AccI	GTMKAC	2 cut(s)	1038, 2620
AccII	CGCG	1 cut(s)	3546
AciI	CCGC	3 cut(s)	377, 698, 3546
AcoI	YGGCCR	1 cut(s)	3256
AcsI	RAATTY	4 cut(s)	404, 2129, 2744, 3551
AfaI	GTAC	1 cut(s)	351
AfeI	AGCGCT	1 cut(s)	2604
AfiI	CCNNNNNNNGG	8 cut(s)	255, 310, 1409, 2213, 2426, 2738, 3207, 3402
AflIII	ACRYGT	1 cut(s)	3080
AhlI	ACTAGT	1 cut(s)	2186
AjiI	CACGTC	1 cut(s)	1564
AjnI	CCWGG	3 cut(s)	75, 1528, 2609
Alw21I	GWGCWC	2 cut(s)	273, 3481
Alw26I	GTCTC	3 cut(s)	791, 2779, 3447
Ama87I	CYCGRG	2 cut(s)	948, 2822
Aor51HI	AGCGCT	1 cut(s)	2604
AoxI	GGCC	6 cut(s)	73, 783, 1162, 1434, 1760, 3256
ApeKI	GCWGC	9 cut(s)	14, 434, 449, 975, 1067, 1695, 2043, 2280, 2493
ApoI	RAATTY	4 cut(s)	404, 2129, 2744, 3551
ArsI	GACNNNNNNTTYG	2 cut(s)	3123, 3155
Asp700I	GAANNNNTTC	3 cut(s)	1094, 1503, 3029
AspLEI	GCGC	3 cut(s)	1819, 2605, 3546
AspS9I	GGNCC	3 cut(s)	784, 1435, 1567
AsuC2I	CCSGG	2 cut(s)	1403, 3009
AsuHPI	GGTGA	7 cut(s)	88, 850, 1417, 1568, 1924, 3377, 3433
AsuII	TTCGAA	2 cut(s)	726, 3041
AvaI	CYCGRG	2 cut(s)	948, 2822
AvaII	GGWCC	1 cut(s)	1567
BalI	TGGCCA	1 cut(s)	3258
BamHI	GGATCC	3 cut(s)	337, 2006, 2307
BanI	GGYRCC	1 cut(s)	3019
BanII	GRGCYC	2 cut(s)	273, 1193
BbsI	GAAGAC	1 cut(s)	220
Bbv12I	GWGCWC	2 cut(s)	273, 3481
BbvI	GCAGC	9 cut(s)	26, 446, 461, 987, 1054, 1707, 2030, 2292, 2505
BccI	CCATC	9 cut(s)	459, 963, 1445, 1795, 1961, 2146, 2359, 2456, 3209
BcgI	CGANNNNNNTGC	2 cut(s)	2813, 2847
BciT130I	CCWGG	3 cut(s)	77, 1530, 2611
BciVI	GTATCC	1 cut(s)	73
BclI	TGATCA	3 cut(s)	37, 394, 3361
BcnI	CCSGG	2 cut(s)	1403, 3009
BcoDI	GTCTC	3 cut(s)	791, 2779, 3447
BcuI	ACTAGT	1 cut(s)	2186
BfoI	RGCGCY	1 cut(s)	2606
BfuI	GTATCC	1 cut(s)	73
BglII	AGATCT	2 cut(s)	213, 811
BisI	GCNGC	9 cut(s)	15, 435, 450, 976, 1068, 1696, 2044, 2281, 2494
BlsI	GCNGC	9 cut(s)	16, 436, 451, 977, 1069, 1697, 2045, 2282, 2495
Bme1390I	CCNGG	5 cut(s)	77, 1403, 1530, 2611, 3009
Bme18I	GGWCC	1 cut(s)	1567
BmeT110I	CYCGRG	2 cut(s)	948, 2822
BmgBI	CACGTC	1 cut(s)	1564
BmgT120I	GGNCC	3 cut(s)	784, 1435, 1567
BmiI	GGNNCC	6 cut(s)	339, 2008, 2309, 2615, 3021, 3032
BmrFI	CCNGG	5 cut(s)	77, 1403, 1530, 2611, 3009
BpiI	GAAGAC	1 cut(s)	220
BplI	GAGNNNNNCTC	4 cut(s)	421, 453, 3372, 3404
