Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003103

Physical Location & Seq

Genomic Coordinates Reverse (-)

19135266 .. 19182565

Gene Structure 47300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG091100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3318 bp

ATGAGTCATTCAACGGGCTCGCCAAACGATGTGGAAGCAGGAAGCAACCGTTCCGGCGGCGACGAGGAGTCGTCGAATGTTTTTGATATTACCAGAACTAAGCATGCTTCCATCGACCGTCTCCGCCGTTGGAGGCAAGCGGCACTTGTGCTAAATGCTTCTCGTCGATTCCGGTATACCTTAGACTTGAAAAAGGAGGAAGAAAAAAAGCAGACGTTAAGGAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATTTCTTTTTAAGGAATCCGTAACACAGGAAAATGGAATTTCGCCACCAAAACCAAGTTCTGCTGGTGAATTTCCAATTGGACAAGAAGAAATAGCTTCAATTTCAAGGGATCATAATTTTACTACTCTGCAGCAATATGGGGGGGTCAAAGGCCTCGGAGAATTATTGAAAACAAGTTTAGAAAAGGGAATTCCTGGAAGTGATGATGATTTACTAAAACGAAAAACTGCATATGGATCCAACACATATCCCCGGAAAAAACCAAGGAGTTTCTGGAGATTTCTCTGGGAAGCTTGCCAAGATCTTACTCTTATCATTTTGATGGTAGCTGCTGTGGCTTCTTTAGCGCTGGGTATAAAAACAGAGGGTATAAAGGAGGGATGGTATGATGGGGGCAGCATTGCTTTTGCAGTTCTCCTAGTCATTGTTGTGACAGCCATTAGTGACTACAAACAATCTCTGCAGTTCCAGAATCTAAATGAGGAAAAGAGAAATATACAAATTGAGGTGTGTTTTCATTGTGTCATTATATCATACCTTGGTGTCTTCTTTTCTGTGTCATTTCATTTTTTTGGTTATGTGCAGGTTATCAGAGGTGGTAGACGTGTTGAGGTTTCAATTTATGATCTTGTTGTAGGTGATGTTATACCCCTTAACATTGGTGATCAGGTTCCCGCTGATGGGGTTTTAATCACTGGTCATTCACTTTCAATTGATGAGTCTAGCATGACCGGCGAGTCCAAGATTGTTCGCAAGGACCCCAAAGAACCATTTCTAATGTCCGGCTGCAAAGTAGCAGATGGAAATGGTATAATGCTGGTAACCAGTGTTGGTATTAATACTGAATGGGGATTACTCATGGCTAGCATCTCGGAAGACACTGGTGAAGAAACACCCTTGCAGGTGCGCTTGAATGGGGTTGCTACCTTCATTGGTGTTGTGGGACTCACCGTAGCTCTCCTCGTCTTATGTGTCCTTTTGGTCAGATACTTTACTGGCCATACAACAAATGCAGATGGAACTTCTCAGTTTGTTGCCGGAAAAACAAAATTTGGGAAAGCCATAGATGGAGCCATCAAAATTGTCACTATTGCAGTCACCATTGTAGTGGTTGCTGTTCCTGAAGGCCTCCCCTTAGCTGTTACCTTAACACTTGCTTACTCGATGAGAAAAATGATGGCAGATAAGGCCTTGGTACGTAGGCTTTCTGCATGTGAAACAATGGGCTCGGCCACTACTATATGCAGTGATAAGACTGGTACCTTAACTTTGAACCAGATGACTGTGGTCGAGTCTTGTGCATGTTTGAAGAAAGTCAATGACTCTGATGGCAAGCCAGACTTGTCACCAAAGATATCGTCTTTGATTATTGAAGGCATAGCTCAGAATACAACTGGCAATGTTTATGTGCCCGAGACTGGTGGTGATGTAGAGGTTACTGGATCACCAACAGAGAAGGCAATTCTGCAGTGGGCACTCAAGCTTGGGATGAATTTTGAAGCCACCAGGTCTCAATCTTCAATTCTTCATGTGTTCCCATTCAACTCCGAGAAAAAACGAGGCGGTGTAGCAGTTAAATTGCCAAACAATGAAGTTCATATACACTGGAAAGGGGCTGCTGAAATAATCTTGGCCTCATGCACAAGATACATTGACGGCAATGATCAGGTGGCAGCAATGGACGACGACAAGATTATGTTTTTCAGGAAATCTATTGAGGATATGGCTGGTCGTAGTTTGCGTTGTGTTGCTATAGCATATTTACCATATGAATTGGAAAATGTTCCAACTGGTGAACAACAATTAGCTGATTGGGCAATGCCTGCAGATGACCTTGTTTTACTTGCTATTGTTGGTATAAAGGATCCTTGTCGACCAGGAGTTGCAGATGCAGTGAGACTATGCCAAAAGGCTGGCGTTAAGGTACGCATGGTTACTGGAGACAATGTTCAGACTGCAAAGGCAATAGCATTGGAATGTGGTATACTGCGTACTGATTCAGATCTTAGGGAGCATCTAATTGAAGGGAAAGACTTCCGTGAGCTTTCTGATAGGGAGAGAGAAGAGGTTGCTGAGAAAATCTCGGTAATGGGACGATCCTCTCCTAATGATAAGCTTCTGCTTGTGCAAGCGCTAAGGAGAAGGGGACATGTTGTTGCTGTTACTGGAGATGGCACTAATGATGCTCCTGCACTGCATGAGGCCGACATTGGTCTTGCTATGGGTATTCAAGGTACTGAGGTTGCCAAAGAGAGTTCTGATATCATTATCCTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGACGTTCTGTATATGCAAATATTCAGAAATTCATCCAATTCCAACTCACTGTCAATGTTGCTGCACTTGTTATCAATGTGGTGGCAGCGATTTCCTCTGGTGAAGTACCACTAAATGCTGTTCAGCTTCTGTGGGTGAATCTTATAATGGATACTCTTGGAGCACTAGCATTGGCTACTGAGCCTCCTACGAATCATCTGATGGACAGACCTCCTGTTGGTCGAAGGGAACCGTTGATAACTAATATAATGTGGAGGAACTTATTGATTCAGGCTATCTACCAAATTATTGTCCTCCTTATCCTTAATTTCCGAGGGAAAAGTATTCTCAATCTGGAACACGATTCTACTGACCATGCAGACAAAGTGAAGAACACACTGATATTCAATACATTTGTCCTTTGTCAAATTTTCAATGAATTCAATGCCAGGAAGCCAGATGAATTCAACATATTCAAAGGAATTACCAAAAATTATCTCTTTATGGGAATAATCGCAGTGACACTTGTACTTCAGATTCTCATTGTCGAGTTTCTGGGGAAGTTTACTACAACAGTCCGGCTTAACTGGAAGCATTGGTTGATTTCTGTTGTCATTGCTTTTATCAGTTGGCCTCTTGCTGTTGTTGGGAAGTTTATTCCAGTACCTGAAACTCCTTTCCACAAGTATTTCACTAGGAGTCCTCCCTTTAAGTTTATCGCCGGAATATTCCGTCGGCGAAGAGAGAGAGCAGAGGTTAGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1105

Amino Acids

121.59

Weight (kDa)

8.02

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	26 - 68	3.9e-17	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	132 - 200	4.5e-14	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	279 - 375	4e-21	P-type ATPase actuator domain
Cation_ATPase	PF13246	541 - 712	1.2e-31	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	699 - 822	3.9e-14	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	893 - 1069	1.2e-45	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29900 AT4G29900 AT5G57110 AT5G57110 AT5G57110
fragaria_vesca	FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940
malus_domestica	MD13G1241000.v1.1 MD16G1245600.v1.1 MD16G1246100.v1.1
prunus_persica	Prupe.1G072600_v2.0.a1 Prupe.8G012900_v2.0.a1
pyrus_communis	pycom13g21220
rosa_chinensis	RchiOBHm_Chr4g0398891 RchiOBHm_Chr4g0398951
rosa_laevigata	RLG00000009307 RLG00000009309 RLG00000009365
rosa_multiflora	Rmu_sc0004094.1_g000033 Rmu_ssc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343340 Rroxscaffold_5G00343930 Rroxscaffold_5G00344000
