Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003103

Physical Location & Seq

Genomic Coordinates Reverse (-)

15919287 .. 15930831

Gene Structure 11545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G007500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3321 bp

ATGAGTCAATCAACGGGCTCGCCGAACCAGAAAAACTATGATGAGGAAGCCGGAACCAACCGTTCCGGCGACGACGAGGACTGCTCGAGTGTTTTTGAGATTGCCAGAACTAAGAATGCTTCCGTCGAGCGTCTCCGCCGTTGGAGGCAAGCGGCACTTGTGCTAAATGCTTCTCGTCGATTCCGGTATACCTTAGACTTGAAAAAGGAGGAAGAAAAAAAGAAGACGTTAAGCAAGATTAGAGCACATGCAGAAGTCATACGAGCTGCATTTATTTTCCAGAAATCCATAACACAGGAAAATGGAAATGTGCCACCAAAACCAAGTTCTGCTGGTGAATTTCCAATTGGACAAGAAGAACTAGCTTCAATTTCAAGGGATCATAATTTTACTACTCTGCAGCAATATGGGGGGGTCAAAGGCCTCGGAGAATTATTGAAAACAAGTTTAGAAAAGGGAATTCCTGGAAGTGATGATGATTTACTGAAACGAAAAACTGCATATGGATCCAACACATATCCCCGGAAAAAACCAAGGAGTTTCTGGAGATTTCTCTGGGAAGCTTGCCAAGATCTTACTCTTATCATTTTGATGGTAGCTGCTGTGGCTTCTTTAGCGCTGGGTATAAAAACAGAGGGTATAAAGGAGGGATGGTATGATGGGGGCAGCATTGCTTTTGCAGTTCTCCTAGTCATTGTTGTGACAGCCATTAGTGACTACAAACAATCTCTGCAGTTCCAGAATCTAAATGAGGAAAAGAGAAATATACAAATTGAGGTTGTCAGAGGTGGTAGACGTGTTGAGGTTTCAATTTATGATCTTGTTGTAGGTGATGTTATACCCCTTAACATTGGTGATCAGGTTCCTGCTGATGGGGTTTTAATCATTGGTCATTCACTTTCAATTGATGAGTCTAGCATGACTGGCGAGTCCAAGATTGTTCGCAAGGACTCCAAAGAACCATTTCTAATGTCCGGCTGCAAAGTAGCAGATGGAAATGGTATAATGCTGGTAACCAGTGTTGGCATTAATACTGAATGGGGATTACTCATGGCTAGCATCTCGGAAGACACTGGTGAAGAAACACCCTTGCAGGTGCGCTTGAATGGGGTTGCTACCTTCATTGGTATTGTGGGGCTCACAGTAGCTGTCCTCGTCTTATGTGTCCTTTTGGTCAGATACTTTACTGGCCATACAACAAATGCAGATGGAACTCGTCAGTTTGTTGCCGGAAAGACAAAATTTGGGAAAGCTATAGATGGAGCCATCAAAATTGTCACTATTGCAGTCACCATTGTAGTGGTTGCTGTTCCTGAAGGCCTCCCCTTGGCTGTTACCTTAACACTTGCGTACTCAATGAGAAAAATGATGGCAGATAAGGCCTTGGTACGTAGGCTTTCTGCATGTGAAACAATGGGCTCGGCCACTACTATATGCAGTGATAAGACTGGTACCTTAACTTTGAACCAGATGACTGTGGTCGAGTCTTGTGCATGTTTGAAGAAAGTCAATAACTCTGATGGCAAGCCAGACTTGTCGCCAAAAATATCGTCTTTGATTATTGAAGGCATAGCTCAGAATACAACTGGCAATGTTTATGTGCCTGAGACTGGTGGTGACGTAGAGGTTACTGGATCACCAACAGAGAAGGCAATTCTGCAGTGGGCACTCAAGCTTGGGATGAATTTTAAAGCCACCAGGTCTCAGTCTTCAATTCTTCATGTGTTCCCATTCAACTCTGAGAAAAAACGAGGCGGTGTAGCAGTTAAATTGCCAAACAATGAAGTTCATATACACTGGAAAGGGGCTGCTGAAATAATCTTGGCCTCATGCACAAGATACATTGACGACAATGATCAGGTGGCAGCAATGGACGACGACAAGATTATGTTTTTCAGGAAATCTATTGAGGATATGGCTGGTCGTAGTTTGCGTTGTGTTGCTATAGCATATTTACCATATGAATTGGAAAATGTTCCAACTGGTGAACAACAATTAGCTGATTGGGCAATGCCTGCAGATGACCTTGTTTTACTTGCTATTGTTGGTATAAAGGATCCTTGTCGACCAGGAGTTGCAGATGCAGTGAGACTATGCCAAAAGGCTGGCGTTAAGGTACGCATGGTTACTGGAGACAATGTTCAGACTGCAAAGGCAATAGCATTGGAATGTGGTATACTGCGTACGGATTCAGATCTTAGGGAGCATCTAATTGAAGGGAAAGACTTCCGTGAGCTTTCTGATAGGGAGAGAGAAGAGGTTGCTGAGAAAATCTCGGTAATGGGACGATCCTCTCCTAATGATAAGCTTCTGCTTGTGCAAGCGCTAAGGAGAAGGGGACATGTTGTTGCTGTTACTGGAGATGGCACTAATGATGCTCCTGCACTACATGAGGCCGACATTGGTCTTGCTATGGGTATTCAAGGTACTGAGGTTGCCAAAGAGAGTTCTGATATCATTATCCTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGACGTTCTGTATATGCAAATATTCAGAAATTCATCCAATTCCAACTCACTGTCAATGTTGCTGCACTTGTTATCAATGTGGTGGCAGCAATTTCCTCTGGTGAAGTACCACTAAATGCTGTTCAGCTTCTGTGGGTGAATCTTATAATGGATACTCTTGGAGCACTAGCATTGGCTACTGAGCCTCCTACGAATCATCTGATGGACAGACCTCCTGTTGGTCGAAGGGAACCACTGATAACTAATATAATGTGGAGGAACTTATTGATTCAGGCTATCTACCAAATTACGGTCCTCCTTATCTTCAATTTCCGAGGGAAAAGTATTCTCAAGCTGGAACGTGATTCTACTGACCATGCGGACAAAGTGAAGAACACACTTATATTCAATACCTTTGTCCTCTGTCAAATTTTCAATGAATTCAATGCCAGGAAGCCAGATGAATTCAACATATTCAAAGGAATTACCAAAAATTATCTCTTTATGGGAATAATTGCAGTGACACTTGTACTTCAGATTCTCATTGTCGAGTTTCTGGGGAAGTTTACTACAACAGTCCGGCTTAACTGGAAGCATTGGTTGATTTCTGTTGTTATCGCTTTTATCAGTTGGCCTCTTGCTGTTGTTGGGAAGCTTATTCCGGTACCCGAAACTCCTTTCCACAGATATTTCACTAGGAGTCCTCTCTTTAAGTTTATAACCCGAATATTCCGTCGGCGAAGAGAGAGAACAGAGTTTGTGGTTTCTCAGGTAACCAACCAGTTATGCATTAGGCGTATAATGAGATTGAAATCGGCAATGCTCGACGAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1106

Amino Acids

122.18

Weight (kDa)

8.7

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	32 - 72	5.9e-17	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	136 - 204	4.5e-14	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	258 - 353	7.5e-20	P-type ATPase actuator domain
Cation_ATPase	PF13246	519 - 690	2.4e-31	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	677 - 800	3.9e-14	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	871 - 1047	7.8e-45	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29900 AT4G29900 AT5G57110 AT5G57110 AT5G57110
fragaria_vesca	FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940
malus_domestica	MD13G1241000.v1.1 MD16G1245600.v1.1 MD16G1246100.v1.1
prunus_persica	Prupe.1G072600_v2.0.a1 Prupe.8G012900_v2.0.a1
pyrus_communis	pycom13g21220
rosa_chinensis	RchiOBHm_Chr4g0398891 RchiOBHm_Chr4g0398951
rosa_laevigata	RLG00000009307 RLG00000009309 RLG00000009365
rosa_multiflora	Rmu_sc0004094.1_g000033 Rmu_ssc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343340 Rroxscaffold_5G00343930 Rroxscaffold_5G00344000
rosa_rugosa	Rorug04G0013200
