RchiOBHm_Chr5g0034941

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
28868436 .. 28870656
2221 bp
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UTR
Exon/CDS
Intron
PRQ31389

Sequence Viewer

Length: 192 bp
ATGAGGCTCTACGATGATCTCCTTATCAACGGGTACTACACGACGACGAGGCTGTGGATTGGGACACCGCCTCAGATGTGCGCTCTGATTGTGGATAACGGGAGTAGAGTCACTTATGTGCCTTGCTCTGACTTTGAAGCGTGCAGTAACCATCAGGTTTATTCTGCAATTGTGTTCTTCCGACTGGCCTGA

Protein Analysis

63

Amino Acids

7.21

Weight (kDa)

5.45

Isoelectric Point (pI)

17.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 68
AfaI GTAC 1 cut(s) 35
AgsI TTSAA 1 cut(s) 137
AleI CACNNNNGTG 1 cut(s) 116
AoxI GGCC 1 cut(s) 186
AspLEI GCGC 1 cut(s) 83
BccI CCATC 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 189
BsgI GTGCAG 1 cut(s) 163
BshFI GGCC 1 cut(s) 188
BslFI GGGAC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 1 cut(s) 68
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 85
BsrI ACTGG 1 cut(s) 189
BssMI GATC 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BsuRI GGCC 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 142
CfoI GCGC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 34
CviJI RGCY 3 cut(s) 7, 52, 188
CviKI_1 RGCY 3 cut(s) 7, 52, 188
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 72
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
FaiI YATR 1 cut(s) 117
FaqI GGGAC 1 cut(s) 76
GlaI GCGC 1 cut(s) 82
HaeIII GGCC 1 cut(s) 188
HhaI GCGC 1 cut(s) 83
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HinfI GANTC 1 cut(s) 108
Hpy188I TCNGA 4 cut(s) 75, 87, 130, 182
Hpy99I CGWCG 2 cut(s) 46, 49
HpyCH4V TGCA 2 cut(s) 144, 167
HpyF3I CTNAG 1 cut(s) 72
HspAI GCGC 1 cut(s) 81
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 2 cut(s) 140, 170
MaeIII GTNAC 2 cut(s) 109, 146
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 1 cut(s) 169
MfeI CAATTG 1 cut(s) 168
MluCI AATT 1 cut(s) 168
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 2 cut(s) 42, 81
MslI CAYNNNNRTG 1 cut(s) 116
MunI CAATTG 1 cut(s) 168
NdeII GATC 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 109
OliI CACNNNNGTG 1 cut(s) 116
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 116
Sau3AI GATC 1 cut(s) 16
SchI GAGTC 1 cut(s) 117
SetI ASST 1 cut(s) 159
SgeI CNNG 7 cut(s) 43, 52, 60, 112, 135, 153, 167
SmiMI CAYNNNNRTG 1 cut(s) 116
Sse9I AATT 1 cut(s) 168
SsiI CCGC 1 cut(s) 68
TasI AATT 1 cut(s) 168
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.