rosa_rugosa	Rorug04G0013200
rosa_samantha	Rh4AG091100 Rh4CG093100 Rh4CG099100 Rh4CG099400
rosa_wichuraiana	Rw4G007100 Rw4G007130 Rw4G007500 Rw4G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2717
AarI	CACCTGC	1 cut(s)	1150
AasI	GACNNNNNNGTC	1 cut(s)	994
Acc36I	ACCTGC	2 cut(s)	832, 1150
Acc65I	GGTACC	1 cut(s)	1517
AccB1I	GGYRCC	1 cut(s)	1517
AccI	GTMKAC	4 cut(s)	176, 859, 2131, 2242
AciI	CCGC	5 cut(s)	57, 124, 140, 933, 1821
AclWI	GGATC	7 cut(s)	375, 489, 502, 1708, 2117, 2130, 2349
AcoI	YGGCCR	2 cut(s)	1255, 1488
AcsI	RAATTY	9 cut(s)	294, 326, 447, 1307, 1750, 2600, 2979, 2990, 3014
AcuI	CTGAAG	3 cut(s)	1401, 2532, 3068
AfaI	GTAC	8 cut(s)	1455, 1519, 2184, 2251, 2494, 2679, 3081, 3216
AfeI	AGCGCT	2 cut(s)	606, 2391
AfiI	CCNNNNNNNGG	4 cut(s)	938, 939, 1676, 2789
AflIII	ACRYGT	2 cut(s)	862, 2407
AhdI	GACNNNNNGTC	1 cut(s)	67
AjiI	CACGTC	1 cut(s)	863
AjnI	CCWGG	5 cut(s)	451, 1763, 2134, 2529, 2999
AjuI	GAANNNNNNNTTGG	4 cut(s)	298, 318, 330, 350
AloI	GAACNNNNNNTCC	2 cut(s)	2190, 2222
Alw21I	GWGCWC	2 cut(s)	235, 2737
Alw26I	GTCTC	5 cut(s)	125, 1667, 1773, 2149, 2193
AlwI	GGATC	7 cut(s)	375, 489, 502, 1708, 2117, 2130, 2349
AlwNI	CAGNNNCTG	2 cut(s)	2701, 3218
Ama87I	CYCGRG	1 cut(s)	1670
Aor51HI	AGCGCT	2 cut(s)	606, 2391
AoxI	GGCC	8 cut(s)	409, 1255, 1384, 1446, 1488, 1890, 2460, 3182
ApeKI	GCWGC	9 cut(s)	254, 388, 587, 654, 1044, 1874, 1931, 2633, 2657
ApoI	RAATTY	9 cut(s)	294, 326, 447, 1307, 1750, 2600, 2979, 2990, 3014
ArsI	GACNNNNNNTTYG	2 cut(s)	1601, 1633
AseI	ATTAAT	1 cut(s)	1095
Asp700I	GAANNNNTTC	3 cut(s)	1029, 2040, 2291
Asp718I	GGTACC	1 cut(s)	1517
AspLEI	GCGC	3 cut(s)	607, 1167, 2392
AspS9I	GGNCC	1 cut(s)	1015
AsuC2I	CCSGG	1 cut(s)	511
AsuNHI	GCTAGC	1 cut(s)	1121
AvaI	CYCGRG	1 cut(s)	1670
AvaII	GGWCC	1 cut(s)	1015
BaeGI	GKGCMC	2 cut(s)	1671, 1735
BaeI	ACNNNNGTAYC	2 cut(s)	2484, 2517
BalI	TGGCCA	1 cut(s)	1257
BamHI	GGATCC	2 cut(s)	494, 2122
BanI	GGYRCC	1 cut(s)	1517
BanII	GRGCYC	2 cut(s)	20, 1487
BarI	GAAGNNNNNNTAC	2 cut(s)	1842, 1874
BbsI	GAAGAC	2 cut(s)	796, 1140
Bbv12I	GWGCWC	2 cut(s)	235, 2737
BbvI	GCAGC	9 cut(s)	241, 400, 574, 666, 1031, 1861, 1943, 2620, 2669
BceAI	ACGGC	2 cut(s)	111, 1930
BcgI	CGANNNNNNTGC	2 cut(s)	1538, 1572
BciT130I	CCWGG	5 cut(s)	453, 1765, 2136, 2531, 3001
BciVI	GTATCC	1 cut(s)	2716