rosa_samantha	Rh4AG091100 Rh4CG093100 Rh4CG099100 Rh4CG099400
rosa_wichuraiana	Rw4G007100 Rw4G007130 Rw4G007500 Rw4G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2651, 3203
AarI	CACCTGC	1 cut(s)	1084
AasI	GACNNNNNNGTC	1 cut(s)	928
Acc36I	ACCTGC	1 cut(s)	1084
Acc65I	GGTACC	2 cut(s)	1451, 3148
AccB1I	GGYRCC	2 cut(s)	1451, 3148
AccI	GTMKAC	4 cut(s)	188, 793, 2065, 2176
AciI	CCGC	4 cut(s)	136, 152, 1755, 2864
AclWI	GGATC	7 cut(s)	387, 501, 514, 1642, 2051, 2064, 2283
AcoI	YGGCCR	2 cut(s)	1189, 1422
AcsI	RAATTY	8 cut(s)	338, 459, 1241, 1684, 2534, 2913, 2924, 2948
AcuI	CTGAAG	3 cut(s)	1335, 2466, 3002
AfaI	GTAC	9 cut(s)	1352, 1389, 1453, 2118, 2185, 2428, 2613, 3015, 3150
AfeI	AGCGCT	2 cut(s)	618, 2325
AfiI	CCNNNNNNNGG	5 cut(s)	872, 1327, 1610, 2723, 2794
AflIII	ACRYGT	2 cut(s)	796, 2341
AjiI	CACGTC	1 cut(s)	797
AjnI	CCWGG	5 cut(s)	463, 1697, 2068, 2463, 2933
AjuI	GAANNNNNNNTTGG	4 cut(s)	310, 330, 342, 362
AloI	GAACNNNNNNTCC	2 cut(s)	2124, 2156
Alw21I	GWGCWC	2 cut(s)	247, 2671
Alw26I	GTCTC	5 cut(s)	137, 1601, 1707, 2083, 2127
AlwI	GGATC	7 cut(s)	387, 501, 514, 1642, 2051, 2064, 2283
AlwNI	CAGNNNCTG	2 cut(s)	1148, 2635
Ama87I	CYCGRG	1 cut(s)	85
Aor51HI	AGCGCT	2 cut(s)	618, 2325
AoxI	GGCC	8 cut(s)	421, 1189, 1318, 1380, 1422, 1824, 2394, 3116
ApeKI	GCWGC	9 cut(s)	266, 400, 599, 666, 978, 1808, 1865, 2567, 2591
ApoI	RAATTY	8 cut(s)	338, 459, 1241, 1684, 2534, 2913, 2924, 2948
ArsI	GACNNNNNNTTYG	4 cut(s)	1535, 1567, 3202, 3234
AseI	ATTAAT	1 cut(s)	1029
Asp700I	GAANNNNTTC	3 cut(s)	963, 1974, 2225
Asp718I	GGTACC	2 cut(s)	1451, 3148
AspLEI	GCGC	3 cut(s)	619, 1101, 2326
AspS9I	GGNCC	1 cut(s)	2797
AsuC2I	CCSGG	1 cut(s)	523
AsuNHI	GCTAGC	1 cut(s)	1055
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	2797
BaeGI	GKGCMC	1 cut(s)	1669
BaeI	ACNNNNGTAYC	2 cut(s)	2418, 2451
BalI	TGGCCA	1 cut(s)	1191
BamHI	GGATCC	2 cut(s)	506, 2056
BanI	GGYRCC	2 cut(s)	1451, 3148
BanII	GRGCYC	3 cut(s)	20, 1140, 1421
BarI	GAAGNNNNNNTAC	2 cut(s)	1776, 1808
BbsI	GAAGAC	3 cut(s)	230, 1074, 1701
Bbv12I	GWGCWC	2 cut(s)	247, 2671
BbvI	GCAGC	9 cut(s)	253, 412, 586, 678, 965, 1795, 1877, 2554, 2603
BceAI	ACGGC	1 cut(s)	123
BcgI	CGANNNNNNTGC	2 cut(s)	1472, 1506
BciT130I	CCWGG	5 cut(s)	465, 1699, 2070, 2465, 2935
BciVI	GTATCC	1 cut(s)	2650
BclI	TGATCA	2 cut(s)	856, 1855
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	5 cut(s)	137, 1601, 1707, 2083, 2127
BfaI	CTAG	6 cut(s)	362, 689, 915, 1056, 2672, 3180