BpmI	CTGGAG	2 cut(s)	1737, 2873
Bpu10I	CCTNAGC	3 cut(s)	419, 693, 2759
Bpu14I	TTCGAA	2 cut(s)	726, 3041
BpuEI	CTTGAG	1 cut(s)	235
BpuMI	CCSGG	2 cut(s)	1403, 3009
BsaBI	GATNNNNATC	2 cut(s)	218, 760
BsaJI	CCNNGG	3 cut(s)	342, 1159, 2609
BsaXI	ACNNNNNCTCC	2 cut(s)	849, 879
Bsc4I	CCNNNNNNNGG	8 cut(s)	255, 310, 1409, 2213, 2426, 2738, 3207, 3402
Bse1I	ACTGG	7 cut(s)	99, 575, 670, 1305, 2856, 3138, 3619
Bse3DI	GCAATG	1 cut(s)	1772
Bse8I	GATNNNNATC	2 cut(s)	218, 760
BseBI	CCWGG	3 cut(s)	77, 1530, 2611
BseDI	CCNNGG	3 cut(s)	342, 1159, 2609
BseJI	GATNNNNATC	2 cut(s)	218, 760
BseLI	CCNNNNNNNGG	8 cut(s)	255, 310, 1409, 2213, 2426, 2738, 3207, 3402
BseMI	GCAATG	1 cut(s)	1772
BseMII	CTCAG	5 cut(s)	53, 410, 2721, 3494, 3513
BseNI	ACTGG	7 cut(s)	99, 575, 670, 1305, 2856, 3138, 3619
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	9 cut(s)	26, 446, 461, 987, 1054, 1707, 2030, 2292, 2505
BsgI	GTGCAG	1 cut(s)	2718
Bsh1236I	CGCG	1 cut(s)	3546
BshFI	GGCC	6 cut(s)	75, 785, 1164, 1436, 1762, 3258
BshNI	GGYRCC	1 cut(s)	3019
BsiHKAI	GWGCWC	2 cut(s)	273, 3481
BsiHKCI	CYCGRG	2 cut(s)	948, 2822
BsiSI	CCGG	2 cut(s)	1403, 3009
BslFI	GGGAC	1 cut(s)	676
BslI	CCNNNNNNNGG	8 cut(s)	255, 310, 1409, 2213, 2426, 2738, 3207, 3402
BsmAI	GTCTC	3 cut(s)	791, 2779, 3447
BsmBI	CGTCTC	1 cut(s)	3447
BsmFI	GGGAC	1 cut(s)	676
BsmI	GAATGC	2 cut(s)	1094, 1096
BsnI	GGCC	6 cut(s)	75, 785, 1164, 1436, 1762, 3258
BsoBI	CYCGRG	2 cut(s)	948, 2822
Bsp119I	TTCGAA	2 cut(s)	726, 3041
Bsp1286I	GDGCHC	3 cut(s)	273, 1193, 3481
BspACI	CCGC	3 cut(s)	377, 698, 3546
BspANI	GGCC	6 cut(s)	75, 785, 1164, 1436, 1762, 3258
BspCNI	CTCAG	5 cut(s)	54, 411, 2720, 3493, 3514
BspFNI	CGCG	1 cut(s)	3546
BspLI	GGNNCC	6 cut(s)	339, 2008, 2309, 2615, 3021, 3032
BspT104I	TTCGAA	2 cut(s)	726, 3041
BspT107I	GGYRCC	1 cut(s)	3019
BsrDI	GCAATG	1 cut(s)	1772
BsrI	ACTGG	7 cut(s)	99, 575, 670, 1305, 2856, 3138, 3619
BssECI	CCNNGG	3 cut(s)	342, 1159, 2609
BssNAI	GTATAC	2 cut(s)	1039, 2621
BssT1I	CCWWGG	1 cut(s)	1159
Bst1107I	GTATAC	2 cut(s)	1039, 2621
Bst2UI	CCWGG	3 cut(s)	77, 1530, 2611
Bst4CI	ACNGT	7 cut(s)	313, 545, 1241, 1360, 2591, 2930, 3338
Bst6I	CTCTTC	1 cut(s)	807
BstAPI	GCANNNNNTGC	1 cut(s)	1142