BclI	TGATCA	2 cut(s)	922, 1921
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	5 cut(s)	125, 1667, 1773, 2149, 2193
BfaI	CTAG	5 cut(s)	677, 981, 1122, 2738, 3246
BfmI	CTRYAG	5 cut(s)	386, 719, 1724, 2010, 2082
BfoI	RGCGCY	2 cut(s)	608, 2393
BfuAI	ACCTGC	2 cut(s)	832, 1150
BfuI	GTATCC	1 cut(s)	2716
BglII	AGATCT	2 cut(s)	559, 2260
Bme1390I	CCNGG	6 cut(s)	453, 511, 1765, 2136, 2531, 3001
Bme18I	GGWCC	1 cut(s)	1015
BmeRI	GACNNNNNGTC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	1670
BmgBI	CACGTC	1 cut(s)	863
BmgT120I	GGNCC	1 cut(s)	1015
BmiI	GGNNCC	7 cut(s)	496, 930, 1017, 1330, 1519, 2124, 2802
BmrFI	CCNGG	6 cut(s)	453, 511, 1765, 2136, 2531, 3001
BmsI	GCATC	4 cut(s)	1134, 2137, 2281, 2431
BmtI	GCTAGC	1 cut(s)	1125
BoxI	GACNNNNGTC	2 cut(s)	1544, 2469
BpiI	GAAGAC	2 cut(s)	796, 1140
BplI	GAGNNNNNCTC	2 cut(s)	2324, 2356
BpmI	CTGGAG	3 cut(s)	553, 2217, 2445
Bpu10I	CCTNAGC	2 cut(s)	1393, 2393
BpuEI	CTTGAG	1 cut(s)	1721
BpuMI	CCSGG	1 cut(s)	511
BsaAI	YACGTR	1 cut(s)	1457
BsaBI	GATNNNNATC	1 cut(s)	2259
BsaI	GGTCTC	1 cut(s)	1773
BsaJI	CCNNGG	6 cut(s)	412, 509, 521, 796, 1449, 2884
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	6 cut(s)	626, 656, 2190, 2220, 2740, 2770
Bsc4I	CCNNNNNNNGG	4 cut(s)	938, 939, 1676, 2789
Bse118I	RCCGGY	1 cut(s)	989
Bse3DI	GCAATG	6 cut(s)	657, 1663, 1924, 1941, 2082, 3165
Bse8I	GATNNNNATC	1 cut(s)	2259
BseBI	CCWGG	5 cut(s)	453, 1765, 2136, 2531, 3001
BseDI	CCNNGG	6 cut(s)	412, 509, 521, 796, 1449, 2884
BseGI	GGATG	4 cut(s)	644, 1752, 2539, 2604
BseJI	GATNNNNATC	1 cut(s)	2259
BseLI	CCNNNNNNNGG	4 cut(s)	938, 939, 1676, 2789
BseMI	GCAATG	6 cut(s)	657, 1663, 1924, 1941, 2082, 3165
BseMII	CTCAG	5 cut(s)	1298, 1655, 2322, 2487, 2742
BseRI	GAGGAG	2 cut(s)	80, 1208
BseSI	GKGCMC	2 cut(s)	1671, 1735
BseXI	GCAGC	9 cut(s)	241, 400, 574, 666, 1031, 1861, 1943, 2620, 2669
BseYI	CCCAGC	1 cut(s)	607
BsgI	GTGCAG	3 cut(s)	860, 2433, 2619
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	8 cut(s)	411, 1257, 1386, 1448, 1490, 1892, 2462, 3184
BshNI	GGYRCC	1 cut(s)	1517
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	2 cut(s)	235, 2737
BsiHKCI	CYCGRG	1 cut(s)	1670
BsiSI	CCGG	8 cut(s)	54, 172, 511, 990, 1041, 1296, 3130, 3273
BslFI	GGGAC	4 cut(s)	1215, 2364, 2418, 2586
BslI	CCNNNNNNNGG	4 cut(s)	938, 939, 1676, 2789
BsmAI	GTCTC	5 cut(s)	125, 1667, 1773, 2149, 2193