BfmI	CTRYAG	6 cut(s)	398, 731, 1254, 1658, 1944, 2016
BfoI	RGCGCY	2 cut(s)	620, 2327
BfuAI	ACCTGC	1 cut(s)	1084
BfuI	GTATCC	1 cut(s)	2650
BglII	AGATCT	2 cut(s)	571, 2194
Bme1390I	CCNGG	6 cut(s)	465, 523, 1699, 2070, 2465, 2935
Bme18I	GGWCC	1 cut(s)	2797
BmeT110I	CYCGRG	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	797
BmgT120I	GGNCC	1 cut(s)	2797
BmiI	GGNNCC	8 cut(s)	55, 508, 864, 1264, 1453, 2058, 2736, 3150
BmrFI	CCNGG	6 cut(s)	465, 523, 1699, 2070, 2465, 2935
BmsI	GCATC	4 cut(s)	1068, 2071, 2215, 2365
BmtI	GCTAGC	1 cut(s)	1059
BoxI	GACNNNNGTC	2 cut(s)	1478, 2403
BpiI	GAAGAC	3 cut(s)	230, 1074, 1701
BplI	GAGNNNNNCTC	4 cut(s)	68, 100, 2258, 2290
BpmI	CTGGAG	3 cut(s)	565, 2151, 2379
Bpu10I	CCTNAGC	1 cut(s)	2327
BpuEI	CTTGAG	2 cut(s)	1655, 2819
BpuMI	CCSGG	1 cut(s)	523
BsaAI	YACGTR	1 cut(s)	1391
BsaBI	GATNNNNATC	2 cut(s)	2193, 3295
BsaI	GGTCTC	1 cut(s)	1707
BsaJI	CCNNGG	6 cut(s)	424, 521, 533, 1326, 1383, 2818
BsaWI	WCCGGW	2 cut(s)	183, 3145
BsaXI	ACNNNNNCTCC	6 cut(s)	638, 668, 2124, 2154, 2674, 2704
Bsc4I	CCNNNNNNNGG	5 cut(s)	872, 1327, 1610, 2723, 2794
Bse3DI	GCAATG	5 cut(s)	669, 1597, 1875, 2016, 3309
Bse8I	GATNNNNATC	2 cut(s)	2193, 3295
BseBI	CCWGG	5 cut(s)	465, 1699, 2070, 2465, 2935
BseDI	CCNNGG	6 cut(s)	424, 521, 533, 1326, 1383, 2818
BseGI	GGATG	4 cut(s)	656, 1686, 2473, 2538
BseJI	GATNNNNATC	2 cut(s)	2193, 3295
BseLI	CCNNNNNNNGG	5 cut(s)	872, 1327, 1610, 2723, 2794
BseMI	GCAATG	5 cut(s)	669, 1597, 1875, 2016, 3309
BseMII	CTCAG	8 cut(s)	1589, 1596, 1718, 1731, 2256, 2421, 2676, 3266
BseSI	GKGCMC	1 cut(s)	1669
BseXI	GCAGC	9 cut(s)	253, 412, 586, 678, 965, 1795, 1877, 2554, 2603
BseYI	CCCAGC	1 cut(s)	619
BsgI	GTGCAG	2 cut(s)	2367, 2553
BshFI	GGCC	8 cut(s)	423, 1191, 1320, 1382, 1424, 1826, 2396, 3118
BshNI	GGYRCC	2 cut(s)	1451, 3148
BsiHKAI	GWGCWC	2 cut(s)	247, 2671
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	8 cut(s)	51, 66, 184, 523, 975, 1230, 3064, 3146
BsiWI	CGTACG	1 cut(s)	2183
BslFI	GGGAC	3 cut(s)	2298, 2352, 2520
BslI	CCNNNNNNNGG	5 cut(s)	872, 1327, 1610, 2723, 2794
BsmAI	GTCTC	5 cut(s)	137, 1601, 1707, 2083, 2127
BsmBI	CGTCTC	1 cut(s)	137
BsmFI	GGGAC	3 cut(s)	2298, 2352, 2520
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	8 cut(s)	423, 1191, 1320, 1382, 1424, 1826, 2396, 3118
Bso31I	GGTCTC	1 cut(s)	1707
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	6 cut(s)	20, 247, 1140, 1421, 1669, 2671