BstBI	TTCGAA	2 cut(s)	726, 3041
BstC8I	GCNNGC	4 cut(s)	882, 2572, 3423, 3427
BstFNI	CGCG	1 cut(s)	3546
BstH2I	RGCGCY	1 cut(s)	2606
BstHHI	GCGC	3 cut(s)	1819, 2605, 3546
BstMAI	GTCTC	3 cut(s)	791, 2779, 3447
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 374, 383, 1142, 2611, 3418, 3541
BstNI	CCWGG	3 cut(s)	77, 1530, 2611
BstNSI	RCATGY	1 cut(s)	3084
BstSCI	CCNGG	5 cut(s)	75, 1401, 1528, 2609, 3007
BstUI	CGCG	1 cut(s)	3546
BstV1I	GCAGC	9 cut(s)	26, 446, 461, 987, 1054, 1707, 2030, 2292, 2505
BstV2I	GAAGAC	1 cut(s)	220
BstZ17I	GTATAC	2 cut(s)	1039, 2621
BsuI	GTATCC	1 cut(s)	73
BsuRI	GGCC	6 cut(s)	75, 785, 1164, 1436, 1762, 3258
BtrI	CACGTC	1 cut(s)	1564
BtsI	GCAGTG	2 cut(s)	1226, 2404
BtsIMutI	CAGTG	5 cut(s)	1226, 1298, 2404, 2849, 3334
Cac8I	GCNNGC	4 cut(s)	882, 2572, 3423, 3427
CfoI	GCGC	3 cut(s)	1819, 2605, 3546
Cfr13I	GGNCC	3 cut(s)	784, 1435, 1567
CseI	GACGC	1 cut(s)	3254
Csp6I	GTAC	1 cut(s)	350
CviQI	GTAC	1 cut(s)	350
DraI	TTTAAA	3 cut(s)	618, 1647, 1950
EaeI	YGGCCR	1 cut(s)	3256
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
Ecl136II	GAGCTC	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	1159
Eco147I	AGGCCT	1 cut(s)	1164
Eco24I	GRGCYC	2 cut(s)	273, 1193
Eco32I	GATATC	1 cut(s)	3616
Eco47I	GGWCC	1 cut(s)	1567
Eco47III	AGCGCT	1 cut(s)	2604
Eco53kI	GAGCTC	1 cut(s)	271
Eco88I	CYCGRG	2 cut(s)	948, 2822
EcoICRI	GAGCTC	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	1435
EcoRII	CCWGG	3 cut(s)	75, 1528, 2609
EcoRV	GATATC	1 cut(s)	3616
EcoT14I	CCWWGG	1 cut(s)	1159
EcoT22I	ATGCAT	3 cut(s)	1096, 1473, 2836
EcoT38I	GRGCYC	2 cut(s)	273, 1193
ErhI	CCWWGG	1 cut(s)	1159
Esp3I	CGTCTC	1 cut(s)	3447
FalI	AAGNNNNNCTT	4 cut(s)	786, 818, 1263, 1295
FaqI	GGGAC	1 cut(s)	676
FauI	CCCGC	2 cut(s)	370, 3539
FauNDI	CATATG	3 cut(s)	550, 1887, 3261
FbaI	TGATCA	3 cut(s)	37, 394, 3361
FblI	GTMKAC	2 cut(s)	1038, 2620
Fnu4HI	GCNGC	9 cut(s)	15, 435, 450, 976, 1068, 1696, 2044, 2281, 2494
FriOI	GRGCYC	2 cut(s)	273, 1193
Fsp4HI	GCNGC	9 cut(s)	15, 435, 450, 976, 1068, 1696, 2044, 2281, 2494
GlaI	GCGC	3 cut(s)	1818, 2604, 3545
GluI	GCNGC	9 cut(s)	15, 435, 450, 976, 1068, 1696, 2044, 2281, 2494
GsuI	CTGGAG	2 cut(s)	1737, 2873