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	4 cut(s)	1215, 2364, 2418, 2586
BsnI	GGCC	8 cut(s)	411, 1257, 1386, 1448, 1490, 1892, 2462, 3184
Bso31I	GGTCTC	1 cut(s)	1773
BsoBI	CYCGRG	1 cut(s)	1670
Bsp1286I	GDGCHC	6 cut(s)	20, 235, 1487, 1671, 1735, 2737
BspACI	CCGC	5 cut(s)	57, 124, 140, 933, 1821
BspANI	GGCC	8 cut(s)	411, 1257, 1386, 1448, 1490, 1892, 2462, 3184
BspCNI	CTCAG	5 cut(s)	1297, 1654, 2323, 2488, 2743
BspLI	GGNNCC	7 cut(s)	496, 930, 1017, 1330, 1519, 2124, 2802
BspMAI	CTGCAG	4 cut(s)	390, 723, 1728, 2086
BspMI	ACCTGC	2 cut(s)	832, 1150
BspOI	GCTAGC	1 cut(s)	1125
BspPI	GGATC	7 cut(s)	375, 489, 502, 1708, 2117, 2130, 2349
BspT107I	GGYRCC	1 cut(s)	1517
BspTNI	GGTCTC	1 cut(s)	1773
BsrDI	GCAATG	6 cut(s)	657, 1663, 1924, 1941, 2082, 3165
BsrFI	RCCGGY	1 cut(s)	989
BssAI	RCCGGY	1 cut(s)	989
BssECI	CCNNGG	6 cut(s)	412, 509, 521, 796, 1449, 2884
BssNAI	GTATAC	2 cut(s)	177, 2243
BssT1I	CCWWGG	3 cut(s)	521, 796, 1449
Bst1107I	GTATAC	2 cut(s)	177, 2243
Bst2UI	CCWGG	5 cut(s)	453, 1765, 2136, 2531, 3001
Bst4CI	ACNGT	7 cut(s)	50, 119, 1210, 1543, 2623, 2805, 3127
Bst6I	CTCTTC	2 cut(s)	2316, 3286
BstAPI	GCANNNNNTGC	1 cut(s)	2081
BstBAI	YACGTR	1 cut(s)	1457
BstC8I	GCNNGC	9 cut(s)	20, 105, 138, 553, 1123, 1592, 2082, 2173, 2388
BstEII	GGTNACC	1 cut(s)	1078
BstF5I	GGATG	4 cut(s)	644, 1752, 2539, 2604
BstH2I	RGCGCY	2 cut(s)	608, 2393
BstHHI	GCGC	3 cut(s)	607, 1167, 2392
BstMAI	GTCTC	5 cut(s)	125, 1667, 1773, 2149, 2193
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	7 cut(s)	251, 593, 602, 990, 1445, 2072, 2081
BstNI	CCWGG	5 cut(s)	453, 1765, 2136, 2531, 3001
BstNSI	RCATGY	5 cut(s)	107, 239, 1473, 1563, 2411
BstPAI	GACNNNNGTC	2 cut(s)	1544, 2469
BstPI	GGTNACC	1 cut(s)	1078
BstSCI	CCNGG	6 cut(s)	451, 509, 1763, 2134, 2529, 2999
BstSFI	CTRYAG	5 cut(s)	386, 719, 1724, 2010, 2082
BstSLI	GKGCMC	2 cut(s)	1671, 1735
BstSNI	TACGTA	1 cut(s)	1457
BstV1I	GCAGC	9 cut(s)	241, 400, 574, 666, 1031, 1861, 1943, 2620, 2669
BstV2I	GAAGAC	2 cut(s)	796, 1140
BstX2I	RGATCY	4 cut(s)	494, 559, 2122, 2260
BstXI	CCANNNNNNTGG	2 cut(s)	1366, 2171
BstYI	RGATCY	4 cut(s)	494, 559, 2122, 2260
BstZ17I	GTATAC	2 cut(s)	177, 2243
BsuI	GTATCC	1 cut(s)	2716
BsuRI	GGCC	8 cut(s)	411, 1257, 1386, 1448, 1490, 1892, 2462, 3184
BtrI	CACGTC	1 cut(s)	863
BtsCI	GGATG	4 cut(s)	644, 1752, 2539, 2604
BtsI	GCAGTG	5 cut(s)	1510, 1733, 2157, 2450, 3075