BspACI	CCGC	4 cut(s)	136, 152, 1755, 2864
BspANI	GGCC	8 cut(s)	423, 1191, 1320, 1382, 1424, 1826, 2396, 3118
BspCNI	CTCAG	8 cut(s)	1588, 1597, 1717, 1732, 2257, 2422, 2677, 3265
BspLI	GGNNCC	8 cut(s)	55, 508, 864, 1264, 1453, 2058, 2736, 3150
BspMAI	CTGCAG	4 cut(s)	402, 735, 1662, 2020
BspMI	ACCTGC	1 cut(s)	1084
BspOI	GCTAGC	1 cut(s)	1059
BspPI	GGATC	7 cut(s)	387, 501, 514, 1642, 2051, 2064, 2283
BspT107I	GGYRCC	2 cut(s)	1451, 3148
BspTNI	GGTCTC	1 cut(s)	1707
BsrDI	GCAATG	5 cut(s)	669, 1597, 1875, 2016, 3309
BssECI	CCNNGG	6 cut(s)	424, 521, 533, 1326, 1383, 2818
BssNAI	GTATAC	2 cut(s)	189, 2177
BssT1I	CCWWGG	3 cut(s)	533, 1326, 1383
Bst1107I	GTATAC	2 cut(s)	189, 2177
Bst2UI	CCWGG	5 cut(s)	465, 1699, 2070, 2465, 2935
Bst4CI	ACNGT	6 cut(s)	62, 1144, 1477, 2557, 2797, 3061
Bst6I	CTCTTC	2 cut(s)	2250, 3220
BstAPI	GCANNNNNTGC	1 cut(s)	2015
BstBAI	YACGTR	1 cut(s)	1391
BstC8I	GCNNGC	8 cut(s)	20, 150, 565, 1057, 1526, 2016, 2107, 2322
BstEII	GGTNACC	2 cut(s)	1012, 3256
BstF5I	GGATG	4 cut(s)	656, 1686, 2473, 2538
BstH2I	RGCGCY	2 cut(s)	620, 2327
BstHHI	GCGC	3 cut(s)	619, 1101, 2326
BstMAI	GTCTC	5 cut(s)	137, 1601, 1707, 2083, 2127
BstMWI	GCNNNNNNNGC	6 cut(s)	605, 614, 924, 1379, 2006, 2015
BstNI	CCWGG	5 cut(s)	465, 1699, 2070, 2465, 2935
BstNSI	RCATGY	4 cut(s)	251, 1407, 1497, 2345
BstPAI	GACNNNNGTC	2 cut(s)	1478, 2403
BstPI	GGTNACC	2 cut(s)	1012, 3256
BstSCI	CCNGG	6 cut(s)	463, 521, 1697, 2068, 2463, 2933
BstSFI	CTRYAG	6 cut(s)	398, 731, 1254, 1658, 1944, 2016
BstSLI	GKGCMC	1 cut(s)	1669
BstSNI	TACGTA	1 cut(s)	1391
BstV1I	GCAGC	9 cut(s)	253, 412, 586, 678, 965, 1795, 1877, 2554, 2603
BstV2I	GAAGAC	3 cut(s)	230, 1074, 1701
BstX2I	RGATCY	4 cut(s)	506, 571, 2056, 2194
BstXI	CCANNNNNNTGG	2 cut(s)	1300, 2105
BstYI	RGATCY	4 cut(s)	506, 571, 2056, 2194
BstZ17I	GTATAC	2 cut(s)	189, 2177
BsuI	GTATCC	1 cut(s)	2650
BsuRI	GGCC	8 cut(s)	423, 1191, 1320, 1382, 1424, 1826, 2396, 3118
BtrI	CACGTC	1 cut(s)	797
BtsCI	GGATG	4 cut(s)	656, 1686, 2473, 2538
BtsI	GCAGTG	4 cut(s)	1444, 1667, 2091, 3009
BtsIMutI	CAGTG	9 cut(s)	1024, 1071, 1444, 1667, 1795, 2091, 2553, 2738, 3009
BveI	ACCTGC	1 cut(s)	1084
Cac8I	GCNNGC	8 cut(s)	20, 150, 565, 1057, 1526, 2016, 2107, 2322
CaiI	CAGNNNCTG	2 cut(s)	1148, 2635
CfoI	GCGC	3 cut(s)	619, 1101, 2326
Cfr13I	GGNCC	1 cut(s)	2797
CseI	GACGC	1 cut(s)	119
CsiI	ACCWGGT	1 cut(s)	1697
Csp6I	GTAC	9 cut(s)	1351, 1388, 1452, 2117, 2184, 2427, 2612, 3014, 3149