HaeII	RGCGCY	1 cut(s)	2606
HaeIII	GGCC	6 cut(s)	75, 785, 1164, 1436, 1762, 3258
HapII	CCGG	2 cut(s)	1403, 3009
HgaI	GACGC	1 cut(s)	3254
HhaI	GCGC	3 cut(s)	1819, 2605, 3546
Hin6I	GCGC	3 cut(s)	1817, 2603, 3544
HinP1I	GCGC	3 cut(s)	1817, 2603, 3544
HindIII	AAGCTT	5 cut(s)	611, 1386, 1657, 2018, 3410
HpaII	CCGG	2 cut(s)	1403, 3009
HphI	GGTGA	7 cut(s)	88, 850, 1417, 1568, 1924, 3377, 3433
Hpy166II	GTNNAC	6 cut(s)	1039, 1363, 1567, 2621, 3385, 3594
Hpy8I	GTNNAC	6 cut(s)	1039, 1363, 1567, 2621, 3385, 3594
HpyAV	CCTTC	7 cut(s)	121, 151, 293, 770, 829, 870, 1175
HpyCH4III	ACNGT	7 cut(s)	313, 545, 1241, 1360, 2591, 2930, 3338
HpyCH4IV	ACGT	4 cut(s)	1537, 1563, 2529, 3456
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 374, 383, 1142, 2611, 3418, 3541
HpySE526I	ACGT	4 cut(s)	1537, 1563, 2529, 3456
HspAI	GCGC	3 cut(s)	1817, 2603, 3544
Ksp22I	TGATCA	3 cut(s)	37, 394, 3361
LmnI	GCTCC	1 cut(s)	2619
Lsp1109I	GCAGC	9 cut(s)	26, 446, 461, 987, 1054, 1707, 2030, 2292, 2505
MaeII	ACGT	4 cut(s)	1537, 1563, 2529, 3456
MaeIII	GTNAC	5 cut(s)	2023, 2292, 2338, 2551, 2924
MfeI	CAATTG	6 cut(s)	198, 687, 788, 2211, 2424, 3252
MhlI	GDGCHC	3 cut(s)	273, 1193, 3481
MlsI	TGGCCA	1 cut(s)	3258
MluNI	TGGCCA	1 cut(s)	3258
MlyI	GAGTC	6 cut(s)	200, 500, 596, 793, 962, 2677
MmeI	TCCRAC	5 cut(s)	559, 1984, 2220, 2433, 3430
Mox20I	TGGCCA	1 cut(s)	3258
Mph1103I	ATGCAT	3 cut(s)	1096, 1473, 2836
MroXI	GAANNNNTTC	3 cut(s)	1094, 1503, 3029
MscI	TGGCCA	1 cut(s)	3258
MslI	CAYNNNNRTG	4 cut(s)	1849, 2096, 2253, 3079
Msp20I	TGGCCA	1 cut(s)	3258
MspI	CCGG	2 cut(s)	1403, 3009
MspR9I	CCNGG	5 cut(s)	77, 1403, 1530, 2611, 3009
MunI	CAATTG	6 cut(s)	198, 687, 788, 2211, 2424, 3252
Mva1269I	GAATGC	2 cut(s)	1094, 1096
MvaI	CCWGG	3 cut(s)	77, 1530, 2611
MvnI	CGCG	1 cut(s)	3546
MwoI	GCNNNNNNNGC	7 cut(s)	11, 374, 383, 1142, 2611, 3418, 3541
NciI	CCSGG	2 cut(s)	1403, 3009
NdeI	CATATG	3 cut(s)	550, 1887, 3261
NlaIV	GGNNCC	6 cut(s)	339, 2008, 2309, 2615, 3021, 3032
NmuCI	GTSAC	1 cut(s)	2023
NsiI	ATGCAT	3 cut(s)	1096, 1473, 2836
NspI	RCATGY	1 cut(s)	3084
NspV	TTCGAA	2 cut(s)	726, 3041
PaeR7I	CTCGAG	2 cut(s)	948, 2822
PceI	AGGCCT	1 cut(s)	1164
PciI	ACATGT	1 cut(s)	3080