BveI	ACCTGC	2 cut(s)	832, 1150
Cac8I	GCNNGC	9 cut(s)	20, 105, 138, 553, 1123, 1592, 2082, 2173, 2388
CaiI	CAGNNNCTG	2 cut(s)	2701, 3218
CfoI	GCGC	3 cut(s)	607, 1167, 2392
Cfr10I	RCCGGY	1 cut(s)	989
Cfr13I	GGNCC	1 cut(s)	1015
CsiI	ACCWGGT	1 cut(s)	1763
Csp6I	GTAC	8 cut(s)	1454, 1518, 2183, 2250, 2493, 2678, 3080, 3215
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CviQI	GTAC	8 cut(s)	1454, 1518, 2183, 2250, 2493, 2678, 3080, 3215
DrdI	GACNNNNNNGTC	1 cut(s)	994
DriI	GACNNNNNGTC	1 cut(s)	67
DseDI	GACNNNNNNGTC	1 cut(s)	994
EaeI	YGGCCR	2 cut(s)	1255, 1488
Eam1104I	CTCTTC	2 cut(s)	2316, 3286
Eam1105I	GACNNNNNGTC	1 cut(s)	67
EarI	CTCTTC	2 cut(s)	2316, 3286
EciI	GGCGGA	1 cut(s)	113
Eco105I	TACGTA	1 cut(s)	1457
Eco130I	CCWWGG	3 cut(s)	521, 796, 1449
Eco147I	AGGCCT	3 cut(s)	411, 1386, 1448
Eco24I	GRGCYC	2 cut(s)	20, 1487
Eco31I	GGTCTC	1 cut(s)	1773
Eco32I	GATATC	2 cut(s)	1614, 2521
Eco47I	GGWCC	1 cut(s)	1015
Eco47III	AGCGCT	2 cut(s)	606, 2391
Eco57I	CTGAAG	3 cut(s)	1401, 2532, 3068
Eco88I	CYCGRG	1 cut(s)	1670
Eco91I	GGTNACC	1 cut(s)	1078
EcoO109I	RGGNCCY	1 cut(s)	1015
EcoO65I	GGTNACC	1 cut(s)	1078
EcoRI	GAATTC	3 cut(s)	447, 2990, 3014
EcoRII	CCWGG	5 cut(s)	451, 1763, 2134, 2529, 2999
EcoRV	GATATC	2 cut(s)	1614, 2521
EcoT14I	CCWWGG	3 cut(s)	521, 796, 1449
EcoT38I	GRGCYC	2 cut(s)	20, 1487
ErhI	CCWWGG	3 cut(s)	521, 796, 1449
Esp3I	CGTCTC	1 cut(s)	125
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 1583, 1615
FaqI	GGGAC	4 cut(s)	1215, 2364, 2418, 2586
FauI	CCCGC	1 cut(s)	940
FauNDI	CATATG	2 cut(s)	490, 2026
FbaI	TGATCA	2 cut(s)	922, 1921
FblI	GTMKAC	4 cut(s)	176, 859, 2131, 2242
FokI	GGATG	4 cut(s)	651, 1759, 2546, 2591
FriOI	GRGCYC	2 cut(s)	20, 1487
FspBI	CTAG	5 cut(s)	677, 981, 1122, 2738, 3246
GlaI	GCGC	3 cut(s)	606, 1166, 2391
GsaI	CCCAGC	1 cut(s)	611
GsuI	CTGGAG	3 cut(s)	553, 2217, 2445
HaeII	RGCGCY	2 cut(s)	608, 2393
HaeIII	GGCC	8 cut(s)	411, 1257, 1386, 1448, 1490, 1892, 2462, 3184
HapII	CCGG	8 cut(s)	54, 172, 511, 990, 1041, 1296, 3130, 3273
HhaI	GCGC	3 cut(s)	607, 1167, 2392
Hin6I	GCGC	3 cut(s)	605, 1165, 2390
HinP1I	GCGC	3 cut(s)	605, 1165, 2390
HincII	GTYRAC	1 cut(s)	2132
HindII	GTYRAC	1 cut(s)	2132
HindIII	AAGCTT	3 cut(s)	549, 1739, 2372
HpaII	CCGG	8 cut(s)	54, 172, 511, 990, 1041, 1296, 3130, 3273
Hpy166II	GTNNAC	6 cut(s)	177, 860, 2054, 2132, 2243, 3117
Hpy188III	TCNNGA	5 cut(s)	532, 727, 1379, 1963, 2906