CviQI	GTAC	9 cut(s)	1351, 1388, 1452, 2117, 2184, 2427, 2612, 3014, 3149
DraI	TTTAAA	1 cut(s)	1690
DrdI	GACNNNNNNGTC	1 cut(s)	928
DseDI	GACNNNNNNGTC	1 cut(s)	928
EaeI	YGGCCR	2 cut(s)	1189, 1422
Eam1104I	CTCTTC	2 cut(s)	2250, 3220
EarI	CTCTTC	2 cut(s)	2250, 3220
EciI	GGCGGA	1 cut(s)	125
Eco105I	TACGTA	1 cut(s)	1391
Eco130I	CCWWGG	3 cut(s)	533, 1326, 1383
Eco147I	AGGCCT	3 cut(s)	423, 1320, 1382
Eco24I	GRGCYC	3 cut(s)	20, 1140, 1421
Eco31I	GGTCTC	1 cut(s)	1707
Eco32I	GATATC	1 cut(s)	2455
Eco47I	GGWCC	1 cut(s)	2797
Eco47III	AGCGCT	2 cut(s)	618, 2325
Eco57I	CTGAAG	3 cut(s)	1335, 2466, 3002
Eco88I	CYCGRG	1 cut(s)	85
Eco91I	GGTNACC	2 cut(s)	1012, 3256
EcoO65I	GGTNACC	2 cut(s)	1012, 3256
EcoRI	GAATTC	3 cut(s)	459, 2924, 2948
EcoRII	CCWGG	5 cut(s)	463, 1697, 2068, 2463, 2933
EcoRV	GATATC	1 cut(s)	2455
EcoT14I	CCWWGG	3 cut(s)	533, 1326, 1383
EcoT22I	ATGCAT	1 cut(s)	3275
EcoT38I	GRGCYC	3 cut(s)	20, 1140, 1421
ErhI	CCWWGG	3 cut(s)	533, 1326, 1383
Esp3I	CGTCTC	1 cut(s)	137
FalI	AAGNNNNNCTT	4 cut(s)	141, 173, 1517, 1549
FaqI	GGGAC	3 cut(s)	2298, 2352, 2520
FauNDI	CATATG	2 cut(s)	502, 1960
FbaI	TGATCA	2 cut(s)	856, 1855
FblI	GTMKAC	4 cut(s)	188, 793, 2065, 2176
FokI	GGATG	4 cut(s)	663, 1693, 2480, 2525
FriOI	GRGCYC	3 cut(s)	20, 1140, 1421
FspBI	CTAG	6 cut(s)	362, 689, 915, 1056, 2672, 3180
GlaI	GCGC	3 cut(s)	618, 1100, 2325
GsaI	CCCAGC	1 cut(s)	623
GsuI	CTGGAG	3 cut(s)	565, 2151, 2379
HaeII	RGCGCY	2 cut(s)	620, 2327
HaeIII	GGCC	8 cut(s)	423, 1191, 1320, 1382, 1424, 1826, 2396, 3118
HapII	CCGG	8 cut(s)	51, 66, 184, 523, 975, 1230, 3064, 3146
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	3 cut(s)	619, 1101, 2326
Hin6I	GCGC	3 cut(s)	617, 1099, 2324
HinP1I	GCGC	3 cut(s)	617, 1099, 2324
HincII	GTYRAC	1 cut(s)	2066
HindII	GTYRAC	1 cut(s)	2066
HindIII	AAGCTT	4 cut(s)	561, 1673, 2306, 3137
HpaII	CCGG	8 cut(s)	51, 66, 184, 523, 975, 1230, 3064, 3146
Hpy166II	GTNNAC	6 cut(s)	189, 794, 1988, 2066, 2177, 3051
Hpy188III	TCNNGA	5 cut(s)	280, 544, 739, 1313, 1897
Hpy8I	GTNNAC	6 cut(s)	189, 794, 1988, 2066, 2177, 3051
Hpy99I	CGWCG	7 cut(s)	74, 77, 128, 180, 1880, 3222, 3314
HpyAV	CCTTC	8 cut(s)	1129, 1310, 1559, 1642, 2210, 2328, 2485, 2724
HpyCH4III	ACNGT	6 cut(s)	62, 1144, 1477, 2557, 2797, 3061
HpyCH4IV	ACGT	6 cut(s)	227, 796, 1390, 1620, 2509, 2845
HpyF10VI	GCNNNNNNNGC	6 cut(s)	605, 614, 924, 1379, 2006, 2015
HpySE526I	ACGT	6 cut(s)	227, 796, 1390, 1620, 2509, 2845