PcsI	WCGNNNNNNNCGW	2 cut(s)	1569, 1843
PctI	GAATGC	2 cut(s)	1094, 1096
PdmI	GAANNNNTTC	3 cut(s)	1094, 1503, 3029
PkrI	GCNGC	9 cut(s)	16, 436, 451, 977, 1069, 1697, 2045, 2282, 2495
PleI	GAGTC	6 cut(s)	200, 499, 595, 793, 961, 2676
PpsI	GAGTC	6 cut(s)	200, 499, 595, 793, 961, 2676
PscI	ACATGT	1 cut(s)	3080
Psp124BI	GAGCTC	1 cut(s)	273
Psp6I	CCWGG	3 cut(s)	75, 1528, 2609
PspGI	CCWGG	3 cut(s)	75, 1528, 2609
PspN4I	GGNNCC	6 cut(s)	339, 2008, 2309, 2615, 3021, 3032
PspPI	GGNCC	3 cut(s)	784, 1435, 1567
PspXI	VCTCGAGB	1 cut(s)	2822
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	4 cut(s)	1849, 2096, 2253, 3079
SacI	GAGCTC	1 cut(s)	273
SatI	GCNGC	9 cut(s)	15, 435, 450, 976, 1068, 1696, 2044, 2281, 2494
Sau96I	GGNCC	3 cut(s)	784, 1435, 1567
SchI	GAGTC	6 cut(s)	200, 500, 596, 793, 962, 2677
ScrFI	CCNGG	5 cut(s)	77, 1403, 1530, 2611, 3009
SduI	GDGCHC	3 cut(s)	273, 1193, 3481
Sfr274I	CTCGAG	2 cut(s)	948, 2822
SfuI	TTCGAA	2 cut(s)	726, 3041
SinI	GGWCC	1 cut(s)	1567
SlaI	CTCGAG	2 cut(s)	948, 2822
SmiMI	CAYNNNNRTG	4 cut(s)	1849, 2096, 2253, 3079
SmlI	CTYRAG	3 cut(s)	250, 948, 2822
SmoI	CTYRAG	3 cut(s)	250, 948, 2822
SpeI	ACTAGT	1 cut(s)	2186
SseBI	AGGCCT	1 cut(s)	1164
SsiI	CCGC	3 cut(s)	377, 698, 3546
SspI	AATATT	4 cut(s)	637, 1149, 1825, 2962
SstI	GAGCTC	1 cut(s)	273
StuI	AGGCCT	1 cut(s)	1164
StyD4I	CCNGG	5 cut(s)	75, 1401, 1528, 2609, 3007
StyI	CCWWGG	1 cut(s)	1159
TaaI	ACNGT	7 cut(s)	313, 545, 1241, 1360, 2591, 2930, 3338
TaiI	ACGT	4 cut(s)	1540, 1566, 2532, 3459
TaqI	TCGA	8 cut(s)	624, 726, 949, 2766, 2823, 3041, 3187, 3340
TscAI	CASTG	5 cut(s)	1226, 1305, 2404, 2856, 3341
TseFI	GTSAC	1 cut(s)	2023
TseI	GCWGC	9 cut(s)	14, 434, 449, 975, 1067, 1695, 2043, 2280, 2493
Tsp45I	GTSAC	1 cut(s)	2023
TspGWI	ACGGA	5 cut(s)	1990, 2196, 2409, 2606, 2649
TspRI	CASTG	5 cut(s)	1226, 1305, 2404, 2856, 3341
VpaK11BI	GGWCC	1 cut(s)	1567
XapI	RAATTY	4 cut(s)	404, 2129, 2744, 3551
XbaI	TCTAGA	3 cut(s)	2458, 2515, 2791
XceI	RCATGY	1 cut(s)	3084
XhoI	CTCGAG	2 cut(s)	948, 2822
XmiI	GTMKAC	2 cut(s)	1038, 2620
XmnI	GAANNNNTTC	3 cut(s)	1094, 1503, 3029
Zsp2I	ATGCAT	3 cut(s)	1096, 1473, 2836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.