Hpy8I	GTNNAC	6 cut(s)	177, 860, 2054, 2132, 2243, 3117
Hpy99I	CGWCG	5 cut(s)	65, 76, 168, 1946, 3288
HpyAV	CCTTC	8 cut(s)	1195, 1376, 1625, 1708, 2276, 2394, 2551, 2790
HpyCH4III	ACNGT	7 cut(s)	50, 119, 1210, 1543, 2623, 2805, 3127
HpyCH4IV	ACGT	4 cut(s)	215, 862, 1456, 2575
HpyF10VI	GCNNNNNNNGC	7 cut(s)	251, 593, 602, 990, 1445, 2072, 2081
HpySE526I	ACGT	4 cut(s)	215, 862, 1456, 2575
HspAI	GCGC	3 cut(s)	605, 1165, 2390
KpnI	GGTACC	1 cut(s)	1521
Ksp22I	TGATCA	2 cut(s)	922, 1921
LmnI	GCTCC	4 cut(s)	1328, 2269, 2449, 2732
Lsp1109I	GCAGC	9 cut(s)	241, 400, 574, 666, 1031, 1861, 1943, 2620, 2669
LweI	GCATC	4 cut(s)	1134, 2137, 2281, 2431
MabI	ACCWGGT	1 cut(s)	1763
MaeI	CTAG	5 cut(s)	677, 981, 1122, 2738, 3246
MaeII	ACGT	4 cut(s)	215, 862, 1456, 2575
MfeI	CAATTG	2 cut(s)	333, 969
MflI	RGATCY	4 cut(s)	494, 559, 2122, 2260
MhlI	GDGCHC	6 cut(s)	20, 235, 1487, 1671, 1735, 2737
MlsI	TGGCCA	1 cut(s)	1257
MluNI	TGGCCA	1 cut(s)	1257
MlyI	GAGTC	8 cut(s)	13, 77, 986, 1004, 1197, 1559, 1574, 3259
MmeI	TCCRAC	4 cut(s)	110, 522, 2069, 2638
Mox20I	TGGCCA	1 cut(s)	1257
MroXI	GAANNNNTTC	3 cut(s)	1029, 2040, 2291
MscI	TGGCCA	1 cut(s)	1257
MslI	CAYNNNNRTG	4 cut(s)	578, 686, 1364, 2233
Msp20I	TGGCCA	1 cut(s)	1257
MspA1I	CMGCKG	1 cut(s)	935
MspI	CCGG	8 cut(s)	54, 172, 511, 990, 1041, 1296, 3130, 3273
MspR9I	CCNGG	6 cut(s)	453, 511, 1765, 2136, 2531, 3001
MunI	CAATTG	2 cut(s)	333, 969
MvaI	CCWGG	5 cut(s)	453, 1765, 2136, 2531, 3001
MwoI	GCNNNNNNNGC	7 cut(s)	251, 593, 602, 990, 1445, 2072, 2081
NciI	CCSGG	1 cut(s)	511
NdeI	CATATG	2 cut(s)	490, 2026
NheI	GCTAGC	1 cut(s)	1121
NlaIV	GGNNCC	7 cut(s)	496, 930, 1017, 1330, 1519, 2124, 2802
NmeAIII	GCCGAG	1 cut(s)	1466
NmuCI	GTSAC	6 cut(s)	688, 701, 1342, 1354, 1602, 3070
NspI	RCATGY	5 cut(s)	107, 239, 1473, 1563, 2411
PaeI	GCATGC	1 cut(s)	107
PaqCI	CACCTGC	1 cut(s)	1150
PceI	AGGCCT	3 cut(s)	411, 1386, 1448
PciI	ACATGT	1 cut(s)	2407
PcsI	WCGNNNNNNNCGW	1 cut(s)	1996
PdmI	GAANNNNTTC	3 cut(s)	1029, 2040, 2291
PfeI	GAWTC	9 cut(s)	168, 272, 730, 2255, 2710, 2764, 2839, 2915, 3088
PfoI	TCCNGGA	2 cut(s)	451, 2529
PleI	GAGTC	8 cut(s)	12, 76, 985, 1003, 1197, 1558, 1574, 3258
PpsI	GAGTC	8 cut(s)	12, 76, 985, 1003, 1197, 1558, 1574, 3258
Ppu21I	YACGTR	1 cut(s)	1457
PpuMI	RGGWCCY	1 cut(s)	1015
PscI	ACATGT	1 cut(s)	2407
PshAI	GACNNNNGTC	2 cut(s)	1544, 2469
PshBI	ATTAAT	1 cut(s)	1095