HspAI	GCGC	3 cut(s)	617, 1099, 2324
KpnI	GGTACC	2 cut(s)	1455, 3152
Ksp22I	TGATCA	2 cut(s)	856, 1855
LmnI	GCTCC	4 cut(s)	1262, 2203, 2383, 2666
Lsp1109I	GCAGC	9 cut(s)	253, 412, 586, 678, 965, 1795, 1877, 2554, 2603
LweI	GCATC	4 cut(s)	1068, 2071, 2215, 2365
MabI	ACCWGGT	1 cut(s)	1697
MaeI	CTAG	6 cut(s)	362, 689, 915, 1056, 2672, 3180
MaeII	ACGT	6 cut(s)	227, 796, 1390, 1620, 2509, 2845
MfeI	CAATTG	2 cut(s)	345, 903
MflI	RGATCY	4 cut(s)	506, 571, 2056, 2194
MhlI	GDGCHC	6 cut(s)	20, 247, 1140, 1421, 1669, 2671
MlsI	TGGCCA	1 cut(s)	1191
MluNI	TGGCCA	1 cut(s)	1191
MlyI	GAGTC	6 cut(s)	13, 920, 938, 944, 1493, 3193
MmeI	TCCRAC	4 cut(s)	122, 534, 2003, 2572
Mox20I	TGGCCA	1 cut(s)	1191
Mph1103I	ATGCAT	1 cut(s)	3275
MroXI	GAANNNNTTC	3 cut(s)	963, 1974, 2225
MscI	TGGCCA	1 cut(s)	1191
MslI	CAYNNNNRTG	4 cut(s)	590, 698, 1298, 2167
Msp20I	TGGCCA	1 cut(s)	1191
MspI	CCGG	8 cut(s)	51, 66, 184, 523, 975, 1230, 3064, 3146
MspR9I	CCNGG	6 cut(s)	465, 523, 1699, 2070, 2465, 2935
MunI	CAATTG	2 cut(s)	345, 903
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	5 cut(s)	465, 1699, 2070, 2465, 2935
MwoI	GCNNNNNNNGC	6 cut(s)	605, 614, 924, 1379, 2006, 2015
NciI	CCSGG	1 cut(s)	523
NdeI	CATATG	2 cut(s)	502, 1960
NheI	GCTAGC	1 cut(s)	1055
NlaIV	GGNNCC	8 cut(s)	55, 508, 864, 1264, 1453, 2058, 2736, 3150
NmeAIII	GCCGAG	1 cut(s)	1400
NmuCI	GTSAC	6 cut(s)	700, 713, 1276, 1288, 1616, 3004
NsiI	ATGCAT	1 cut(s)	3275
NspI	RCATGY	4 cut(s)	251, 1407, 1497, 2345
PaeR7I	CTCGAG	1 cut(s)	85
PaqCI	CACCTGC	1 cut(s)	1084
PceI	AGGCCT	3 cut(s)	423, 1320, 1382
PciI	ACATGT	1 cut(s)	2341
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 1930
PctI	GAATGC	1 cut(s)	121
PdmI	GAANNNNTTC	3 cut(s)	963, 1974, 2225
PfeI	GAWTC	8 cut(s)	180, 742, 2189, 2644, 2698, 2773, 2849, 3022
Pfl23II	CGTACG	1 cut(s)	2183
PfoI	TCCNGGA	2 cut(s)	463, 2463
PleI	GAGTC	6 cut(s)	12, 919, 937, 944, 1492, 3192
PpsI	GAGTC	6 cut(s)	12, 919, 937, 944, 1492, 3192
Ppu21I	YACGTR	1 cut(s)	1391
PscI	ACATGT	1 cut(s)	2341
PshAI	GACNNNNGTC	2 cut(s)	1478, 2403
PshBI	ATTAAT	1 cut(s)	1029
PsiI	TTATAA	2 cut(s)	2651, 3203
Psp6I	CCWGG	5 cut(s)	463, 1697, 2068, 2463, 2933
PspEI	GGTNACC	2 cut(s)	1012, 3256
PspFI	CCCAGC	1 cut(s)	619
PspGI	CCWGG	5 cut(s)	463, 1697, 2068, 2463, 2933
PspLI	CGTACG	1 cut(s)	2183
PspN4I	GGNNCC	8 cut(s)	55, 508, 864, 1264, 1453, 2058, 2736, 3150
PspPI	GGNCC	1 cut(s)	2797
PspXI	VCTCGAGB	1 cut(s)	85