PsiI	TTATAA	1 cut(s)	2717
Psp5II	RGGWCCY	1 cut(s)	1015
Psp6I	CCWGG	5 cut(s)	451, 1763, 2134, 2529, 2999
PspEI	GGTNACC	1 cut(s)	1078
PspFI	CCCAGC	1 cut(s)	607
PspGI	CCWGG	5 cut(s)	451, 1763, 2134, 2529, 2999
PspN4I	GGNNCC	7 cut(s)	496, 930, 1017, 1330, 1519, 2124, 2802
PspPI	GGNCC	1 cut(s)	1015
PspPPI	RGGWCCY	1 cut(s)	1015
PstI	CTGCAG	4 cut(s)	390, 723, 1728, 2086
PstNI	CAGNNNCTG	2 cut(s)	2701, 3218
PsuI	RGATCY	4 cut(s)	494, 559, 2122, 2260
RsaI	GTAC	8 cut(s)	1455, 1519, 2184, 2251, 2494, 2679, 3081, 3216
RsaNI	GTAC	8 cut(s)	1454, 1518, 2183, 2250, 2493, 2678, 3080, 3215
RseI	CAYNNNNRTG	4 cut(s)	578, 686, 1364, 2233
SalI	GTCGAC	1 cut(s)	2130
Sau96I	GGNCC	1 cut(s)	1015
SchI	GAGTC	8 cut(s)	13, 77, 986, 1004, 1197, 1559, 1574, 3259
ScrFI	CCNGG	6 cut(s)	453, 511, 1765, 2136, 2531, 3001
SduI	GDGCHC	6 cut(s)	20, 235, 1487, 1671, 1735, 2737
SexAI	ACCWGGT	1 cut(s)	1763
SfaNI	GCATC	4 cut(s)	1134, 2137, 2281, 2431
SfcI	CTRYAG	5 cut(s)	386, 719, 1724, 2010, 2082
SinI	GGWCC	1 cut(s)	1015
SmiMI	CAYNNNNRTG	4 cut(s)	578, 686, 1364, 2233
SmlI	CTYRAG	1 cut(s)	1736
SmoI	CTYRAG	1 cut(s)	1736
SnaBI	TACGTA	1 cut(s)	1457
SphI	GCATGC	1 cut(s)	107
SseBI	AGGCCT	3 cut(s)	411, 1386, 1448
SsiI	CCGC	5 cut(s)	57, 124, 140, 933, 1821
SspI	AATATT	2 cut(s)	2593, 3279
SspMI	CTAG	5 cut(s)	677, 981, 1122, 2738, 3246
StuI	AGGCCT	3 cut(s)	411, 1386, 1448
StyD4I	CCNGG	6 cut(s)	451, 509, 1763, 2134, 2529, 2999
StyI	CCWWGG	3 cut(s)	521, 796, 1449
TaaI	ACNGT	7 cut(s)	50, 119, 1210, 1543, 2623, 2805, 3127
TaiI	ACGT	4 cut(s)	218, 865, 1459, 2578
TaqI	TCGA	8 cut(s)	74, 114, 166, 1421, 1548, 2131, 2794, 3099
TatI	WGTACW	1 cut(s)	3079
TauI	GCSGC	2 cut(s)	60, 143
TfiI	GAWTC	9 cut(s)	168, 272, 730, 2255, 2710, 2764, 2839, 2915, 3088
TseFI	GTSAC	6 cut(s)	688, 701, 1342, 1354, 1602, 3070
TseI	GCWGC	9 cut(s)	254, 388, 587, 654, 1044, 1874, 1931, 2633, 2657
Tsp45I	GTSAC	6 cut(s)	688, 701, 1342, 1354, 1602, 3070
TspGWI	ACGGA	3 cut(s)	265, 2285, 3272
VpaK11BI	GGWCC	1 cut(s)	1015
VspI	ATTAAT	1 cut(s)	1095
XapI	RAATTY	9 cut(s)	294, 326, 447, 1307, 1750, 2600, 2979, 2990, 3014
XceI	RCATGY	5 cut(s)	107, 239, 1473, 1563, 2411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	528
XmiI	GTMKAC	4 cut(s)	176, 859, 2131, 2242
XmnI	GAANNNNTTC	3 cut(s)	1029, 2040, 2291
XspI	CTAG	5 cut(s)	677, 981, 1122, 2738, 3246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.