PstI	CTGCAG	4 cut(s)	402, 735, 1662, 2020
PstNI	CAGNNNCTG	2 cut(s)	1148, 2635
PsuI	RGATCY	4 cut(s)	506, 571, 2056, 2194
RsaI	GTAC	9 cut(s)	1352, 1389, 1453, 2118, 2185, 2428, 2613, 3015, 3150
RsaNI	GTAC	9 cut(s)	1351, 1388, 1452, 2117, 2184, 2427, 2612, 3014, 3149
RseI	CAYNNNNRTG	4 cut(s)	590, 698, 1298, 2167
SalI	GTCGAC	1 cut(s)	2064
Sau96I	GGNCC	1 cut(s)	2797
SchI	GAGTC	6 cut(s)	13, 920, 938, 944, 1493, 3193
ScrFI	CCNGG	6 cut(s)	465, 523, 1699, 2070, 2465, 2935
SduI	GDGCHC	6 cut(s)	20, 247, 1140, 1421, 1669, 2671
SexAI	ACCWGGT	1 cut(s)	1697
SfaNI	GCATC	4 cut(s)	1068, 2071, 2215, 2365
SfcI	CTRYAG	6 cut(s)	398, 731, 1254, 1658, 1944, 2016
Sfr274I	CTCGAG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	2797
SlaI	CTCGAG	1 cut(s)	85
SmiMI	CAYNNNNRTG	4 cut(s)	590, 698, 1298, 2167
SmlI	CTYRAG	3 cut(s)	85, 1670, 2834
SmoI	CTYRAG	3 cut(s)	85, 1670, 2834
SnaBI	TACGTA	1 cut(s)	1391
SseBI	AGGCCT	3 cut(s)	423, 1320, 1382
SsiI	CCGC	4 cut(s)	136, 152, 1755, 2864
SspI	AATATT	2 cut(s)	2527, 3213
SspMI	CTAG	6 cut(s)	362, 689, 915, 1056, 2672, 3180
StuI	AGGCCT	3 cut(s)	423, 1320, 1382
StyD4I	CCNGG	6 cut(s)	463, 521, 1697, 2068, 2463, 2933
StyI	CCWWGG	3 cut(s)	533, 1326, 1383
TaaI	ACNGT	6 cut(s)	62, 1144, 1477, 2557, 2797, 3061
TaiI	ACGT	6 cut(s)	230, 799, 1393, 1623, 2512, 2848
TaqI	TCGA	8 cut(s)	86, 126, 178, 1482, 2065, 2728, 3033, 3309
TatI	WGTACW	1 cut(s)	3013
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	8 cut(s)	180, 742, 2189, 2644, 2698, 2773, 2849, 3022
TscAI	CASTG	9 cut(s)	1024, 1078, 1444, 1667, 1802, 2091, 2560, 2745, 3009
TseFI	GTSAC	6 cut(s)	700, 713, 1276, 1288, 1616, 3004
TseI	GCWGC	9 cut(s)	266, 400, 599, 666, 978, 1808, 1865, 2567, 2591
Tsp45I	GTSAC	6 cut(s)	700, 713, 1276, 1288, 1616, 3004
TspDTI	ATGAA	9 cut(s)	1111, 1697, 1709, 1778, 1797, 1977, 2527, 2937, 2961
TspGWI	ACGGA	4 cut(s)	112, 2201, 2219, 3206
TspRI	CASTG	9 cut(s)	1024, 1078, 1444, 1667, 1802, 2091, 2560, 2745, 3009
VpaK11BI	GGWCC	1 cut(s)	2797
VspI	ATTAAT	1 cut(s)	1029
XapI	RAATTY	8 cut(s)	338, 459, 1241, 1684, 2534, 2913, 2924, 2948
XceI	RCATGY	4 cut(s)	251, 1407, 1497, 2345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	540
XhoI	CTCGAG	1 cut(s)	85
XmiI	GTMKAC	4 cut(s)	188, 793, 2065, 2176
XmnI	GAANNNNTTC	3 cut(s)	963, 1974, 2225
XspI	CTAG	6 cut(s)	362, 689, 915, 1056, 2672, 3180
Zsp2I	ATGCAT	1 cut(s)	3275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.